2. Ch. 8
1. Energy
1. Types, laws, conversions
2. Chemical reactions
1. Endergonic, exergonic
3. ATP
1. Source of energy for cells
4. Enzymes
1. Speed up chemical reactions
2. Lower activation energy
4. Energy is...Energy is...
The ability toThe ability to do workdo work
The ability toThe ability to transfertransfer
heatheat
Forms of EnergyForms of Energy
Chemical energyChemical energy
Nuclear energyNuclear energy
Solar energySolar energy
Heat energyHeat energy
Mechanical and ElectricalMechanical and Electrical
5. Measuring EnergyMeasuring Energy
Two units commonly usedTwo units commonly used::
CaloriesCalories (C):(C):
Amount of energy it takes to raiseAmount of energy it takes to raise
one gram of water 1one gram of water 1oo
CC
Calories inCalories in foodfood (C) are actually(C) are actually
kilocalories(kilocalories(kcalkcal) =) = 1000 calories1000 calories
JoulesJoules (J): 4.18 Joules = 1(J): 4.18 Joules = 1
caloriecalorie
So they are
actually 100,000
calorie packs!
6. Energy due to positionEnergy due to position --
gravitational, electrical,gravitational, electrical,
or in chemical bondsor in chemical bonds
(called chemical energy)(called chemical energy)
StoredStored energyenergy
Potential EnergyPotential Energy
7. PositionPosition: boulder at the: boulder at the
top of the hill, watertop of the hill, water
behind a dam, stick ofbehind a dam, stick of
plastiqueplastique
ChemicalChemical: tank of gas,: tank of gas,
hamburgerhamburger
Potential EnergyPotential Energy
8. Kinetic EnergyKinetic Energy
Energy due toEnergy due to motion or actionmotion or action
Electromagnetic waves (light), heat,Electromagnetic waves (light), heat,
motion, electrical currentmotion, electrical current
9.
10.
11. Heat and TemperatureHeat and Temperature
Heat - thermal energyHeat - thermal energy ==
kinetic energykinetic energy
from the movement of atoms orfrom the movement of atoms or
moleculesmolecules
TemperatureTemperature ==
average speed of atomsaverage speed of atoms
12. Thermodynamics: the Study ofThermodynamics: the Study of
Energy TransformationsEnergy Transformations
13. 1st Law of Thermodynamics1st Law of Thermodynamics
Energy cannotEnergy cannot
be created norbe created nor
destroyeddestroyed
MayMay changechange fromfrom
one form to anotherone form to another
This is known asThis is known as
thethe law oflaw of
conservation ofconservation of
energyenergy
14. 2nd Law of Thermodynamics2nd Law of Thermodynamics
Energy transfer is not 100% efficientEnergy transfer is not 100% efficient
and each energy transfer increasesand each energy transfer increases
the entropy of the universethe entropy of the universe
No reaction is 100% efficient
Energy Available To Do Work Decreases Over Time
All reactions lose energy in the form of heat
Heat is a less ordered form of energy than other forms like
chemical or mechanical energy
This increases entropy
16. Transfer of EnergyTransfer of Energy
Running, photosynthesis, eatingRunning, photosynthesis, eating
Chemical to mechanical
Light to
chemical
17. Entropy is...Entropy is...
TheThe amount of disorderamount of disorder in a systemin a system
Entropy alwaysEntropy always increases over timeincreases over time (in(in
absence of an input of outside energy)absence of an input of outside energy)
CleaningCleaning
up your room ...up your room ...
18. Energy isEnergy is lostlost inin eacheach transformationtransformation
EntropyEntropy
19. Quick Quick ThinksQuick Quick Thinks
What is the difference between heatWhat is the difference between heat
and temperature?and temperature?
What are the first and second laws ofWhat are the first and second laws of
thermodynamics?thermodynamics?
Why is no reaction 100% efficient?Why is no reaction 100% efficient?
(where does the energy go?)(where does the energy go?)
20. Quick ThinkQuick Think
What is the relationshipWhat is the relationship
between energy andbetween energy and
work?work?
