The OptIPuter and Its Applications


                  Invited Talk
    IEEE/LEOS Summer 2009 Topicals Meeting
           on Future Global Networks
                 July 27, 2009


                     Dr. Larry Smarr
 Director, California Institute for Telecommunications
              and Information Technology
               Harry E. Gruber Professor,
     Dept. of Computer Science and Engineering
        Jacobs School of Engineering, UCSD
Abstract



       The NSF-funded OptIPuter project enables
      user-controlled 10Gbps dedicated lightpaths
  to provide direct access to global data repositories,
 scientific instruments, and computational resources
     from “OptIPortals,” PC clusters which provide
 scalable visualization in user's campus laboratories.
I will describe applications from several disciplines of
               this global "OptIPlatform".
The OptIPuter Creates an OptIPlanet Collaboratory:
       Enabling Data-Intensive e-Research
       www.evl.uic.edu/cavern/sage




                                                            “OptIPlanet: The OptIPuter
                                                             Global Collaboratory” –
                                                                Special Section of
                                                               Future Generations
                                                               Computer Systems,
                                                               Volume 25, Issue 2,
                                                                  February 2009

       Calit2 (UCSD, UCI), SDSC, and UIC Leads—Larry Smarr PI
     Univ. Partners: NCSA, USC, SDSU, NW, TA&M, UvA, SARA, KISTI, AIST
      Industry: IBM, Sun, Telcordia, Chiaro, Calient, Glimmerglass, Lucent
Academic Research “OptIPlatform” Cyberinfrastructure:
            A 10Gbps Lightpath Cloud



                                                                      HD/4k Video Cams
                                            HD/4k Telepresence
                              Instruments
          End User                                                              HPC
          OptIPortal

                    10G
                 Lightpaths




                               National LambdaRail


                                            Data
Campus                                      Repositories
Optical                                     & Clusters
Switch

                                                           HD/4k Video Images
Creating a California Cyberinfrastructure of
        OptIPuter “On-Ramps” to NLR, I2DC, & TeraGrid




                            UC Davis

                       UC Berkeley
UC San Francisco
                                     UC Merced
     UC Santa Cruz
                                                                      Creating a Critical Mass of
                                                                       OptIPuter End Users on
                                                                        a Secure LambdaGrid
                                             UC Los Angeles
                     UC Santa Barbara              UC Riverside
                                                 UC Irvine            CENIC Workshop at Calit2
                                                       UC San Diego
                                                                          Sept 15-16, 2008
CENIC’s New “Hybrid Network” - Traditional Routed IP
  and the New Switched Ethernet and Optical Services




 CENIC
Invested
 ~ $14M
    in
Upgrade




             Now
           Campuses
            Need to
            Upgrade

                      Source: Jim Dolgonas, CENIC
The “Golden Spike” UCSD Experimental Optical Core:
     Ready to Couple Users to CENIC L1, L2, L3 Services
                                       Quartzite Communications
  To 10GigE cluster                    Goals by 2008:
                                                  Core Year 3
   node interfaces
                                       >= 60 endpoints at 10 GigE                CENIC L1, L2
                                       >= 30 Packet switched Wavelength
                                               Quartzite         Selective
                                                                                   Services
                                                 Corewavelengths
       .....


                                                                  Switch
                                       >= 30 Switched
                                       >= 400 Connected endpoints
                                                                Lucent                   To 10GigE cluster
                                                                                        node interfaces and
                                                                                             other switches


To cluster nodes
                   .....
                                                                  Glimmerglass
                                          Approximately 0.5 Tbps                           .....
                                                                                                   To cluster nodes


            GigE Switch with
           Dual 10GigE Upliks
                                           Arrive at the “Optical”
                                                             Production
                                                               OOO
                                                               Switch
To cluster nodes
                                         Center of Hybrid Campus
                                               32 10GigE

                   .....
                                                    Switch                          GigE Switch with
                                                                                   Dual 10GigE Upliks
                                                                       Force10
                                                 ...


