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TL III Program Improvement Plan-
Chickpea in India
Sushil K Chaturvedi and B.B. Singh
Chickpea in India
Source: http://pib.nic.in/newsite/pmreleases.aspx?mincode=27
* Third estimates (chickpea share is 43.84%) released on 9th May 2016
0
2
4
6
8
10
12
0
200
400
600
800
1000
1200
Yield (kg/ha) Area (m ha) (Production (M t)
*Pulses: 17.06 m t, *Chickpea: 7.48 m t
Chickpea in contrasting agro-climatic zones
Zone Trait Stress Yield limiting constraints
North Excessive
biomass
Temperature
extremities
130-170 days crop duration,
fog & frost, temperature
extremities, flower drop, poor
sunlight
South Less
biomass
Terminal drought 85-100 days crop duration,,
harsh post-anthesis period
Central Less
biomass
Terminal drought
& heat
110-125 days crop duration,
harsh post-anthesis period,
frost, drought and heat stress
Productivity Constraints
• Climate change- vulnerability of varieties to fluctuating
temperatures, intermittent drought and heavy downpours
• Narrow genetic base - vulnerability to stresses
• Declining TFP in irrigated areas dominated by cereal-cereal cropping
system Emerging diseases, insect pests and weeds posing serious
threat (minor ones are becoming major)
• Regional shifts cooler to warmer regions
• Emerging pests
• Problematic soils, and high/low soil moisture at seeding
IIPR, Kanpur
Head Quarter
Achievements
>71 varieties in seed chain
• Diseases resistant : Fusarium wilt and Ascochyta blight
• Drought tolerant: Rainfed conditions
• Heat tolerant : Delayed sowing
• Salinity tolerance
• Lodging tolerance
Farmers’ preferred traits
Extra-large seeded kabuli
• MNK 1, Phule G 0517 , PKV 4-1
Large seeds kabuli
• IPCK 2002-29, ICK 2004-29, KAK 2
Short duration
• JG 14, JSC 55, JSC 56, IPC 2006-77
Mechanical harvesting
• NBeG 47
• GBM 2
Green seeds
• RSG 992, sadabahar
Research Priorities
• Germplasm enhancement- Prebreeding
• Resistance breeding- Multiple adversities resistance
• Varieties with farmers’ preferred traits- seed size & intercropping
• Improving nutrient use efficiency- ‘P’ acquisition efficiency
• Reducing cost of cultivation- Machine harvestable varieties &
- Herbicide tolerance
• Trait identification- Immature green chickpea grain, nutrients rich
grains, milling quality, etc.
• Ensuring genetic purity : Variety specific diagnostic markers
Genetic Resources Maintained at IIPR
Crop Germplasm Acc. Wild Wild sps. Landraces
Chickpea 4730 123 6 188
>18000 acc. maintained in different gene banks
Value addition to PGR
• PGR conservation: NBPGR, ICRISAT, ICARDA
• Identification of donors – NARS, ICRISAT, ICARDA
• Utilization by NARS
Precise phenotyping of genetic
resources (core or mini-core
sets) including wild relatives &
primitive landraces to indentify
donors
PGR- reservoir of useful genes
 198 land races and 120 accessions of 6 wild Cicer
species were characterized .
 3003 germplasm accessions maintained for further
utilization.
Pre-breeding efforts using primitive landraces
& wild Cicer species
Screening against
•Abiotic stresses (heat, cold & soil moisture stress)
•Biotic stresses (diseases: BGM , AB)
Reservoir of useful genes-
can help in alleviating tolerance
against abiotic stresses
Pre-breeding for broadening genetic base
Interspecific crosses made using
• ILWC 179 & ILWC 245 (C. echinospermum)
• ILWC 212, EC 556270, ILWC 237 (C. reticulatum)
Several crosses using landraces were made :
• ILC 3512,
• ILC 3518
• ILC 3279 Variability released for
• Seed per pod: 2-3 seeds
• Profuse primary branches: 8-10
• Profuse secondary branches: 17-23
• Plant height >90 cm.
