Slides from my presentation in Paris on 13 Dec 2016, summarising the findings of our study on text and data mining in public research for the ADBU. Full report available at http://adbu.fr/etude-tdm/.
ContentMining for France and Europe; Lessons from 2 years in UKpetermurrayrust
I have spend 2 years carrying out Content Mining (aka Text and Data Mining) in the UK under the 2014 "Hargreaves" exception. This talk was given in Paris, to ADBU , after France had passed the law of the numeric Republique. I illustrate what worked in what did not and why and offer ideas to France and Europe
Towards Responsible Content Mining: A Cambridge perspectivepetermurrayrust
ContentMining (Text and Data Mining) is now legal in the UK for non-commercial research. Cambridge UK is a natural centre, with several components:
* a world-class University and Library
* many publishers, both Open Access and conventional
* a digital culture
* ContentMine - a leading proponent and practitioner of mining
Cambridge University Press welcomes content mining and invited PMR to give a talk there. He showed the technology and protocols and proposed a practical way forward in 2017
High throughput mining of the scholarly literature; talk at NIHpetermurrayrust
The scientific and medical literature contains huge amounts of valuable unused information. This talk shows how to discover it, extract, re-use and interpret it. Wikidata is presented as a key new tool and infrastructure. Everyone can become involved. However some of the barriers to use are sociopolitical and these are identified and discussed.
ContentMining (aka Text and Data Mining TDM) is beneficial, legal in the UK and a few other countries. Many groups in Europe are looking to make it legal there as well but there are many vested interests who oppose it.
This short presentation shows the benefits of content mining, some of the technology, and the way that it can be used and promotedby communities of practice. I urge all attendees at CopyCamp and also the wider world to press for liberalization of Copyright
The scientific scholarly literature now contains many millions of articles. The contain semi-structured information of high quality and veracity. We show how this resource can be converted to a universal Wikicite format and full-text indexed against Wikidata dictionaries. We now have > 5 million bibliographic records and over 200 dictionaries based in Wikidata properties and queriable by SPARQL.
ContentMining for France and Europe; Lessons from 2 years in UKpetermurrayrust
I have spend 2 years carrying out Content Mining (aka Text and Data Mining) in the UK under the 2014 "Hargreaves" exception. This talk was given in Paris, to ADBU , after France had passed the law of the numeric Republique. I illustrate what worked in what did not and why and offer ideas to France and Europe
Towards Responsible Content Mining: A Cambridge perspectivepetermurrayrust
ContentMining (Text and Data Mining) is now legal in the UK for non-commercial research. Cambridge UK is a natural centre, with several components:
* a world-class University and Library
* many publishers, both Open Access and conventional
* a digital culture
* ContentMine - a leading proponent and practitioner of mining
Cambridge University Press welcomes content mining and invited PMR to give a talk there. He showed the technology and protocols and proposed a practical way forward in 2017
High throughput mining of the scholarly literature; talk at NIHpetermurrayrust
The scientific and medical literature contains huge amounts of valuable unused information. This talk shows how to discover it, extract, re-use and interpret it. Wikidata is presented as a key new tool and infrastructure. Everyone can become involved. However some of the barriers to use are sociopolitical and these are identified and discussed.
ContentMining (aka Text and Data Mining TDM) is beneficial, legal in the UK and a few other countries. Many groups in Europe are looking to make it legal there as well but there are many vested interests who oppose it.
This short presentation shows the benefits of content mining, some of the technology, and the way that it can be used and promotedby communities of practice. I urge all attendees at CopyCamp and also the wider world to press for liberalization of Copyright
The scientific scholarly literature now contains many millions of articles. The contain semi-structured information of high quality and veracity. We show how this resource can be converted to a universal Wikicite format and full-text indexed against Wikidata dictionaries. We now have > 5 million bibliographic records and over 200 dictionaries based in Wikidata properties and queriable by SPARQL.
The mining "Revolution"; are Libraries supporting Researchers or Publishers"?petermurrayrust
increasingly we find that mega-corporations have taken control over scholarship. We could use the scholarly literature as a knowledge resource but megacorps try to stop this - and often libraries support them rather than researchers.