                                        To             Packet Switch             CalREN-HPR
            GigE Switch with
           Dual 10GigE Upliks           other                                     Research
                                        nodes
                                                                                    Cloud
    GigE
                           Funded by
 10GigE
                            NSF MRI                                              Campus Research
  4 GigE
  4 pair fiber               Grant                                                   Cloud
                                                       Cisco 6509
                                                       Juniper T320

                                                  OptIPuter Border Router
                                 Source: Phil Papadopoulos, SDSC/Calit2
                                   (Quartzite MRI PI, OptIPuter co-PI)
Calit2 Sunlight
            Optical Exchange Contains Quartzite




 Maxine
 Brown,
EVL, UIC
OptIPuter
 Project
Manager
Campus Fiber Network Based on Quartzite Allowed
UCSD CI Design Team to Architect Shared Resources



                   HPC System
   Cluster
   Condo
                     PetaScale
                       Data
                     Analysis                    UCSD Storage
                      Facility
  UC Grid
   Pilot
                     Digital
                   Collections
 DNA Arrays,
                    Lifecycle           Research
 Mass Spec.,
 Microscopes,
                   Management            Cluster         OptiPortal
  Research
   Genome
 Instrument
 Sequencers
                          N x 10Gbe

                Source: Phil Papadopoulos, SDSC/Calit2
Calit2 Microbial Metagenomics Cluster-
Next Generation Optically Linked Science Data Server
                              Source: Phil Papadopoulos, SDSC, Calit2




     512 Processors                            ~200TB
       ~5 Teraflops                              Sun
                                 1GbE           X4500
 ~ 200 Terabytes Storage          and          Storage
                                10GbE
                               Switched         10GbE
                               / Routed
                                 Core
Next Great Planetary Instrument:
The Square Kilometer Array Requires Dedicated Fiber

                             www.skatelescope.org




          Transfers Of
        1 TByte Images
          World-wide
        Will Be Needed
         Every Minute!
My OptIPortalTM – Affordable
    Termination Device for the OptIPuter Global Backplane
•    20 Dual CPU Nodes, 20 24” Monitors, ~$50,000
•    1/4 Teraflop, 5 Terabyte Storage, 45 Mega Pixels--Nice PC!
•    Scalable Adaptive Graphics Environment ( SAGE) Jason Leigh, EVL-UIC




                                  Source: Phil Papadopoulos SDSC, Calit2
Use of OptIPortal to Interactively View
                 Multi-Scale Biomedical Imaging

                                                                 200 Megapixels!




                                                                                    Source:
                                                                                     Mark
                                                                                   Ellisman,
                                                                                     David
Green: Purkinje Cells                                                                 Lee,
Red: Glial Cells                                                                     Jason
Light Blue: Nuclear DNA                                                              Leigh
                Two-Photon Laser Confocal Microscope Montage of
             40x36=1440 Images in 3 Channels of a Mid-Sagittal Section
                 of Rat Cerebellum Acquired Over an 8-hour Period
Scalable Displays Allow Both
Global Content and Fine Detail




                                  Source:
                                   Mark
                                 Ellisman,
                                   David
                                    Lee,
                                   Jason
                                   Leigh
Allows for Interactive Zooming
from Cerebellum to Individual Neurons




                                         Source:
                                          Mark
                                        Ellisman,
                                          David
                                           Lee,
                                          Jason
                                          Leigh
On-Line Resources
        Help You Build Your Own OptIPortal

                 www.optiputer.net
         http://wiki.optiputer.net/optiportal




www.evl.uic.edu/cavern/sage




   http://vis.ucsd.edu/~cglx/
Launch of the 100 Megapixel OzIPortal Kicked Off
      a Rapid Build Out of Australian OptIPortals
  January 15, 2008                               Smarr OptIPortal Road Show




January 15, 2008
      No Calit2 Person Physically Flew to Australia to Bring This Up!
                         Covise, Phil Weber, Jurgen Schulze, Calit2
                               CGLX, Kai-Uwe Doerr , Calit2
                   http://www.calit2.net/newsroom/release.php?id=1421
Building a Data and Visualization Intensive
         Working Environment Across Remote Sites
                                           NASA Ames Visit Feb. 29, 2008