• Lodging tolerance
• Heat tolerance
ILC 115: Heat tolerant >350C temperature)
• 71 acc. of wild Cicer sps screened against heat stress
• ILC 115, EC 556270 and ILWC 21 : Heat tolerant
• Pollen germination & pollen tube growth observed at
>350C temperature
• Similar genotypic variations observed for membrane stability
Phenotyping against heat stress
Genotype
Yield (kg/ha)
100 seed
wt. (g)
Pant G 186 1611 16.3
BG 372 1488 15.5
KPG 59 1429 17.8
IPC 2010-62 1719 25.7
IPC 2006-77 1817 16.3
Improving Heat Tolerance
(over 3 years; 7/11 locations)
Phenotyping for Herbicide Tolerance
Tolerant: ICC 1161, ICC 1205, ICC 13816, IPC 2008-29, IPC 2006-
134, ICC 1710, ICC 2629, GL1006 , ICCV 08102, IPC 2010-56 & IPC
2010-173
ICC 5484: most sensitive and showed leaf
burning within 7 days of herbicide
application
Two mapping populations are being developed
Transcriptome analysis performed- communicated
Restructuring traditional plant types
• Resource conservation
• High population density
• Mechanical harvesting
Plant type (tall : >60 cm. , Growth: Erect/semi-erect), Profuse
primary branches of equal height, medium large leaflets, podding
above 20-25 cm from the base, and >550 angle for branches
Reduction in plant biomass due to low P availability in soil varied
from less than 10 to 80% among the genotypes.
Better P use efficiency was observed in BG 256, IPC 2010-167 and
lowest in IPC 2005-44 followed by JG 16.
This indicates presence of genetic variations for P use efficiency.
0.0
50.0
100.0
150.0
200.0
250.0
300.0
350.0
400.0
IPC2005-44 JG-16 IPC 2010-152 BG 256 IIPC 2010-
167
172.71
241.55
284.09
364.96
384.62
P-useefficiency(gshoot/
gPuptake)
Chickpea Varieties
Phosphorus Acquisition Efficiency
Emerging Diseases
Rust (Uromyces ciceris-arietini),
is emerging as one the
important disease under late
sown conditions of Terai,
Eastern and Southern India.
Alternaria Blight (Alternaria
alternata), Dry root rot and
Stunt (Bean leafroll leuteo
virus, chickpea chlorotic dwarf
geminivirus) are emerging
diseases in eastern India
Ensuring maximum returns: Tailoring
crop plants for intercropping systems
Plant types ensuring better solar light
interception on both the crops need to
be ensured while developing suitable
varieties of chickpea.
Immature Green Chickpea Grain (IGCG)-
for vegetable purpose as 'Health Food'
•Extra-early maturing and cold tolerant varieties
•Retention of green colour of immature grains: till physiological
maturity
Punjab, Haryana, Rajasthan, western Uttar Pradesh, Jharkhand,
Chhota Nagpur plateau (South Bihar, Southern West Bengal, Odisha
etc.
Research strategies
• Germplasm enhancement- Prebreeding & value addition to PGR
• Integrated Breeding – deployment of molecular markers to enhance
efficiency of selection
• Accelerated Breeding – Utilizing rapid generation advancement, and
• Transgenic technology- utilizing genes from diverse sources
Rapid Generation advancement
IIPR Off-Season Nursery, UAS Campus, Dharwad
2-3 generations can be ensured, if facilities are utilized properly
June/July to October/November
Transforming using cry1Ac : DCP 92-3
A B C D
E F G H I
[A: Germinated seedlings; B: Removal of radical and plumule; C: Axillary meristem
explants, D: Initiation of multiple shoots; E: Multiplication and elongation of shoots;
F: Separated green healthy shoots; G: Graft onto non-transgenic root stock; H:
hardening of grafted plants; I: mature fertile plants]
Genomics Enabled pulses Improvement
• Development of molecular markers
• Mapping of gene(s)/QTLs conferring resistance
• Identification of linked markers to targeted traits
• Deployment of molecular markers in breeding
Deploy molecular markers- for traits where selection
during segregating generations is difficult ??????
BC3F4 and BC3F3 generation of the cross Pusa 256 x
Vijay screened against foc race 2 in sick plots, 4 progenies were
found highly resistant and one resistant, seed is being multiplied.
•Introgression of race specific resistance to FW (Foc 2) in
variety Pusa 256
Deployment of molecular markers for developing
wilt resistant varieties- for learning
MABC Lines
for drought
testing
MABC for drought tolerance
9/7/2016 27
F1
(Off season 2012)
Back cross
DCP92-3 ICC4958x
F1
BC2F1
KWR108 (P1) ICC 4958 (P2)x
BC1F1
MARKER : TA 1 8
150bp
130bp
Priority traits Source of
variation
Technology Current Status
Drought QTL hotspot IB JG 11, JAKI 9218,
ICCV 10, JG 14
Heat Available CB, Marker
Dev, IB
Many breeding lines
avail
Dry root rot Mod source Patho, GR,
CB, IB
protocol available
Photo-thermo
insensitive
Available CB, Marker
Dev
few breed lines,
mapping popl.
