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Unsupervised Deep Learning for Accelerated High
Quality Echocardiography
ABSTRACT
 Visual quality and temporal resolution trade-off is a bottleneck for many echocardiography applications.
 Conventional acceleration methods doesn’t remove noise and work only for limited acceleration factors.
 Various machine learning algorithms have been designed to reduce blocking artifacts using either high-quality raw RF data or time-delayed baseband IQ
data. Unfortunately, in many lower-end commercial systems, such data are not accessible.
 We propose an image domain framework using CycleGAN for high quality accelerated echocardiography that simultaneously reduces the blocking
artifacts and the speckle noise.
 The method is evaluated on real in-vivo and phantom data and achieves notable performance gain.
CONCLUSIONS
 A Universal image-domain-based method is proposed for the removal of speckle-noise and blocking artifacts from cardiac images.
 By synergistically learning from multiple datasets, the proposed method efficaciously generates a better quality image from as little as only 24 transmit events,
which is not possible from an analytic form of a standard MLA method.
 The design was evaluated through extensive tests on in vivo and phantom data for standard quality measures.
 In the current study, we intended to show a proof of concept for unpaired learning for high-quality ECHO and we believe that a clinical verification is necessary.
 The proposed scheme may substantially help in designing low-powered, high quality accelerated echocardiography systems.
ACKNOWLEDGEMENTS
This work was supported by the National Research
Foundation of Korea grant NRF-
2020R1A2B5B03001980.
REFERENCES
[1] Jun-Yan Zhu, Taesung Park, Phillip Isola, and Alexei A Efros, “Unpaired image-to-image
translation using cycle-consistent adversarial networks,” in Proceedings of the IEEE international
conference on computer vision, 2017, pp. 2223–2232.
[2] Lei Zhu, Chi-Wing Fu, Michael S Brown, and Pheng-Ann Heng, “A non-local low-rank
framework for ultrasound speckle reduction,” in Proceedings of the IEEE Conference on Computer
Vision and Pattern Recognition, 2017, pp. 5650–5658.
Shujaat Khan1, Jaeyoung Huh1 and Jong Chul Ye1
1 Bio Imaging. Signal Processing & Learning Lab (BISPL), Dept. of Bio & Brain Engineering, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon
305-701, Korea.
https://bispl.weebly.com/
METHOD The architecture of the proposed network
single-line acquisition (SLA) mode with 96-tranmit events
(scanlines) and 64-receive and 128-transmit channels data.
Non-local low-rank based speckle free ultrasound [2]
Target styles
For training purpose, 55 phantom and 297 in vivo samples of 5 volunteers were used.
For the test purpose, 50 phantom and 192 in vivo frames of 2 volunteers were used.
Low-quality accelerated ECHO images are generated using 2, 3, 4 and 6-MLA.
Each US image has depth ranges between 2580 mm, and is scaled to 40 dB dynamic range.
In total, there are 55 + 297 × 5 = 1760 training and 50 + 192 × 5 = 1210 test images.
It is important to specify that unpaired dataset is used during the training.
RESULTS
Reconstruction results from unseen samples acquired from the ATS-539 phantom, and Cardiac region of a subject using SP1-5 phased
array probe operating at 3MHz center frequency on E-CUBE 12R US system (Alpinion, Korea).
The proposed method effectively enhances the visual quality for all acceleration factors.
 However, with higher acceleration factors, e.g., 6-MLA, the block artifacts are becoming prominent and
recovery to target quality is not ideal.
The average reconstruction time for an image was around 19:4 (milliseconds).