                                                       HiPerVerse:
                                                    First ½ Gigapixel
                                                       Distributed
                                                       OptIPortal-
                                                        124 Tiles
                                                     Sept. 15, 2008

                                    Calit2@ UCI wall




Calit2@ UCSD wall

            UCSD cluster: 15 x Quad core Dell XPS with Dual nVIDIA 5600s
            UCI cluster: 25 x Dual Core Apple G5
OptIPuter Persistent Infrastructure Enables
        Calit2 and U Washington CAMERA Collaboratory
Photo Credit: Alan Decker                             Feb. 29, 2008

                                          Ginger
                                        Armbrust’s
                                         Diatoms:
                                       Micrographs,
                                      Chromosomes,
                                         Genetic
                                        Assembly

    iHDTV: 1500 Mbits/sec Calit2 to
    UW Research Channel Over NLR
Telepresence Meeting
               Using Digital Cinema 4k Streams
                  4k = 4000x2000 Pixels = 4xHD    Streaming 4k
        100 Times                                  with JPEG
     the Resolution                                   2000
       of YouTube!                                Compression
                                                   ½ Gbit/sec
                                                                   Lays
                                                                 Technical
                                                                 Basis for
                                                                  Global
                                                 Keio University  Digital
                                                 President Anzai Cinema

                                                                   Sony
                                                    UCSD           NTT
                                                 Chancellor Fox     SGI




Calit2@UCSD Auditorium
Cisco CWave for CineGrid: A New Cyberinfrastructure
       for High Resolution Media Streaming*
                                                          Source: John (JJ) Jamison, Cisco
 PacificWave
 1000 Denny Way
 (Westin Bldg.)
 Seattle
                                                            StarLight
                                                            Northwestern Univ
 Level3                                                     Chicago
 1360 Kifer Rd.                                                                  McLean
 Sunnyvale                        2007


       Equinix
       818 W. 7th St.
       Los Angeles        CENIC Wave
                                         Cisco Has Built 10 GigE Waves on CENIC, PW,
                                          & NLR and Installed Large 6506 Switches for
              Calit2                       Access Points in San Diego, Los Angeles,
              San Diego                     Sunnyvale, Seattle, Chicago and McLean
          CWave core PoP                            for CineGrid Members
                                          Some of These Points are also GLIF GOLEs
          10GE waves on NLR and CENIC (LA to SD)



             *                                            May 2007
Rendering Supercomputer Data
   at 4k Digital Cinema Resolution




Source: Donna Cox, Robert Patterson, Bob Wilhelmson, NCSA
Providing End-to-End CI for Petascale End Users

                                           Mike Norman, SDSC
                                            October 10, 2008
  Two 64K
   Images
   From a
               log of gas temperature   log of gas density
Cosmological
 Simulation
  of Galaxy
   Cluster
 Formation
Open Cloud OptIPuter Testbed--Manage and Compute
         Large Datasets Over 10Gbps Lambdas




             CENIC           NLR C-Wave             Dragon


                                                    Open Source SW
HW Phase 1 (2008)                                    Hadoop
• 4 racks                                            Sector/Sphere
                                   MREN
   – 120 Nodes
                                                     Thrift, GPB
   – 480 Cores
                                                     Eucalyptus
• 10+ Gb/s WAN
                                                     Benchmarks
Phase 2 (2009) will add additional racks
to current sites and increase number of sites
                                                               24
                     Source: Robert Grossman, UIC
Terasort on Open Cloud Testbed


Sorting 10 Billion Records (1.2 TB) at 4 Sites (120 Nodes)
     Sustaining >5 Gbps--Only 5% Distance Penalty
OpenCloud Testbed Wins
  Against All Comers!
 Supercomputing 2008
Just in Time OptIPlanet Collaboratory:
Live Session Between NASA Ames and Calit2@UCSD
                                Feb 19, 2009          From Start to
                                                      This Image in
                                                   Less Than 2 Weeks!