21. Challenging Quick ThinkChallenging Quick Think
How does the 2How does the 2ndnd
law oflaw of
thermodynamicsthermodynamics
help explain thehelp explain the
diffusion of adiffusion of a
substance acrosssubstance across
the cell membrane?the cell membrane?
22. Challenging Quick ThinksChallenging Quick Thinks
Describe the forms ofDescribe the forms of
energy found in an appleenergy found in an apple
as it grows on a tree, thenas it grows on a tree, then
falls and is digested byfalls and is digested by
someone who eats it.someone who eats it.
23. My understanding of energy
is…0 - even with prompting, I can’t show my knowledge
1 - with prompting, I can show knowledge
2 - I get the basics
3 - I understand beyond the basics without help
4 - I can apply my knowledge to homework or test
questions
Knowing that this content is essential to
understanding future content, my next step is to…
25. Chemical ReactionsChemical Reactions
involves...involves...
Breaking bonds in reactantsBreaking bonds in reactants
Forming new ones to create productsForming new ones to create products
EnergyEnergy is required in one direction andis required in one direction and
given off in anothergiven off in another
26. Energy is required in one direction and givenEnergy is required in one direction and given
off in anotheroff in another
Change of StateChange of State
27. Important Vocab
ENERGY OUT
Exergonic – energy
releasing
Cataboloic –
breakdown reaction
Exothermic – heat
releasing
ENERGY IN
Endergonic –
energy requiring
Anaboloic –
building reactions
Endothermic – heat
absorbing
28. ReactionsReactions
Gibb’s FreeGibb’s Free
energy (G)energy (G) –– aa
measure of the "useful"measure of the "useful"
energy that can do workenergy that can do work
in a systemin a system
Think of it as “available”Think of it as “available”
energyenergy
Josiah
Willard
Gibbs
29. ReactionsReactions
Free energy – systems with high G are less stableFree energy – systems with high G are less stable
are more likely to changeare more likely to change
Systems with low G are more stable and less likely toSystems with low G are more stable and less likely to
changechange
32. ReactionsReactions
WhenWhen ΔΔGG is negative, theis negative, the
reaction will occur spontaneouslyreaction will occur spontaneously
Reactions that have aReactions that have a ΔΔGG valuevalue
or zero or more are neveror zero or more are never
spontaneousspontaneous
--ΔG =ΔG =
spontaneousspontaneous
+ΔG = not+ΔG = not
spontaneousspontaneous
34. ReactionsReactions
If we know whatIf we know what
reactions have areactions have a
negative delta G,negative delta G,
we can determinewe can determine
which reactions willwhich reactions will
release energy thatrelease energy that
can be used to docan be used to do
work in the cellwork in the cell Exocytosis – workExocytosis – work
for the cellfor the cell
(requires energy)(requires energy)
35. Most reactions areMost reactions are
reversiblereversible
Reversible reactions willReversible reactions will
approachapproach dynamicdynamic
equilibriumequilibrium
Reactions that come toReactions that come to
equilibrium can no longerequilibrium can no longer
perform workperform work
They have maximumThey have maximum
stability and low Gstability and low G
ReactionsReactions
37. ReactionsReactions
If the reactions ofIf the reactions of
metabolism reachmetabolism reach
equilibrium, a cell couldequilibrium, a cell could
no longer do workno longer do work
The constant flow ofThe constant flow of
materials into and out ofmaterials into and out of
the cell prevent the cellthe cell prevent the cell
from ever reachingfrom ever reaching
equilibriumequilibrium
38. The more negativeThe more negative ΔΔG is, the more workG is, the more work
that reaction can perform for the cellthat reaction can perform for the cell
CC66HH1212OO66 + 6O+ 6O22 6CO6CO22 + 6H+ 6H22OO
ΔΔG = -686 kcal/molG = -686 kcal/mol
39. The more positiveThe more positive ΔΔG is, the more energy isG is, the more energy is
required to drive that reactionrequired to drive that reaction
6CO6CO22 + 6H+ 6H22 0 C0 C66 HH1212 OO66 + 6O+ 6O22
ΔΔG = +686 kcal/molG = +686 kcal/mol
40. Sources of Free Energy for livingSources of Free Energy for living
thingsthings
Sun is ultimate source of energy for mostSun is ultimate source of energy for most
ecosystems!ecosystems!