0 dB
-40 dB
6-MLA
1
0
0.5
Lateral length(mm)
0 70
35 105 140
Axial
depth(mm)
60
45
30
15
0
75
Input
2-MLA
Output
3-MLA 4-MLA
|Target-Input|
|Target-Output|
1
0
0.5
Lateral length(mm)
0 70
35 105 140
Axial
depth(mm)
60
45
30
15
0
75
Input
Output
|Target-Input|
|Target-Output|
(a)
B-mode
images
(b)
Normalized
residual
images
Target
(Filtered-SLA)
Target
(Filtered-SLA)
THEORY
Unsupervised learning using CycleGAN [1]
Here 𝜀𝜀𝑐𝑐𝑐𝑐𝑐𝑐𝑐𝑐𝑐𝑐, and 𝜀𝜀𝐺𝐺𝐺𝐺𝐺𝐺 are cycle, and adversarial-loss, respectively, and 𝛼𝛼 is a loss mixing parameter.
Geometric view of unsupervised learning:
Here, the goal of optimal transport is to find 𝐺𝐺𝐴𝐴𝐴𝐴 and 𝐺𝐺𝐵𝐵𝐵𝐵 that minimize the
Wasserstein-1 distance between 𝜇𝜇 and 𝜇𝜇𝐵𝐵, and 𝜈𝜈 and 𝜈𝜈𝐴𝐴, respectively.
The objective is to learn optimal path for A B
𝐺𝐺𝐴𝐴𝐴𝐴
𝜈𝜈𝐴𝐴
𝜇𝜇𝐵𝐵
𝜇𝜇
𝜈𝜈
𝐺𝐺𝐵𝐵𝐵𝐵
A B
ABSTRACT
Visual quality and temporal resolution trade-off is a bottleneck for many echocardiography applications.
Conventional acceleration methods doesn’t remove noise and work only for limited acceleration factors.
Various machine learning algorithms have been designed to reduce blocking artifacts using either high-quality raw RF data or time-delayed baseband IQ data.
Unfortunately, in many lower-end commercial systems, such data are not accessible.
We propose an image domain framework using CycleGAN for high quality accelerated echocardiography that simultaneously reduces the blocking artifacts and
the speckle noise.
The method is evaluated on real in-vivo and phantom data and achieves notable performance gain.
THEORY Unsupervised learning using CycleGAN [1]
Here 𝜀𝜀𝑐𝑐𝑐𝑐𝑐𝑐𝑐𝑐𝑐𝑐, and 𝜀𝜀𝐺𝐺𝐺𝐺𝐺𝐺 are cycle, and adversarial-loss, respectively, and 𝛼𝛼 is a loss mixing parameter.
Geometric view of unsupervised learning:
Here, the goal of optimal transport is to find 𝐺𝐺𝐴𝐴𝐴𝐴 and 𝐺𝐺𝐵𝐵𝐵𝐵 that
minimize the Wasserstein-1 distance between 𝜇𝜇 and 𝜇𝜇𝐵𝐵, and 𝜈𝜈
and 𝜈𝜈𝐴𝐴, respectively.
The objective is to learn optimal path for A B
𝐺𝐺𝐴𝐴𝐴𝐴
𝜈𝜈𝐴𝐴
𝜇𝜇𝐵𝐵
𝜇𝜇
𝜈𝜈
𝐺𝐺𝐵𝐵𝐵𝐵
A B
METHOD The architecture of the proposed network
single-line acquisition (SLA) mode with 96-tranmit events
(scanlines) and 64-receive and 128-transmit channels data.
Non-local low-rank based speckle free ultrasound [2]
Target styles
For training purpose, 55 phantom and 297 in vivo samples of 5 volunteers were used.
For the test purpose, 50 phantom and 192 in vivo frames of 2 volunteers were used.
Low-quality accelerated ECHO images are generated using 2, 3, 4 and 6-MLA.
Each US image has depth ranges between 2580 mm, and is scaled to 40 dB dynamic range.
In total, there are 55 + 297 × 5 = 1760 training and 50 + 192 × 5 = 1210 test images.
It is important to specify that unpaired dataset is used during the training.
RESULTS
Reconstruction results from unseen samples acquired from the ATS-539 phantom, and Cardiac region of a subject using SP1-5 phased array probe
operating at 3MHz center frequency on E-CUBE 12R US system (Alpinion, Korea).
The proposed method effectively enhances the visual quality for all acceleration factors.