                                                 View from NASA Ames
                                                 Lunar Science Institute
                                                   Mountain View, CA

                                                    Virtual Handshake

                                                   HD compressed 6:1

                                                      NASA Interest
                                                      in Supporting
                                                     Virtual Institutes




          Source: Falko Kuester, Calit2; Michael Sims, NASA
EVL’s SAGE OptIPortal VisualCasting
              Multi-Site OptIPuter Collaboratory
                                   CENIC CalREN-XD Workshop Sept. 15, 2008
            Total Aggregate VisualCasting Bandwidth for Nov. 18, 2008
EVL-UI Chicago           Sustained 10,000-20,000 Mbps!
               At Supercomputing 2008 Austin, Texas
                         November, 2008                            Streaming 4k

                  SC08 Bandwidth Challenge Entry

                                                     Remote:
               On site:
                                               U of Michigan
        SARA (Amsterdam)                          UIC/EVL
U Michigan
        GIST / KISTI (Korea)                 U of Queensland
        Osaka Univ. (Japan)             Russian Academy of Science
                                            Masaryk Univ. (CZ)
              Requires 10 Gbps Lightpath to Each Site



              Source: Jason Leigh, Luc Renambot, EVL, UI Chicago

The OptIPuter and Its Applications

  • 1.
    The OptIPuter andIts Applications Invited Talk IEEE/LEOS Summer 2009 Topicals Meeting on Future Global Networks July 27, 2009 Dr. Larry Smarr Director, California Institute for Telecommunications and Information Technology Harry E. Gruber Professor, Dept. of Computer Science and Engineering Jacobs School of Engineering, UCSD
  • 2.
    Abstract The NSF-funded OptIPuter project enables user-controlled 10Gbps dedicated lightpaths to provide direct access to global data repositories, scientific instruments, and computational resources from “OptIPortals,” PC clusters which provide scalable visualization in user's campus laboratories. I will describe applications from several disciplines of this global "OptIPlatform".
  • 3.
    The OptIPuter Createsan OptIPlanet Collaboratory: Enabling Data-Intensive e-Research www.evl.uic.edu/cavern/sage “OptIPlanet: The OptIPuter Global Collaboratory” – Special Section of Future Generations Computer Systems, Volume 25, Issue 2, February 2009 Calit2 (UCSD, UCI), SDSC, and UIC Leads—Larry Smarr PI Univ. Partners: NCSA, USC, SDSU, NW, TA&M, UvA, SARA, KISTI, AIST Industry: IBM, Sun, Telcordia, Chiaro, Calient, Glimmerglass, Lucent
  • 4.
    Academic Research “OptIPlatform”Cyberinfrastructure: A 10Gbps Lightpath Cloud HD/4k Video Cams HD/4k Telepresence Instruments End User HPC OptIPortal 10G Lightpaths National LambdaRail Data Campus Repositories Optical & Clusters Switch HD/4k Video Images
  • 5.
    Creating a CaliforniaCyberinfrastructure of OptIPuter “On-Ramps” to NLR, I2DC, & TeraGrid UC Davis UC Berkeley UC San Francisco UC Merced UC Santa Cruz Creating a Critical Mass of OptIPuter End Users on a Secure LambdaGrid UC Los Angeles UC Santa Barbara UC Riverside UC Irvine CENIC Workshop at Calit2 UC San Diego Sept 15-16, 2008
  • 6.