A Global Commons for Scientific Data: Molecules and Wikidatapetermurrayrust
Methods for extracting facts from the scientific literature, and linking them to Wikidata IDs. Wikidata is introduced by an architectural example and bioscience. Then we explore how data can be extracted from text and from images
A presentation by Open Climate Knowledge for European Forum for Advanced Practices. Showing how the scientific literature can be searched for knowledge on this multidisciplinary topic.
Can Computers understand the scientific literature (includes compscie material)TheContentMine
Published on Jan 24, 2014 by PMR
With the semantic web machines can autonomously carry out many knowledge-based tasks as well as humans. The main problems are not technical but the prevention of access to information. I advocate automatic downloading and indexing of all scientific information
Automatic Extraction of Knowledge from the LiteratureTheContentMine
Published on May 11, 2016 by PMR
ContentMine tools (and the Harvest alliance) can be used to search the literature for knowledge, especially in biomedicine. All tools are Open and shortly we shall be indexing the complete daily scholarly literature
Specimen-level mining: bringing knowledge back 'home' to the Natural History ...Ross Mounce
A talk given at the Geological Society of London, UK on 2016/03/09 as part of the Lyell meeting on Palaeoinformatics. http://www.geolsoc.org.uk/lyell16 #lyell16
High throughput mining of the scholarly literature TheContentMine
Published on Jun 7, 2016 by PMR
Talk given to statisticians in Tilburg, with emphasis on scholarly comms for detecting unusual features. Includes demo of Amanuens.is and image mining
The Publisher -Academic complex is a dystopian cycle where academia gives (mega)publishers manuscripts, reviews and money and the publishers give personal and institutional glory(vanity). This is analysed in its origins, impact and harm. The disruption can come from Advocacy/Activism, Community and Tools. Disruption comes from doing things Better or Novel, not Prices
AUDIO : https://soundcloud.com/damahub/peter-murray-rust-disturbing-the-publisher-academic-complex-210418-british-library
Thanks to DaMaHub
This has now been edited by Ewan McAndrew (Edinburgh Wikimedian in Residence) many thanks - to synchronize the slides with the soundtrack. https://media.ed.ac.uk/media/1_46h85ltt Brilliant
Liberating facts from the scientific literature - Jisc Digifest 2016 TheContentMine
Published on Mar 4, 2016 by PMR
Text and data mining (TDM) techniques can be applied to a wide range of materials, from published research papers, books and theses, to cultural heritage materials, digitised collections, administrative and management reports and documentation, etc. Use cases include academic research, resource discovery and business intelligence.
This workshop will show the value and benefits of TDM techniques and demonstrate how ContentMine aims to liberate 100,000,000 facts from the scientific literature, and ContentMine will provide a hands on demo on a topical and accessible scientific/medical subject.
Our FutureTDM workshop at the European Parliament focus at the development of TDM policy. With EU copyright reform now in progress, we bring together policy makers and stakeholder groups so that we can share FutureTDM’s findings and our first expert driven policy recommendations that can help increase EU TDM.
The mining "Revolution"; are Libraries supporting Researchers or Publishers"?petermurrayrust
increasingly we find that mega-corporations have taken control over scholarship. We could use the scholarly literature as a knowledge resource but megacorps try to stop this - and often libraries support them rather than researchers.
A Global Commons for Scientific Data: Molecules and Wikidatapetermurrayrust
Methods for extracting facts from the scientific literature, and linking them to Wikidata IDs. Wikidata is introduced by an architectural example and bioscience. Then we explore how data can be extracted from text and from images
A presentation by Open Climate Knowledge for European Forum for Advanced Practices. Showing how the scientific literature can be searched for knowledge on this multidisciplinary topic.