 However, with higher acceleration factors, e.g., 6-MLA, the block artifacts are becoming prominent and recovery to target
quality is not ideal.
The average reconstruction time for an image was around 19:4 (milliseconds).
0 dB
-40 dB
6-MLA
1
0
0.5
Lateral length(mm)
0 70
35 105 140
Axial
depth(mm)
60
45
30
15
0
75
Input
2-MLA
Output
3-MLA 4-MLA
|Target-Input|
|Target-Output|
1
0
0.5
Lateral length(mm)
0 70
35 105 140
Axial
depth(mm)
60
45
30
15
0
75
Input
Output
|Target-Input|
|Target-Output|
(a)
B-mode
images
(b)
Normalized
residual
images
Target
(Filtered-SLA)
Target
(Filtered-SLA)
CONCLUSIONS
A Universal image-domain-based method is proposed for the removal of speckle-noise and blocking artifacts from cardiac images.
By synergistically learning from multiple datasets, the proposed method efficaciously generates a better quality image from as little as only 24 transmit events,
which is not possible from an analytic form of a standard MLA method.
The design was evaluated through extensive tests on in vivo and phantom data for standard quality measures.
In the current study, we intended to show a proof of concept for unpaired learning for high-quality ECHO and we believe that a clinical verification is necessary.
The proposed scheme may substantially help in designing low-powered, high quality accelerated echocardiography systems.
ACKNOWLEDGEMENTS
This work was supported by the National Research
Foundation of Korea grant NRF-2020R1A2B5B03001980.
REFERENCES
[1] Jun-Yan Zhu, Taesung Park, Phillip Isola, and Alexei A Efros, “Unpaired image-to-image
translation using cycle-consistent adversarial networks,” in Proceedings of the IEEE international
conference on computer vision, 2017, pp. 2223–2232.
[2] Lei Zhu, Chi-Wing Fu, Michael S Brown, and Pheng-Ann Heng, “A non-local low-rank
framework for ultrasound speckle reduction,” in Proceedings of the IEEE Conference on Computer
Vision and Pattern Recognition, 2017, pp. 5650–5658.

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Unsupervised Deep Learning for Accelerated High Quality Echocardiography

  • 1. Unsupervised Deep Learning for Accelerated High Quality Echocardiography ABSTRACT  Visual quality and temporal resolution trade-off is a bottleneck for many echocardiography applications.  Conventional acceleration methods doesn’t remove noise and work only for limited acceleration factors.  Various machine learning algorithms have been designed to reduce blocking artifacts using either high-quality raw RF data or time-delayed baseband IQ data. Unfortunately, in many lower-end commercial systems, such data are not accessible.  We propose an image domain framework using CycleGAN for high quality accelerated echocardiography that simultaneously reduces the blocking artifacts and the speckle noise.  The method is evaluated on real in-vivo and phantom data and achieves notable performance gain. CONCLUSIONS  A Universal image-domain-based method is proposed for the removal of speckle-noise and blocking artifacts from cardiac images.  By synergistically learning from multiple datasets, the proposed method efficaciously generates a better quality image from as little as only 24 transmit events, which is not possible from an analytic form of a standard MLA method.  The design was evaluated through extensive tests on in vivo and phantom data for standard quality measures.  In the current study, we intended to show a proof of concept for unpaired learning for high-quality ECHO and we believe that a clinical verification is necessary.  