    CENIC’s New “HybridNetwork” - Traditional Routed IP and the New Switched Ethernet and Optical Services CENIC Invested ~ $14M in Upgrade Now Campuses Need to Upgrade Source: Jim Dolgonas, CENIC
  • 7.
    The “Golden Spike”UCSD Experimental Optical Core: Ready to Couple Users to CENIC L1, L2, L3 Services Quartzite Communications To 10GigE cluster Goals by 2008: Core Year 3 node interfaces >= 60 endpoints at 10 GigE CENIC L1, L2 >= 30 Packet switched Wavelength Quartzite Selective Services Corewavelengths ..... Switch >= 30 Switched >= 400 Connected endpoints Lucent To 10GigE cluster node interfaces and other switches To cluster nodes ..... Glimmerglass Approximately 0.5 Tbps ..... To cluster nodes GigE Switch with Dual 10GigE Upliks Arrive at the “Optical” Production OOO Switch To cluster nodes Center of Hybrid Campus 32 10GigE ..... Switch GigE Switch with Dual 10GigE Upliks Force10 ... To Packet Switch CalREN-HPR GigE Switch with Dual 10GigE Upliks other Research nodes Cloud GigE Funded by 10GigE NSF MRI Campus Research 4 GigE 4 pair fiber Grant Cloud Cisco 6509 Juniper T320 OptIPuter Border Router Source: Phil Papadopoulos, SDSC/Calit2 (Quartzite MRI PI, OptIPuter co-PI)
  • 8.
    Calit2 Sunlight Optical Exchange Contains Quartzite Maxine Brown, EVL, UIC OptIPuter Project Manager
  • 9.
    Campus Fiber NetworkBased on Quartzite Allowed UCSD CI Design Team to Architect Shared Resources HPC System Cluster Condo PetaScale Data Analysis UCSD Storage Facility UC Grid Pilot Digital Collections DNA Arrays, Lifecycle Research Mass Spec., Microscopes, Management Cluster OptiPortal Research Genome Instrument Sequencers N x 10Gbe Source: Phil Papadopoulos, SDSC/Calit2
  • 10.
    Calit2 Microbial MetagenomicsCluster- Next Generation Optically Linked Science Data Server Source: Phil Papadopoulos, SDSC, Calit2 512 Processors ~200TB ~5 Teraflops Sun 1GbE X4500 ~ 200 Terabytes Storage and Storage 10GbE Switched 10GbE / Routed Core
  • 11.
    Next Great PlanetaryInstrument: The Square Kilometer Array Requires Dedicated Fiber www.skatelescope.org Transfers Of 1 TByte Images World-wide Will Be Needed Every Minute!
  • 12.
    My OptIPortalTM –Affordable Termination Device for the OptIPuter Global Backplane • 20 Dual CPU Nodes, 20 24” Monitors, ~$50,000 • 1/4 Teraflop, 5 Terabyte Storage, 45 Mega Pixels--Nice PC! • Scalable Adaptive Graphics Environment ( SAGE) Jason Leigh, EVL-UIC Source: Phil Papadopoulos SDSC, Calit2
  • 13.
    Use of OptIPortalto Interactively View Multi-Scale Biomedical Imaging 200 Megapixels! Source: Mark Ellisman, David Green: Purkinje Cells Lee, Red: Glial Cells Jason Light Blue: Nuclear DNA Leigh Two-Photon Laser Confocal Microscope Montage of 40x36=1440 Images in 3 Channels of a Mid-Sagittal Section of Rat Cerebellum Acquired Over an 8-hour Period
  • 14.
    Scalable Displays AllowBoth Global Content and Fine Detail Source: Mark Ellisman, David Lee, Jason Leigh
  • 15.
    Allows for InteractiveZooming from Cerebellum to Individual Neurons Source: Mark Ellisman, David Lee, Jason Leigh
  • 16.
    On-Line Resources Help You Build Your Own OptIPortal www.optiputer.net http://wiki.optiputer.net/optiportal www.evl.uic.edu/cavern/sage http://vis.ucsd.edu/~cglx/
  • 17.
    Launch of the100 Megapixel OzIPortal Kicked Off a Rapid Build Out of Australian OptIPortals January 15, 2008 Smarr OptIPortal Road Show January 15, 2008 No Calit2 Person Physically Flew to Australia to Bring This Up! Covise, Phil Weber, Jurgen Schulze, Calit2 CGLX, Kai-Uwe Doerr , Calit2 http://www.calit2.net/newsroom/release.php?id=1421
