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Image Reconstruction
in Nuclear Medicine
Seyedeh Shokoofeh Mousavi Gazafroudi
Seyedeh Shabnam Mousavi Gazafroudi
2
Outline
 Introduction & Definition
 Image reconstruction’s method
– Analytical methods
– Iterative methods
12/17/2017
3
INTRODUCTION
 Images of the inside of the human body can be obtained non
invasively using tomographic acquisition and processing
technique
 these techniques are used to obtain images of gamma emitter
distribution after its administration
 reconstructed images are obtained given a set of their
projections using rotating gamma camera
12/17/2017
4
Definition
 Ray: a single transmission measurement through the patient made
by a single detector at a given moment in time
 Projection: a series of rays that pass through the patient at the
same orientation
 Sinogram : a type of display that shows the data acquired for one
slice before reconstruction
 Line of response: a line in space that determined by computer of
scanner after detection of a coincidence 12/17/2017
5
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6
Procedure
 the purpose is to acquire a large number of transmission
measurements through the patient at different position
 Prior to the reconstruction, the LOR data is often rebind into a
sinogram . This intermediate data representation corresponds to
projection data that can be used by conventional tomographic
reconstruction codes
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7
RECONSTRUCTION
METHODS
Analytical
Back projection
Filtered back
projection
Gridding
Iterative
Algebraic
ART, MART, SMART
Statistical
Weighted
CG, CD, ISRA
Likelihood
EM, OSEM, MLEM,
SAGE
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8
Reconstruction algorithm
G = A . F
Measures Model Image
Analytical reconstructions (e.g. FBP) Iterative reconstructions (e.g. MLEM or OSEM)
F(0) G’ = A . F(k) Compare G’ with G
F(k+1) = F(k) x (or +) G
A -1.G = F
Measures ImageModel -1
12/17/2017
9
Analytical methods
 Are based on a continuous modelling and the reconstruction process
consists of the inversion of measurement equations
 Image is “Radon transform” of radioactive distribution in the body
 The most frequently used is the filtered back-projection (FBP) algorithm
 Are efficient and elegant but they are unable to handle complicated factors
12/17/2017
10
Analytical algorithms properties
 very fast
 Direct inversion of the projection formula
 Corrections for physical factors are difficult
 It needs a lot of filtering trade-off between blurring and noise
 Quantitative imaging is difficult
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3
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Iterative methods
 The principle is to find a solution to reconstruct an image of a
tomographic slice from projection by successive estimates
 Are more versatile but less efficient
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Iterative algorithms properties
 Amplification of noise
 long calculation time
 discreetness of data included in the model
 it is easy to model and handle projection noise & imaging physics
 quantitative imaging is possible
12/17/2017
21
Iterative Algorithm steps
(1) Make the first arbitrary estimate of the slice (homogeneous image F(0))
(2) Project the estimated slice into its projections (G’)
(3) Compare the projections of the estimate with measured projections
(4) Obtain the correction factors
(4) Stop or continue:
if the correction factors are approaching zero,
if they do not change in subsequent iterations,
if the maximum number of iterations was achieved, then finish; otherwise
(5) Apply corrections to the estimate thus make the new estimate of the slice
(6) Go to step (2)
F(0) G’ = A . F(k)
Compare G’ with G
F(k+1) = F(k) x (or +) G
G = A . F
12/17/2017
22
Iterative reconstruction steps
Current
estimate Measured
projection
Compare
(e.g. – or / )
Error
projection
projection
Estimated
projection
image space projection space
backprojection
Error
image
Update
Iteration 1
12/17/2017
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Iterative steps
Current
estimate
Measured
projection
Compare
(e.g. - or / )
Error
projection
projection Estimated
projection
image space projection space
backprojectionError
image
Update
Estimated
projection
Estimated
projection
Iteration 2
12/17/2017
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Iterative Algorithm
Current
estimate
Measured
projection
Compare
(e.g. - or / )
New
projection
projection
image space projection space
backprojection
new
image
Estimated
projection
Estimated
projection
Estimated
projection
Estimated
projection
Iteration N
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RECONSTRUCTION TECHNIQUES
 Projections seen as set of simultaneous equations.
 Kaczmarz method
Iterative method.
Implemented easily.
 Assumptions:
Discrete pixels.
Image density is constant within each cell.
 Equations
MMMNMM
NN
NN
pfwfwfw
pfwfwfw
pfwfwfw