The proposed scheme may substantially help in designing low-powered, high quality accelerated echocardiography systems. ACKNOWLEDGEMENTS This work was supported by the National Research Foundation of Korea grant NRF- 2020R1A2B5B03001980. REFERENCES [1] Jun-Yan Zhu, Taesung Park, Phillip Isola, and Alexei A Efros, “Unpaired image-to-image translation using cycle-consistent adversarial networks,” in Proceedings of the IEEE international conference on computer vision, 2017, pp. 2223–2232. [2] Lei Zhu, Chi-Wing Fu, Michael S Brown, and Pheng-Ann Heng, “A non-local low-rank framework for ultrasound speckle reduction,” in Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2017, pp. 5650–5658. Shujaat Khan1, Jaeyoung Huh1 and Jong Chul Ye1 1 Bio Imaging. Signal Processing & Learning Lab (BISPL), Dept. of Bio & Brain Engineering, KAIST, 291 Daehak-ro, Yuseong-gu, Daejeon 305-701, Korea. https://bispl.weebly.com/ METHOD The architecture of the proposed network single-line acquisition (SLA) mode with 96-tranmit events (scanlines) and 64-receive and 128-transmit channels data. Non-local low-rank based speckle free ultrasound [2] Target styles For training purpose, 55 phantom and 297 in vivo samples of 5 volunteers were used. For the test purpose, 50 phantom and 192 in vivo frames of 2 volunteers were used. Low-quality accelerated ECHO images are generated using 2, 3, 4 and 6-MLA. Each US image has depth ranges between 2580 mm, and is scaled to 40 dB dynamic range. In total, there are 55 + 297 × 5 = 1760 training and 50 + 192 × 5 = 1210 test images. It is important to specify that unpaired dataset is used during the training. RESULTS Reconstruction results from unseen samples acquired from the ATS-539 phantom, and Cardiac region of a subject using SP1-5 phased array probe operating at 3MHz center frequency on E-CUBE 12R US system (Alpinion, Korea). The proposed method effectively enhances the visual quality for all acceleration factors.  However, with higher acceleration factors, e.g., 6-MLA, the block artifacts are becoming prominent and recovery to target quality is not ideal. The average reconstruction time for an image was around 19:4 (milliseconds). 0 dB -40 dB 6-MLA 1 0 0.5 Lateral length(mm) 0 70 35 105 140 Axial depth(mm) 60 45 30 15 0 75 Input 2-MLA Output 3-MLA 4-MLA |Target-Input| |Target-Output| 1 0 0.5 Lateral length(mm) 0 70 35 105 140 Axial depth(mm) 60 45 30 15 0 75 Input Output |Target-Input| |Target-Output| (a) B-mode images (b) Normalized residual images Target (Filtered-SLA) Target (Filtered-SLA) THEORY Unsupervised learning using CycleGAN [1] Here 𝜀𝜀𝑐𝑐𝑐𝑐𝑐𝑐𝑐𝑐𝑐𝑐, and 𝜀𝜀𝐺𝐺𝐺𝐺𝐺𝐺 are cycle, and adversarial-loss, respectively, and 𝛼𝛼 is a loss mixing parameter. Geometric view of unsupervised learning: Here, the goal of optimal transport is to find 𝐺𝐺𝐴𝐴𝐴𝐴 and 𝐺𝐺𝐵𝐵𝐵𝐵 that minimize the Wasserstein-1 distance between 𝜇𝜇 and 𝜇𝜇𝐵𝐵, and 𝜈𝜈 and 𝜈𝜈𝐴𝐴, respectively. The objective is to learn optimal path for A B 𝐺𝐺𝐴𝐴𝐴𝐴 𝜈𝜈𝐴𝐴 𝜇𝜇𝐵𝐵 𝜇𝜇 𝜈𝜈 𝐺𝐺𝐵𝐵𝐵𝐵 A B
  • 2. ABSTRACT Visual quality and temporal resolution trade-off is a bottleneck for many echocardiography applications. Conventional acceleration methods doesn’t remove noise and work only for limited acceleration factors. Various machine learning algorithms have been designed to reduce blocking artifacts using either high-quality raw RF data or time-delayed baseband IQ data. Unfortunately, in many lower-end commercial systems, such data are not accessible. We propose an image domain framework using CycleGAN for high quality accelerated echocardiography that simultaneously reduces the blocking artifacts and the speckle noise. The method is evaluated on real in-vivo and phantom data and achieves notable performance gain.