  • 18.
    Building a Dataand Visualization Intensive Working Environment Across Remote Sites NASA Ames Visit Feb. 29, 2008 HiPerVerse: First ½ Gigapixel Distributed OptIPortal- 124 Tiles Sept. 15, 2008 Calit2@ UCI wall Calit2@ UCSD wall UCSD cluster: 15 x Quad core Dell XPS with Dual nVIDIA 5600s UCI cluster: 25 x Dual Core Apple G5
  • 19.
    OptIPuter Persistent InfrastructureEnables Calit2 and U Washington CAMERA Collaboratory Photo Credit: Alan Decker Feb. 29, 2008 Ginger Armbrust’s Diatoms: Micrographs, Chromosomes, Genetic Assembly iHDTV: 1500 Mbits/sec Calit2 to UW Research Channel Over NLR
  • 20.
    Telepresence Meeting Using Digital Cinema 4k Streams 4k = 4000x2000 Pixels = 4xHD Streaming 4k 100 Times with JPEG the Resolution 2000 of YouTube! Compression ½ Gbit/sec Lays Technical Basis for Global Keio University Digital President Anzai Cinema Sony UCSD NTT Chancellor Fox SGI Calit2@UCSD Auditorium
  • 21.
    Cisco CWave forCineGrid: A New Cyberinfrastructure for High Resolution Media Streaming* Source: John (JJ) Jamison, Cisco PacificWave 1000 Denny Way (Westin Bldg.) Seattle StarLight Northwestern Univ Level3 Chicago 1360 Kifer Rd. McLean Sunnyvale 2007 Equinix 818 W. 7th St. Los Angeles CENIC Wave Cisco Has Built 10 GigE Waves on CENIC, PW, & NLR and Installed Large 6506 Switches for Calit2 Access Points in San Diego, Los Angeles, San Diego Sunnyvale, Seattle, Chicago and McLean CWave core PoP for CineGrid Members Some of These Points are also GLIF GOLEs 10GE waves on NLR and CENIC (LA to SD) * May 2007
  • 22.
    Rendering Supercomputer Data at 4k Digital Cinema Resolution Source: Donna Cox, Robert Patterson, Bob Wilhelmson, NCSA
  • 23.
    Providing End-to-End CIfor Petascale End Users Mike Norman, SDSC October 10, 2008 Two 64K Images From a log of gas temperature log of gas density Cosmological Simulation of Galaxy Cluster Formation
  • 24.
    Open Cloud OptIPuterTestbed--Manage and Compute Large Datasets Over 10Gbps Lambdas CENIC NLR C-Wave Dragon Open Source SW HW Phase 1 (2008)  Hadoop • 4 racks  Sector/Sphere MREN – 120 Nodes  Thrift, GPB – 480 Cores  Eucalyptus • 10+ Gb/s WAN  Benchmarks Phase 2 (2009) will add additional racks to current sites and increase number of sites 24 Source: Robert Grossman, UIC
  • 25.
    Terasort on OpenCloud Testbed Sorting 10 Billion Records (1.2 TB) at 4 Sites (120 Nodes) Sustaining >5 Gbps--Only 5% Distance Penalty
  • 26.
    OpenCloud Testbed Wins Against All Comers! Supercomputing 2008
  • 27.
    Just in TimeOptIPlanet Collaboratory: Live Session Between NASA Ames and Calit2@UCSD Feb 19, 2009 From Start to This Image in Less Than 2 Weeks! View from NASA Ames Lunar Science Institute Mountain View, CA Virtual Handshake HD compressed 6:1 NASA Interest in Supporting Virtual Institutes Source: Falko Kuester, Calit2; Michael Sims, NASA
  • 28.
    EVL’s SAGE OptIPortalVisualCasting Multi-Site OptIPuter Collaboratory CENIC CalREN-XD Workshop Sept. 15, 2008 Total Aggregate VisualCasting Bandwidth for Nov. 18, 2008 EVL-UI Chicago Sustained 10,000-20,000 Mbps! At Supercomputing 2008 Austin, Texas November, 2008 Streaming 4k SC08 Bandwidth Challenge Entry Remote: On site: U of Michigan SARA (Amsterdam) UIC/EVL U Michigan GIST / KISTI (Korea) U of Queensland Osaka Univ. (Japan) Russian Academy of Science Masaryk Univ. (CZ) Requires 10 Gbps Lightpath to Each Site Source: Jason Leigh, Luc Renambot, EVL, UI Chicago