Herbicide tol Available CB, Marker
Dev, GE
few breed lines
available
Helicoverpa Not avail GE Bt-lines available
from IIPR, ICRISAT
Chickpea-Priority traits
Priority traits Source of
variation
Technology Current Status
Green seeded Available CB limited efforts
Parching quality Not available CB limited efforts
P- acquisition
efficiency (PAE)
Available Marker Dev limited efforts
Protein content,
Fe, Zn
Available Marker Dev limited efforts
Chickpea-Priority traits
Challenge: Gene identification, cloning and
transformation: Gene controlling seeds per pod from
C. cuneatum : 4-5 seeds per pod
Ensuring genetic gains
• Development of high yielding varieties having desired traits
• Farmers’ Participatory Varietal Selection Trials
• Mini-kits programs- small seed packets distribution
• Front line demonstrations- farmers’ fields
• Ensuring availability of quality seed of new releases
• Policy support
Assessing genetic gains- Future plan
• Large scale seed production- creation of 150 Seed-Hubs (52 on
chickpea)- investment by Federal Government
• Linking chickpea production with Prime Minister Crop Insurance
Scheme (PMFMY)
• Tracking varieties adoption in areas selected area- future plan
(quality seed sale, sampling from farmers’ fields and diagnostic
markers)
• Procurements by the Government ensuring benefits to farming
community
Seed production- Quality Assurance
 Genetic purity
 Certification programs
Grow out test is the way to
check genetic purity: 3-10
months program-
alternate is
•Development of variety
specific diagnostic
markers
To conclude………
•With the kind of research network, genetic resources, breeding
techniques, human resources, infrastructure etc. available for
research: varieties with enhanced genetic yield potential will be
developed ; and
•Collaborative efforts are going to ensure high speed for genetic
improvement ensuring genetic gains
•Close collaborations- harnessing available strength will be the key
for success in future when investments are reducing
TL III Genetic Gains Program improvement plan_Chickpea_India

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TL III Genetic Gains Program improvement plan_Chickpea_India

  • 1. TL III Program Improvement Plan- Chickpea in India Sushil K Chaturvedi and B.B. Singh
  • 2. Chickpea in India Source: http://pib.nic.in/newsite/pmreleases.aspx?mincode=27 * Third estimates (chickpea share is 43.84%) released on 9th May 2016 0 2 4 6 8 10 12 0 200 400 600 800 1000 1200 Yield (kg/ha) Area (m ha) (Production (M t) *Pulses: 17.06 m t, *Chickpea: 7.48 m t
  • 3. Chickpea in contrasting agro-climatic zones Zone Trait Stress Yield limiting constraints North Excessive biomass Temperature extremities 130-170 days crop duration, fog & frost, temperature extremities, flower drop, poor sunlight South Less biomass Terminal drought 85-100 days crop duration,, harsh post-anthesis period Central Less biomass Terminal drought & heat 110-125 days crop duration, harsh post-anthesis period, frost, drought and heat stress
  • 4. Productivity Constraints • Climate change- vulnerability of varieties to fluctuating temperatures, intermittent drought and heavy downpours • Narrow genetic base - vulnerability to stresses • Declining TFP in irrigated areas dominated by cereal-cereal cropping system Emerging diseases, insect pests and weeds posing serious threat (minor ones are becoming major) • Regional shifts cooler to warmer regions • Emerging pests • Problematic soils, and high/low soil moisture at seeding
  • 6. Achievements >71 varieties in seed chain • Diseases resistant : Fusarium wilt and Ascochyta blight • Drought tolerant: Rainfed conditions • Heat tolerant : Delayed sowing • Salinity tolerance • Lodging tolerance
  • 7. Farmers’ preferred traits Extra-large seeded kabuli • MNK 1, Phule G 0517 , PKV 4-1 Large seeds kabuli • IPCK 2002-29, ICK 2004-29, KAK 2 Short duration • JG 14, JSC 55, JSC 56, IPC 2006-77 Mechanical harvesting • NBeG 47 • GBM 2 Green seeds • RSG 992, sadabahar
  • 8. Research Priorities • Germplasm enhancement- Prebreeding • Resistance breeding- Multiple adversities resistance • Varieties with farmers’ preferred traits- seed size & intercropping • Improving nutrient use efficiency- ‘P’ acquisition efficiency • Reducing cost of cultivation- Machine harvestable varieties & - Herbicide tolerance • Trait identification- Immature green chickpea grain, nutrients rich grains, milling quality, etc. • Ensuring genetic purity : Variety specific diagnostic markers
  • 9. Genetic Resources Maintained at IIPR Crop Germplasm Acc. Wild Wild sps. Landraces Chickpea 4730 123 6 188 >18000 acc. maintained in different gene banks
  • 10. Value addition to PGR • PGR conservation: NBPGR, ICRISAT, ICARDA • Identification of donors – NARS, ICRISAT, ICARDA • Utilization by NARS Precise phenotyping of genetic resources (core or mini-core sets) including wild relatives & primitive landraces to indentify donors
  • 11. PGR- reservoir of useful genes  198 land races and 120 accessions of 6 wild Cicer species were characterized .  3003 germplasm accessions maintained for further utilization.