  • 3. THEORY Unsupervised learning using CycleGAN [1] Here 𝜀𝜀𝑐𝑐𝑐𝑐𝑐𝑐𝑐𝑐𝑐𝑐, and 𝜀𝜀𝐺𝐺𝐺𝐺𝐺𝐺 are cycle, and adversarial-loss, respectively, and 𝛼𝛼 is a loss mixing parameter. Geometric view of unsupervised learning: Here, the goal of optimal transport is to find 𝐺𝐺𝐴𝐴𝐴𝐴 and 𝐺𝐺𝐵𝐵𝐵𝐵 that minimize the Wasserstein-1 distance between 𝜇𝜇 and 𝜇𝜇𝐵𝐵, and 𝜈𝜈 and 𝜈𝜈𝐴𝐴, respectively. The objective is to learn optimal path for A B 𝐺𝐺𝐴𝐴𝐴𝐴 𝜈𝜈𝐴𝐴 𝜇𝜇𝐵𝐵 𝜇𝜇 𝜈𝜈 𝐺𝐺𝐵𝐵𝐵𝐵 A B
  • 4. METHOD The architecture of the proposed network single-line acquisition (SLA) mode with 96-tranmit events (scanlines) and 64-receive and 128-transmit channels data. Non-local low-rank based speckle free ultrasound [2] Target styles For training purpose, 55 phantom and 297 in vivo samples of 5 volunteers were used. For the test purpose, 50 phantom and 192 in vivo frames of 2 volunteers were used. Low-quality accelerated ECHO images are generated using 2, 3, 4 and 6-MLA. Each US image has depth ranges between 2580 mm, and is scaled to 40 dB dynamic range. In total, there are 55 + 297 × 5 = 1760 training and 50 + 192 × 5 = 1210 test images. It is important to specify that unpaired dataset is used during the training.
  • 5. RESULTS Reconstruction results from unseen samples acquired from the ATS-539 phantom, and Cardiac region of a subject using SP1-5 phased array probe operating at 3MHz center frequency on E-CUBE 12R US system (Alpinion, Korea). The proposed method effectively enhances the visual quality for all acceleration factors.  However, with higher acceleration factors, e.g., 6-MLA, the block artifacts are becoming prominent and recovery to target quality is not ideal. The average reconstruction time for an image was around 19:4 (milliseconds). 0 dB -40 dB 6-MLA 1 0 0.5 Lateral length(mm) 0 70 35 105 140 Axial depth(mm) 60 45 30 15 0 75 Input 2-MLA Output 3-MLA 4-MLA |Target-Input| |Target-Output| 1 0 0.5 Lateral length(mm) 0 70 35 105 140 Axial depth(mm) 60 45 30 15 0 75 Input Output |Target-Input| |Target-Output| (a) B-mode images (b) Normalized residual images Target (Filtered-SLA) Target (Filtered-SLA)
  • 6. CONCLUSIONS A Universal image-domain-based method is proposed for the removal of speckle-noise and blocking artifacts from cardiac images. By synergistically learning from multiple datasets, the proposed method efficaciously generates a better quality image from as little as only 24 transmit events, which is not possible from an analytic form of a standard MLA method. The design was evaluated through extensive tests on in vivo and phantom data for standard quality measures. In the current study, we intended to show a proof of concept for unpaired learning for high-quality ECHO and we believe that a clinical verification is necessary. The proposed scheme may substantially help in designing low-powered, high quality accelerated echocardiography systems. ACKNOWLEDGEMENTS This work was supported by the National Research Foundation of Korea grant NRF-2020R1A2B5B03001980. REFERENCES [1] Jun-Yan Zhu, Taesung Park, Phillip Isola, and Alexei A Efros, “Unpaired image-to-image translation using cycle-consistent adversarial networks,” in Proceedings of the IEEE international conference on computer vision, 2017, pp. 2223–2232. [2] Lei Zhu, Chi-Wing Fu, Michael S Brown, and Pheng-Ann Heng, “A non-local low-rank framework for ultrasound speckle reduction,” in Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2017, pp. 5650–5658.