Can Computers understand the scientific literature (includes compscie material)TheContentMine
Published on Jan 24, 2014 by PMR
With the semantic web machines can autonomously carry out many knowledge-based tasks as well as humans. The main problems are not technical but the prevention of access to information. I advocate automatic downloading and indexing of all scientific information
Automatic Extraction of Knowledge from the LiteratureTheContentMine
Published on May 11, 2016 by PMR
ContentMine tools (and the Harvest alliance) can be used to search the literature for knowledge, especially in biomedicine. All tools are Open and shortly we shall be indexing the complete daily scholarly literature
Specimen-level mining: bringing knowledge back 'home' to the Natural History ...Ross Mounce
A talk given at the Geological Society of London, UK on 2016/03/09 as part of the Lyell meeting on Palaeoinformatics. http://www.geolsoc.org.uk/lyell16 #lyell16
High throughput mining of the scholarly literature TheContentMine
Published on Jun 7, 2016 by PMR
Talk given to statisticians in Tilburg, with emphasis on scholarly comms for detecting unusual features. Includes demo of Amanuens.is and image mining
The Publisher -Academic complex is a dystopian cycle where academia gives (mega)publishers manuscripts, reviews and money and the publishers give personal and institutional glory(vanity). This is analysed in its origins, impact and harm. The disruption can come from Advocacy/Activism, Community and Tools. Disruption comes from doing things Better or Novel, not Prices
AUDIO : https://soundcloud.com/damahub/peter-murray-rust-disturbing-the-publisher-academic-complex-210418-british-library
Thanks to DaMaHub
This has now been edited by Ewan McAndrew (Edinburgh Wikimedian in Residence) many thanks - to synchronize the slides with the soundtrack. https://media.ed.ac.uk/media/1_46h85ltt Brilliant
Liberating facts from the scientific literature - Jisc Digifest 2016 TheContentMine
Published on Mar 4, 2016 by PMR
Text and data mining (TDM) techniques can be applied to a wide range of materials, from published research papers, books and theses, to cultural heritage materials, digitised collections, administrative and management reports and documentation, etc. Use cases include academic research, resource discovery and business intelligence.
This workshop will show the value and benefits of TDM techniques and demonstrate how ContentMine aims to liberate 100,000,000 facts from the scientific literature, and ContentMine will provide a hands on demo on a topical and accessible scientific/medical subject.
Our FutureTDM workshop at the European Parliament focus at the development of TDM policy. With EU copyright reform now in progress, we bring together policy makers and stakeholder groups so that we can share FutureTDM’s findings and our first expert driven policy recommendations that can help increase EU TDM.
A research-friendly copyright environment in the digital age: a European pers...Jean-François Dechamp
A 30-minute presentation that builds the case for a copyright exception for scientific research in the European legislation, in order to allow data analytics (Text and Data Mining / TDM)
Horizon 2020 - Oportunidades entre UE y LAC. Octubre 2017Elan Network
Taller: Formación Programa Horizonte 2020.
Objetivos:
• Explicar los alcances y oportunidades de desarrollo de proyectos
conjuntos.
• Presentar las mejores prácticas para la participación en el Programa
Horizonte 2020
• Casos de éxito
Tensions between intellectual property and knowledge discovery in the digital...LIBER Europe
Presentation on text and data mining, its uses, and issues to be addressed to increase its uptake: copyright, open access. Introduces a new European open research infrastructure, OpenMinTed, which will enable TDM and tha capturing of TMD outputs. Ex Libris session, #WLIC15 Cape Town, 18 August 2015.