PhotosynthesisPhotosynthesis
Organic molecules like glucoseOrganic molecules like glucose
6CO6CO22 +12H+12H22O+Sun ---->CO+Sun ---->C66HH12120066 + 6H+ 6H22O + 6OO + 6O22
41.
42. Quick ThinkQuick Think
Cellular respiration uses glucose, whichCellular respiration uses glucose, which
has a high level of free energy, andhas a high level of free energy, and
releases COreleases CO22 and water, which have lowand water, which have low
levels of free energy.levels of free energy.
Is respiration spontaneous or not?Is respiration spontaneous or not?
Is it exergonic or endergonic?Is it exergonic or endergonic?
What happens to the energy releasedWhat happens to the energy released
from glucose?from glucose?
43. Which of the following correctlyWhich of the following correctly
states the relationship between anabolicstates the relationship between anabolic
and catabolic pathways?and catabolic pathways?
A.A. Degradation of organic molecules by anabolic pathways providesDegradation of organic molecules by anabolic pathways provides
the energy to drive catabolic pathways.the energy to drive catabolic pathways.
B.B. Energy derived from catabolic pathways is used to drive theEnergy derived from catabolic pathways is used to drive the
breakdown of organic molecules in anabolic pathways.breakdown of organic molecules in anabolic pathways.
C.C. Anabolic pathways synthesize more complex organic moleculesAnabolic pathways synthesize more complex organic molecules
using the energy derived from catabolic pathways.using the energy derived from catabolic pathways.
D.D. Catabolic pathways produce usable cellular energy byCatabolic pathways produce usable cellular energy by
synthesizing more complex organic molecules.synthesizing more complex organic molecules.
E.E. The flow of energy between catabolic and anabolic pathways isThe flow of energy between catabolic and anabolic pathways is
reversible.reversible.
The answer is ___ because________________
The answer is not ___ because________________
44. Which of the following reactionsWhich of the following reactions
would be endergonic?would be endergonic?
A.A. HClHCl HH++
+ Cl+ Cl--
B.B. CC66HH1212OO66 + 6 O+ 6 O22 6 CO6 CO22 + 6 H+ 6 H22OO
C.C. ATPATP ADP + PADP + Pii
D.D. glucose + fructoseglucose + fructose sucrosesucrose
E.E. all of the aboveall of the above
The answer is ___ because________________
The answer is not ___ because________________
45. Today you learned about
energy
Create an acrostic for the wordCreate an acrostic for the word
ENERGYENERGY
E - Entropy - which is the…E - Entropy - which is the…
NN
EE
RR
GG
YY
47. Cells need energy to do workCells need energy to do work
Cells do 3 main kinds of work:Cells do 3 main kinds of work:
MechanicalMechanical – contraction, movement– contraction, movement
TransportTransport – movement of substances– movement of substances
against the concentration gradientagainst the concentration gradient
ChemicalChemical – synthesis of polymers from– synthesis of polymers from
monomersmonomers
48. ATP provides the energy for cell workATP provides the energy for cell work
Before cells can use the energy of sunlight orBefore cells can use the energy of sunlight or
that stored in carbohydrates, they mustthat stored in carbohydrates, they must
transfer the energytransfer the energy to molecules of ATPto molecules of ATP
ATP powers the cell by using the energy fromATP powers the cell by using the energy from
exergonic reactions to drive endergonicexergonic reactions to drive endergonic
reactionsreactions
49. What is ATP?What is ATP?
Adenosine triphosphate – aAdenosine triphosphate – a
nucleotidenucleotide
Composed of adenine, ribose, and threeComposed of adenine, ribose, and three
phosphate groupsphosphate groups
Cell's chief energy source forCell's chief energy source for
cellular work.cellular work.