2211
22222121
11212111
Contribution factor of
the nth image element
to the mth ray sum.
12/17/2017
27
Algebraic Reconstruction Techniques
 Characteristics worth:
ART proceed ray by ray and it is iterative
Small angles between hyperplanes
Large number or iterations
It should be reduced by using optimized ray-access schemes.
M>N noisy measurements oscillate in the neighborhood of
the intersections of the hyperplanes.
M<N under-determined.
Any a priori information about image is easily introduced into
the iterative procedure.
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ART
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MART
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Iterative methods
 Iterative statistical methods are based on iterative correction algorithms .
Iterative methods are relatively easy to model:
 the reconstruction starts using an initial estimate of the image (generally a
constant image),
 projection data is computed from this image,
 the estimated projections are compared with the measured projections,
 corrections are made to correct the estimated image, and
 the algorithm iterates until convergence of the estimated and measured
projection sets.
12/17/2017
37
Iterative Method
Statistical
 Statistical Nature of data
 Signal is due to emitted photons not amount of activity in organs
 For a uniform and constant amount of activity, there is not uniform
and constant number of emission
 Number of photons emitted from each voxel and in a constant time
follows Poisson distribution
12/17/2017
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Maximum Likelihood reconstruction
 ML-EM and its derivative, OS-EM are gold standard reconstruction techniques in nuclear
medicine.
 They suffer from factors that limit the quantitative analysis of their results, hence limit their
exploitation during the treatment planning process and during treatment monitoring.
 ML-EM usually requires approximately 20-50 iterations to reach an acceptable solution.
Considering that ML-EM requires one forward projection and one back projection at each
iteration, this overall processing time is considerably more than the filtered back projection
approach, but leads to a potentially more accurate reconstruction.
12/17/2017
39
Ordered Subsets Expectation Maximization
 OSEM was introduced in 1994 [27] to reduce reconstruction time of
conventional ML-EM
 This slight modification of ML-EM uses subsets of the entire data set for
each image update
 There are many approaches for dividing the projection space into subsets.
Most approaches use non-overlapping subsets
12/17/2017
40
Conjugate Gradient
 In CG algorithms, the correction is additive and may generate negative
values in the reconstructed image.
 Each new estimate is found by adding a quantity to the current estimate
 the conjugate gradient algorithm applied to g=Af converges in a number of
iterations equal to the number m of equations of the system
 because of rounding errors in the determination of the conjugate
directions, the solution is not reached in m iterations.
12/17/2017
41
Filtered back-projection
 Very fast
 Direct inversion of projection
formula
 No Corrections for scatter, non-uniform attenuation and other
physical factors
 filtering - trade-off between blurring and noise
 Quantitative imaging difficult
Iterative reconstruction
 Discreteness of data included in the model
 Easy to model and handle projection noise
 Easy to model the imaging physics
 Quantitative imaging possible
 Long calculation time
12/17/2017
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THANKS FOR YOUR ATTENTION
12/17/2017

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Image reconstruction in nuclear medicine