Crowdsourcing on what are the new sources of ict enabled growth and jobs to t...polenumerique33
Ce Rapport d'Étude Final représente l'aboutissement du projet qu'InnoCentive a livré sous contrat de la Direction Générale des Réseaux de Communication, Contenu et
Technologie (DG CONNECT) de la Commission Européenne. En explorant comment des exemples d'innovations ouvertes peuvent être utilisés pour orienter des politiques publiques vers les technologies de l'information et de la communication (TIC), deux
Défis d'innovations furent exécutés dans le cadre de ce projet. Un atelier de leaders d'opinion fut ensuite organisé pour discuter des résultats et des implications des défis, et
pour explorer la façon dont l'innovation ouverte peut être utilisée plus largement dans les politiques publiques et la possibilité d'un changement d'échelle. En tant qu'outil
émergeant gagnant de plus en plus en popularité, le crowdsourcing de politiques publiques peut être considéré comme un moyen essentiel pour démocratiser davantage
encore l'élaboration des politiques, tout en accédant à une expertise externe qui, autrement, pourrait ne pas avoir été connue de l'organisation. Ce rapport détaille tout
d'abord les idées recueillies dans le cadre des Défis de l'innovation ouverte, en soulignant celles qui ont étés retenues par les juges ou ayant reçu un prix. Les chapitres
suivants tirent partis de ces idées soumises afin de présenter des recommandations de politiques implémentables ayant été discutées par les participants de l'atelier et de recommandations plus générales pour la potentielle utilisation future de l'innovation ouverte et du crowdsourcing par la Commission Européenne.
Similar to Text and data mining in UK and France (ADBU - 13 Dec 16) (20)
Research for development - ARMA conference June 2019Rob Johnson
ARMA workshop designed to equip delegates with practical hints and tips to identify and assess potential research partners in low and middle income countries (LMICs). Presented by Rob Johnson (Research Consulting) and Therina Theron (Stellenbosch University & South African Research and Innovation Management Association)
Rob Johnson of Research Consulting casts his expert eye over the implications of Plan S for those in academia and independent publishing, and explores what they might do to respond
Embracing Complexity - The new normal in scholarly communicationRob Johnson
Slides from presentation by Rob Johnson at the SSP Pre-Conference Seminar on 7 April 2018: We’re Not Who We Used to Be’: Shifting Relationship Dynamics and Imbalances in an Open Access World.
OA market presentation for open aire 20 april (final)Rob Johnson
Slides from presentation by Rob Johnson and Mattia Fosci on the development of a sustainable and competitive open access market. Originally presented at the OpenAIRE post-grant OA pilot closing workshop, 20 April in The Hague, Netherlands.
The original report can be found here: https://zenodo.org/record/401029#.WPnKP4h95eU
This pdf is about the Schizophrenia.
For more details visit on YouTube; @SELF-EXPLANATORY;
https://www.youtube.com/channel/UCAiarMZDNhe1A3Rnpr_WkzA/videos
Thanks...!
Earliest Galaxies in the JADES Origins Field: Luminosity Function and Cosmic ...Sérgio Sacani
We characterize the earliest galaxy population in the JADES Origins Field (JOF), the deepest
imaging field observed with JWST. We make use of the ancillary Hubble optical images (5 filters
spanning 0.4−0.9µm) and novel JWST images with 14 filters spanning 0.8−5µm, including 7 mediumband filters, and reaching total exposure times of up to 46 hours per filter. We combine all our data
at > 2.3µm to construct an ultradeep image, reaching as deep as ≈ 31.4 AB mag in the stack and
30.3-31.0 AB mag (5σ, r = 0.1” circular aperture) in individual filters. We measure photometric
redshifts and use robust selection criteria to identify a sample of eight galaxy candidates at redshifts
z = 11.5 − 15. These objects show compact half-light radii of R1/2 ∼ 50 − 200pc, stellar masses of
M⋆ ∼ 107−108M⊙, and star-formation rates of SFR ∼ 0.1−1 M⊙ yr−1
. Our search finds no candidates
at 15 < z < 20, placing upper limits at these redshifts. We develop a forward modeling approach to
infer the properties of the evolving luminosity function without binning in redshift or luminosity that
marginalizes over the photometric redshift uncertainty of our candidate galaxies and incorporates the
impact of non-detections. We find a z = 12 luminosity function in good agreement with prior results,
and that the luminosity function normalization and UV luminosity density decline by a factor of ∼ 2.5
from z = 12 to z = 14. We discuss the possible implications of our results in the context of theoretical
models for evolution of the dark matter halo mass function.