50. ATP structureATP structure
BondsBonds betweenbetween
phosphate groupsphosphate groups
can becan be brokenbroken offoff byby
hydrolysishydrolysis
This is an exergonicThis is an exergonic
reaction and releasesreaction and releases
7.3 kcal of7.3 kcal of
energy/mole of ATPenergy/mole of ATP
This is a bit more energyThis is a bit more energy
than most other moleculesthan most other molecules
release becauserelease because all 3all 3
phosphate groups arephosphate groups are
negatively chargednegatively charged and areand are
repelled by each otherrepelled by each other
52. ATPATP
When ATP donatesWhen ATP donates
a phosphate groupa phosphate group
((phosphorylationphosphorylation) to) to
another molecule,another molecule,
that molecule isthat molecule is
phosphorylated andphosphorylated and
becomesbecomes primedprimed andand
energizedenergized forfor
specific reactionsspecific reactions
53. Energy is released from storage moleculesEnergy is released from storage molecules
like ATPlike ATP
inin controlledcontrolled
stepssteps via avia a
series ofseries of
intermediateintermediate
moleculesmolecules
54. Similar to staircases where electronsSimilar to staircases where electrons
flow downflow down the steps from the topthe steps from the top
(most energy) to the bottom(most energy) to the bottom
(least(least
energy),energy),
releasing areleasing a
small amountsmall amount
at each stepat each step
Electron Transport SystemElectron Transport System
55. Energy isEnergy is
harnessed toharnessed to
move hydrogenmove hydrogen
ionsions
HH++
ionsions
establishestablish
pHpH
and electricand electric
gradientsgradients
Electron Transport SystemElectron Transport System
56. The ATP ADP CycleThe ATP ADP Cycle
More ATP isMore ATP is
producedproduced fromfrom
ADP and PADP and Pii byby
using theusing the
energyenergy
releasedreleased fromfrom
exergonicexergonic
reactionsreactions
This can be done VERYThis can be done VERY
quickly ~10 million moleculesquickly ~10 million molecules
of ATP/second/cellof ATP/second/cell
57. Warm up QuestionsWarm up Questions
1.1. What is phosphorylation?What is phosphorylation?
2.2. How does ATP provide the energy forHow does ATP provide the energy for
endergonic reactions?endergonic reactions?
3.3. Why do the bonds between phosphateWhy do the bonds between phosphate
groups in ATP store so much energy?groups in ATP store so much energy?
4.4. What kind of energy is in chemicalWhat kind of energy is in chemical
bonds?bonds?
59. Quick ThinkQuick Think
Which group has more free energy andWhich group has more free energy and
why?why?
Group 1 = glutamic acid + ammonia + ATPGroup 1 = glutamic acid + ammonia + ATP
Group 2 = glutamine + ADP + PGroup 2 = glutamine + ADP + Pii
61. Enzymes help drive metabolic reactionsEnzymes help drive metabolic reactions
Even if a reaction isEven if a reaction is
spontaneous, it mayspontaneous, it may
happen toohappen too
slowlyslowly to supportto support
the cellthe cell
Enzymes speed upEnzymes speed up
the process ofthe process of
chemical reactionschemical reactions
62. Living SystemsLiving Systems
ALL cellularALL cellular
metabolismmetabolism
(reactions)(reactions)
involveinvolve
enzymesenzymes
63. Begins with a specificBegins with a specific
molecule, which is alteredmolecule, which is altered
through a series of steps,through a series of steps,
and ends with a specificand ends with a specific
productproduct
How it works:How it works:
Product 1 + (enzyme 1)-->
Product 2 + (enzyme 2)-->
Product 3 + (enzyme 3)-->
Final ProductFinal Product
Enzyme Pathways (aka metabolic pathways)Enzyme Pathways (aka metabolic pathways)
64. Chemical reactions involve both bondChemical reactions involve both bond
breaking and bond formingbreaking and bond forming
Synthesizing molecules =Synthesizing molecules = anabolic pathwaysanabolic pathways
Breaking down molecules =Breaking down molecules = catabolic pathwayscatabolic pathways
Complete the sentence:
Endergonic/ExergonicEndergonic/Exergonic reactions occur along