  • 1.
  • 2. Image Reconstruction in Nuclear Medicine Seyedeh Shokoofeh Mousavi Gazafroudi Seyedeh Shabnam Mousavi Gazafroudi 2
  • 3. Outline  Introduction & Definition  Image reconstruction’s method – Analytical methods – Iterative methods 12/17/2017 3
  • 4. INTRODUCTION  Images of the inside of the human body can be obtained non invasively using tomographic acquisition and processing technique  these techniques are used to obtain images of gamma emitter distribution after its administration  reconstructed images are obtained given a set of their projections using rotating gamma camera 12/17/2017 4
  • 5. Definition  Ray: a single transmission measurement through the patient made by a single detector at a given moment in time  Projection: a series of rays that pass through the patient at the same orientation  Sinogram : a type of display that shows the data acquired for one slice before reconstruction  Line of response: a line in space that determined by computer of scanner after detection of a coincidence 12/17/2017 5
  • 7. Procedure  the purpose is to acquire a large number of transmission measurements through the patient at different position  Prior to the reconstruction, the LOR data is often rebind into a sinogram . This intermediate data representation corresponds to projection data that can be used by conventional tomographic reconstruction codes 12/17/2017 7
  • 8. RECONSTRUCTION METHODS Analytical Back projection Filtered back projection Gridding Iterative Algebraic ART, MART, SMART Statistical Weighted CG, CD, ISRA Likelihood EM, OSEM, MLEM, SAGE 12/17/2017 8
  • 9. Reconstruction algorithm G = A . F Measures Model Image Analytical reconstructions (e.g. FBP) Iterative reconstructions (e.g. MLEM or OSEM) F(0) G’ = A . F(k) Compare G’ with G F(k+1) = F(k) x (or +) G A -1.G = F Measures ImageModel -1 12/17/2017 9
  • 10. Analytical methods  Are based on a continuous modelling and the reconstruction process consists of the inversion of measurement equations  Image is “Radon transform” of radioactive distribution in the body  The most frequently used is the filtered back-projection (FBP) algorithm  Are efficient and elegant but they are unable to handle complicated factors 12/17/2017 10
  • 11. Analytical algorithms properties  very fast  Direct inversion of the projection formula  Corrections for physical factors are difficult  It needs a lot of filtering trade-off between blurring and noise  Quantitative imaging is difficult 12/17/2017 11
  • 20. Iterative methods  The principle is to find a solution to reconstruct an image of a tomographic slice from projection by successive estimates  Are more versatile but less efficient 12/17/2017 20
  • 21. Iterative algorithms properties  Amplification of noise  long calculation time  discreetness of data included in the model  it is easy to model and handle projection noise & imaging physics  quantitative imaging is possible 12/17/2017 21
  • 22. Iterative Algorithm steps (1) Make the first arbitrary estimate of the slice (homogeneous image F(0)) (2) Project the estimated slice into its projections (G’) (3) Compare the projections of the estimate with measured projections (4) Obtain the correction factors (4) Stop or continue: if the correction factors are approaching zero, if they do not change in subsequent iterations, if the maximum number of iterations was achieved, then finish; otherwise (5) Apply corrections to the estimate thus make the new estimate of the slice (6) Go to step (2) F(0) G’ = A . F(k) Compare G’ with G F(k+1) = F(k) x (or +) G G = A . F 12/17/2017 22
  • 23. Iterative reconstruction steps Current estimate Measured projection Compare (e.g. – or / ) Error projection projection Estimated projection image space projection space backprojection Error image Update Iteration 1 12/17/2017 23
  • 24. Iterative steps Current estimate Measured projection Compare (e.g. - or / ) Error projection projection Estimated projection image space projection space backprojectionError image Update Estimated projection Estimated projection Iteration 2 12/17/2017 24
  • 25. Iterative Algorithm Current estimate Measured projection Compare (e.g. - or / ) New projection projection image space projection space backprojection new image Estimated projection Estimated projection Estimated projection Estimated projection Iteration N 12/17/2017 25
  • 27. RECONSTRUCTION TECHNIQUES  Projections seen as set of simultaneous equations.  Kaczmarz method Iterative method. Implemented easily.  Assumptions: Discrete pixels. Image density is constant within each cell.  Equations MMMNMM NN NN pfwfwfw pfwfwfw pfwfwfw        2211 22222121 11212111 Contribution factor of the nth image element to the mth ray sum. 12/17/2017 27
  • 28. Algebraic Reconstruction Techniques  Characteristics worth: ART proceed ray by ray and it is iterative Small angles between hyperplanes Large number or iterations It should be reduced by using optimized ray-access schemes. M>N noisy measurements oscillate in the neighborhood of the intersections of the hyperplanes. M<N under-determined. Any a priori information about image is easily introduced into the iterative procedure. 12/17/2017 28
  • 37. Iterative methods  Iterative statistical methods are based on iterative correction algorithms . Iterative methods are relatively easy to model:  the reconstruction starts using an initial estimate of the image (generally a constant image),  projection data is computed from this image,  the estimated projections are compared with the measured projections,  corrections are made to correct the estimated image, and  the algorithm iterates until convergence of the estimated and measured projection sets. 12/17/2017 37
  • 38. Iterative Method Statistical  Statistical Nature of data  Signal is due to emitted photons not amount of activity in organs  For a uniform and constant amount of activity, there is not uniform and constant number of emission  Number of photons emitted from each voxel and in a constant time follows Poisson distribution 12/17/2017 38
  • 39. Maximum Likelihood reconstruction  ML-EM and its derivative, OS-EM are gold standard reconstruction techniques in nuclear medicine.  They suffer from factors that limit the quantitative analysis of their results, hence limit their exploitation during the treatment planning process and during treatment monitoring.  ML-EM usually requires approximately 20-50 iterations to reach an acceptable solution. Considering that ML-EM requires one forward projection and one back projection at each iteration, this overall processing time is considerably more than the filtered back projection approach, but leads to a potentially more accurate reconstruction. 12/17/2017 39
  • 40. Ordered Subsets Expectation Maximization  OSEM was introduced in 1994 [27] to reduce reconstruction time of conventional ML-EM  This slight modification of ML-EM uses subsets of the entire data set for each image update  There are many approaches for dividing the projection space into subsets. Most approaches use non-overlapping subsets 12/17/2017 40
  • 41. Conjugate Gradient  In CG algorithms, the correction is additive and may generate negative values in the reconstructed image.  Each new estimate is found by adding a quantity to the current estimate  the conjugate gradient algorithm applied to g=Af converges in a number of iterations equal to the number m of equations of the system  because of rounding errors in the determination of the conjugate directions, the solution is not reached in m iterations. 12/17/2017 41
  • 42. Filtered back-projection  Very fast  Direct inversion of projection formula  No Corrections for scatter, non-uniform attenuation and other physical factors  filtering - trade-off between blurring and noise  Quantitative imaging difficult Iterative reconstruction  Discreteness of data included in the model  Easy to model and handle projection noise  Easy to model the imaging physics  Quantitative imaging possible  Long calculation time 12/17/2017 42
  • 43. THANKS FOR YOUR ATTENTION 12/17/2017

Editor's Notes

  1. Again, one wants to solve g Af, where g is the vector of values in the sinogram, A is a given matrix, and f is the unknown vector of pixel values in the image to be reconstructed.