Richard's entangled aventures in wonderlandRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
Multi-source connectivity as the driver of solar wind variability in the heli...Sérgio Sacani
The ambient solar wind that flls the heliosphere originates from multiple
sources in the solar corona and is highly structured. It is often described
as high-speed, relatively homogeneous, plasma streams from coronal
holes and slow-speed, highly variable, streams whose source regions are
under debate. A key goal of ESA/NASA’s Solar Orbiter mission is to identify
solar wind sources and understand what drives the complexity seen in the
heliosphere. By combining magnetic feld modelling and spectroscopic
techniques with high-resolution observations and measurements, we show
that the solar wind variability detected in situ by Solar Orbiter in March
2022 is driven by spatio-temporal changes in the magnetic connectivity to
multiple sources in the solar atmosphere. The magnetic feld footpoints
connected to the spacecraft moved from the boundaries of a coronal hole
to one active region (12961) and then across to another region (12957). This
is refected in the in situ measurements, which show the transition from fast
to highly Alfvénic then to slow solar wind that is disrupted by the arrival of
a coronal mass ejection. Our results describe solar wind variability at 0.5 au
but are applicable to near-Earth observatories.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
In this webinar we give an overview of advanced applications of the IVM system in preclinical research. IVIM technology is a provider of all-in-one intravital microscopy systems and solutions optimized for in vivo imaging of live animal models at sub-micron resolution. The system’s unique features and user-friendly software enables researchers to probe fast dynamic biological processes such as immune cell tracking, cell-cell interaction as well as vascularization and tumor metastasis with exceptional detail. This webinar will also give an overview of IVM being utilized in drug development, offering a view into the intricate interaction between drugs/nanoparticles and tissues in vivo and allows for the evaluation of therapeutic intervention in a variety of tissues and organs. This interdisciplinary collaboration continues to drive the advancements of novel therapeutic strategies.
This presentation explores a brief idea about the structural and functional attributes of nucleotides, the structure and function of genetic materials along with the impact of UV rays and pH upon them.
3. Study aims
Assess economic impact of TDM
on public research in France via:
• Case studies (France, UK, Europe)
• Analysis of the relevance of a
copyright exception for TDM
3
http://adbu.fr/etude-tdm/
4. 6-fold return
€6 contribution to EU economy for each €1 directly
generated by research universities (source: Biggar
Economics)
20% per annum
Estimated rate of return to public investment in
science and innovation (source: Frontier Economics)
€16 billion
Value of R&D performed within French universities
and public research bodies (source: Eurostat)
4
5. 2.4 million
Scientific articles per annum
Zero
Number of researchers who can keep up
2.5 quintillion
bytes
Data produced each day
5
6. Any automated analytical technique
aiming to analyse text and data in
digital form in order to generate
information such as patterns, trends
and correlations.
European Commission. Proposal for a Directive of the European Parliament
and of the Council on copyright in the Digital Single Market
6
What is TDM?
8. …countries, in which academic researchers must
acquire the express consent of rights holders to
conduct lawful datamining, exhibit a
significantly lower share of data mining
research output relative to total research
output
Handke, Guilbault and Vallbe IS EUROPE FALLING BEHIND IN DATA MINING? (2015)
8
What is the problem?
9. The European ecosystem for engaging
in text and data mining remains
highly problematic… The end result:
Europe is being leapfrogged by rising
interest in other regions, notably
Asia.
Filippov, S. & Hofheinz, P. Text and Data Mining for Research and Innovation
(2016)
9
What is the result?
10. Legislative options
10
2014 2017?
Industry
self-
regulation
Mandatory exceptions to copyright
Non-commercial
research only
Commercial
research,
beneficiaries
restricted
1 2 3 4
Commercial
research purpose,
beneficiaries
unrestricted
Loi pour une République Numérique (Loi LEMAIRE)
28 September 2016
1.5?
11. Restriction France
No lawful access
Not scientific
literature
-
Not public research
Commercial
purpose
Conservation not by
designated body
Using a TDM exception
11
13. Copyright exception
(Base Camp)
Camp 1:
Legal clarity
EC Directive
Camp 2: Access
to content
Camp 3: Technical
infrastructure
Camp 4: Skills
and support
Summit: Researchers
embrace TDM
14. The exception has made
a massive difference...