anabolic/catabolicanabolic/catabolic pathways because
_____________________
65. Activation energyActivation energy
Activation energyActivation energy (aka free energy of(aka free energy of
activation) – the energy required to startactivation) – the energy required to start
a reactiona reaction
The reactants have to be energized to anThe reactants have to be energized to an
unstable state so that they can breakunstable state so that they can break
their bonds and be primed for new bondstheir bonds and be primed for new bonds
to formto form
66. So activation energy is…So activation energy is…
The energy needed by molecules inThe energy needed by molecules in
order to reactorder to react
67. Reaction RateReaction Rate
Initial accelerationInitial acceleration as enzymes & substratesas enzymes & substrates
collidecollide
Transition stateTransition state
Collisions atCollisions at
maximum ratemaximum rate
DecelerationDeceleration
as substratesas substrates
used upused up
68. Inorganic CatalystsInorganic Catalysts
HeatHeat
Activation energy is often supplied in the formActivation energy is often supplied in the form
of heat that the reactants absorb from theof heat that the reactants absorb from the
surroundingssurroundings
LightLight
PhotosynthesisPhotosynthesis
ElectricityElectricity
Decomposition of waterDecomposition of water
69. Activation energyActivation energy
Heat speeds up reactions – BUTHeat speeds up reactions – BUT
harms cellsharms cells
tends to speed up all reactions, not just thetends to speed up all reactions, not just the
ones the cell needsones the cell needs
Instead, cells use enzymes to catalyzeInstead, cells use enzymes to catalyze
reactionsreactions
70. Increasing Reaction RateIncreasing Reaction Rate
Enzymes lowerEnzymes lower
the activationthe activation
energyenergy byby
allowing theallowing the
reactants toreactants to
absorb enoughabsorb enough
energy to reachenergy to reach
the transitionthe transition
state at normalstate at normal
temperaturestemperatures
74. Organic CatalystsOrganic Catalysts
ENZYMESENZYMES
Have a Specific shapeHave a Specific shape
Active siteActive site:: crevice where substrate binds tocrevice where substrate binds to
enzyme during a reactionenzyme during a reaction
75. EnzymesEnzymes
Usually made up of 2 or more subunitsUsually made up of 2 or more subunits
What level ofWhat level of
protein structureprotein structure
is this?is this?
This?This?
76. SubstrateSubstrate
The reactant an enzyme works on isThe reactant an enzyme works on is
called itcalled it’s substrate – specific to each’s substrate – specific to each
enzymeenzyme
The enzyme-
substrate
complex
78. Induced FitInduced Fit
Binding of a substrate causes aBinding of a substrate causes a change inchange in
shapeshape, INDUCING an even closer fit with, INDUCING an even closer fit with
substratesubstrate
This is called the inducedThis is called the induced fitfit
Like a handshake
79. Increasing enzyme actionIncreasing enzyme action
CooperativityCooperativity –– the binding of onethe binding of one
substrate molecule primes all the othersubstrate molecule primes all the other
subunits of that enzyme for binding tosubunits of that enzyme for binding to
additional substrate moleculesadditional substrate molecules
80. Enzyme activityEnzyme activity
Substrate bonded to enzyme with weakSubstrate bonded to enzyme with weak
bonds (hydrogen bonds or ionic bonds)bonds (hydrogen bonds or ionic bonds)
Enzyme catalyzes the reactionEnzyme catalyzes the reaction
Products are released and enzyme isProducts are released and enzyme is
free to do it againfree to do it again
Enzymes work very fast ~ 1000Enzymes work very fast ~ 1000
reactions/secondreactions/second
81. Enzyme activityEnzyme activity
Most reactions are reversibleMost reactions are reversible
Enzymes can catalyze the reaction inEnzymes can catalyze the reaction in
either directioneither direction
Always work in the direction towardAlways work in the direction toward
equilibriumequilibrium
82. Enzyme activityEnzyme activity
Enzymes help by:Enzymes help by:
Orienting theOrienting the
reactants properlyreactants properly
so they can reactso they can react
Stretching andStretching and
bending reactantsbending reactants
to help them get toto help them get to
the transition statethe transition state
fasterfaster
Provides aProvides a
microenvironmentmicroenvironment
more suitable formore suitable for
the reaction tothe reaction to
occuroccur
86. Inorganic InhibitorsInorganic Inhibitors
HEATHEAT
Breaks bonds, causes enzymes toBreaks bonds, causes enzymes to
lose their tertiary shapelose their tertiary shape
Some enzymes will "snap back" onSome enzymes will "snap back" on
coolingcooling
Some never regain their structureSome never regain their structure
88. Competitive InhibitorsCompetitive Inhibitors
Blocks the active siteBlocks the active site
Substrate cannot bond toSubstrate cannot bond to
enzymeenzyme
Inhibiting Enzyme ActionInhibiting Enzyme Action
89. Allosteric INHIBITORAllosteric INHIBITOR
MoleculesMolecules
aka non-competitive inhibitorsaka non-competitive inhibitors
attaches to a site that isattaches to a site that is
not the active sitenot the active site
Changes the shape of theChanges the shape of the
enzymeenzyme
90. IRREVERSIBLE INHIBITIONIRREVERSIBLE INHIBITION
Substances that permanently change the tertiarySubstances that permanently change the tertiary
shape of an enzyme,shape of an enzyme, DENATURING ITDENATURING IT
Usually due to covalent bonding with the enzymeUsually due to covalent bonding with the enzyme
Many toxins and poisons do thisMany toxins and poisons do this
Nerve gases, penicillinNerve gases, penicillin
Inhibiting Enzyme ActionInhibiting Enzyme Action
91. Feedback InhibitionFeedback Inhibition
Pathway has a product which blocks the actionPathway has a product which blocks the action
of enzymes early in the pathwayof enzymes early in the pathway (turns itself(turns itself
off!)off!)
92. Inhibiting Enzyme ActionInhibiting Enzyme Action
Not always a bad thingNot always a bad thing
It is one way the cell controls chemicalIt is one way the cell controls chemical
reactionsreactions
93. Quick ThinkQuick Think
What are some ways thatWhat are some ways that
enzyme activity can beenzyme activity can be
inhibited?inhibited?
Why is this good for livingWhy is this good for living
systems?systems?
95. Enzyme activityEnzyme activity
Some enzymes requireSome enzymes require
cofactorscofactors
NonproteinNonprotein
Organic or inorganicOrganic or inorganic
If organic called aIf organic called a
coenzymecoenzyme
Permanently attached orPermanently attached or
loosely attachedloosely attached
Help enzyme functionHelp enzyme function
96. Allosteric regulationAllosteric regulation
Allosteric moleculesAllosteric molecules must bemust be
present for some enzymes to workpresent for some enzymes to work
properlyproperly
Often ions orOften ions or
vitaminsvitamins
Regulating Enzyme ActionRegulating Enzyme Action
AllostericAllosteric
moleculemolecule
binds tobinds to
enzyme andenzyme and
changes it to achanges it to a
functionalfunctional
shapeshape
97. Increasing Enzyme ActionIncreasing Enzyme Action
Allosteric ACTIVATOR moleculesAllosteric ACTIVATOR molecules
Holds substrate in place or causes aHolds substrate in place or causes a
shape change in the enzyme so itshape change in the enzyme so it “fits”“fits”
substrates bettersubstrates better
99. Enzyme PathwaysEnzyme Pathways
AdvantagesAdvantages
Similar enzymes canSimilar enzymes can
bebe segregatedsegregated within awithin a
cellcell
Little accumulationLittle accumulation ofof
intermediate productsintermediate products
Removes product ofRemoves product of
each reaction from theeach reaction from the
system so thatsystem so that
CHEMICALCHEMICAL
EQUILIBRIUMEQUILIBRIUM isis nevernever
reachedreached
mitochondrion
Editor's Notes
Say: doesn’t this contradict the first law? No. The energy is not lost as in gone forever, it is lost in the sense that it is no longer available to do useful work. It is converted to heat and dissipates into the environment.