Petr Knoth, Open University, UK
14
15. …the definition of commercial
and non-commercial research
is creating uncertainty
Petr Knoth, Open University, UK
15
16. EC Proposed
Directive
• Consistent with the existing EU
copyright legal framework
• Could help resolve uncertainty over
commercial partnerships
• Currently out for consultation
Source: http://www.comodinicachia.com/timeline.html
17. What needs to happen?
• Communicate legal provisions for TDM with
certainty and clarity
• Clarify the exception’s scope where public
researchers collaborate with commercial partners
• Monitor the interaction of the copyright exception
with digital rights management (DRM), licensing and
other relevant legal regimes
17
20. I scaled down my TDM research,
and had to exclude two
publishers… I couldn’t do what I
set out to do
Chris Hartgerink, Tilburg University, Netherlands
20
21. I had to ask too many publishers for the
right to download … it takes a lot of time
and … the publishers’ servers frequently
block us.
Mathieu Andro, INRA, France
21
22. What is the problem
with access?
• Technical protection measures (TPMs)
• Crawler traps
• Restricted access to application programming
interfaces (APIs)
22
23. • Incorporate TDM clauses into model licence
agreements
• Educate researchers on their rights
• Maintain dialogue with publishers
• Improve access through better infrastructure…
23
What needs to happen?
25. …Every time you have a new project or
data source… you hit issues about how
the documents are structured, oddities
of formatting, and so on.
Mark Greenwood, GATE, UK
25
27. • Invest in TDM infrastructure
• Make TDM accessible to non-specialists
• Streamline access
• Open standards and harmonised data formats
27
What needs to happen?
29. …We have algorithms to
answer questions, but we do
not have algorithms to ask
questions
François Rioult, GREYC Laboratory, Université de
Caen, France
• François Rioult
29
31. The library needs to be able to say: ‘If
you’ve got a question about TDM,
come to us’
Danny Kingsley, Head of Scholarly Communications,
University of Cambridge, UK
31
32. Library support for TDM
• Advocacy
• Copyright advice
• Access to legal expertise
• Skills development and training
• Advice on data sources and tools
32
36. There are so many obstructions in the
way of doing this research, and doing it
well. It is just too hard and so people do
other things
Ross Mounce, University of Cambridge, UK
36
37. • Endorsement by senior research leaders
• Funding and incentives linked to TDM
• Alignment with moves to open science
37
What needs to happen?
43. 43
Libraries
•Monitor researchers’ experience
•Develop case studies and guidance
•Involve the national library
•Invest in TDM support
•Incorporate TDM clauses into licence
agreements
researchers’ experiences
Making TDM a reality
44. 44
Legislators
• Provide certainty
• Enable public/private partnerships
• Monitor interaction with other
legislation (e.g. DRM)
Institutions/research leaders
• Endorse TDM
• Invest in library services
• Explore knowledge exchange
opportunities
Research funders
• Invest in infrastructure
• Forum to improve access
• Link TDM to Open Science
Publishers & providers
• Cloud services for TDM
• Steamline access
• Open, harmonised standards
Making TDM a reality
45. Rob Johnson
Template inspired by SlidesCarnival
Thank you
rob.johnson@research-consulting.com
www.research-consulting.com
45
http://adbu.fr/etude-tdm/
Full report available at::
Editor's Notes
France - €6.4billion R&D in government sector, €10 billion in HE
UK - €3billion in government, €9 billion
A number of studies indicate that TDM can increase the efficiency of research
Increase coverage of literature reviews
Cut down manual work
Automate information retrieval
Accelerate drug discovery
Note - Conservation requirements could be a positive in terms of reproducibility
A many-to-many problem
Edmund Hillary and Tenzing Norgay
Advocacy for the benefits of TDM at all levels of the organisation
Copyright advice on using the TDM exception
Access to legal expertise
Skills development (indexing and metadata curation) and access to technical training (coding and high performance computing)
Advice on data sources and tools