  • 12. Pre-breeding efforts using primitive landraces & wild Cicer species Screening against •Abiotic stresses (heat, cold & soil moisture stress) •Biotic stresses (diseases: BGM , AB) Reservoir of useful genes- can help in alleviating tolerance against abiotic stresses
  • 13. Pre-breeding for broadening genetic base Interspecific crosses made using • ILWC 179 & ILWC 245 (C. echinospermum) • ILWC 212, EC 556270, ILWC 237 (C. reticulatum) Several crosses using landraces were made : • ILC 3512, • ILC 3518 • ILC 3279 Variability released for • Seed per pod: 2-3 seeds • Profuse primary branches: 8-10 • Profuse secondary branches: 17-23 • Plant height >90 cm. • Lodging tolerance • Heat tolerance
  • 14. ILC 115: Heat tolerant >350C temperature) • 71 acc. of wild Cicer sps screened against heat stress • ILC 115, EC 556270 and ILWC 21 : Heat tolerant • Pollen germination & pollen tube growth observed at >350C temperature • Similar genotypic variations observed for membrane stability Phenotyping against heat stress
  • 15. Genotype Yield (kg/ha) 100 seed wt. (g) Pant G 186 1611 16.3 BG 372 1488 15.5 KPG 59 1429 17.8 IPC 2010-62 1719 25.7 IPC 2006-77 1817 16.3 Improving Heat Tolerance (over 3 years; 7/11 locations)
  • 16. Phenotyping for Herbicide Tolerance Tolerant: ICC 1161, ICC 1205, ICC 13816, IPC 2008-29, IPC 2006- 134, ICC 1710, ICC 2629, GL1006 , ICCV 08102, IPC 2010-56 & IPC 2010-173 ICC 5484: most sensitive and showed leaf burning within 7 days of herbicide application Two mapping populations are being developed Transcriptome analysis performed- communicated
  • 17. Restructuring traditional plant types • Resource conservation • High population density • Mechanical harvesting Plant type (tall : >60 cm. , Growth: Erect/semi-erect), Profuse primary branches of equal height, medium large leaflets, podding above 20-25 cm from the base, and >550 angle for branches
  • 18. Reduction in plant biomass due to low P availability in soil varied from less than 10 to 80% among the genotypes. Better P use efficiency was observed in BG 256, IPC 2010-167 and lowest in IPC 2005-44 followed by JG 16. This indicates presence of genetic variations for P use efficiency. 0.0 50.0 100.0 150.0 200.0 250.0 300.0 350.0 400.0 IPC2005-44 JG-16 IPC 2010-152 BG 256 IIPC 2010- 167 172.71 241.55 284.09 364.96 384.62 P-useefficiency(gshoot/ gPuptake) Chickpea Varieties Phosphorus Acquisition Efficiency
  • 19. Emerging Diseases Rust (Uromyces ciceris-arietini), is emerging as one the important disease under late sown conditions of Terai, Eastern and Southern India. Alternaria Blight (Alternaria alternata), Dry root rot and Stunt (Bean leafroll leuteo virus, chickpea chlorotic dwarf geminivirus) are emerging diseases in eastern India
  • 20. Ensuring maximum returns: Tailoring crop plants for intercropping systems Plant types ensuring better solar light interception on both the crops need to be ensured while developing suitable varieties of chickpea.
  • 21. Immature Green Chickpea Grain (IGCG)- for vegetable purpose as 'Health Food' •Extra-early maturing and cold tolerant varieties •Retention of green colour of immature grains: till physiological maturity Punjab, Haryana, Rajasthan, western Uttar Pradesh, Jharkhand, Chhota Nagpur plateau (South Bihar, Southern West Bengal, Odisha etc.
  • 22. Research strategies • Germplasm enhancement- Prebreeding & value addition to PGR • Integrated Breeding – deployment of molecular markers to enhance efficiency of selection • Accelerated Breeding – Utilizing rapid generation advancement, and • Transgenic technology- utilizing genes from diverse sources
  • 23. Rapid Generation advancement IIPR Off-Season Nursery, UAS Campus, Dharwad 2-3 generations can be ensured, if facilities are utilized properly June/July to October/November
  • 24. Transforming using cry1Ac : DCP 92-3 A B C D E F G H I [A: Germinated seedlings; B: Removal of radical and plumule; C: Axillary meristem explants, D: Initiation of multiple shoots; E: Multiplication and elongation of shoots; F: Separated green healthy shoots; G: Graft onto non-transgenic root stock; H: hardening of grafted plants; I: mature fertile plants]
  • 25. Genomics Enabled pulses Improvement • Development of molecular markers • Mapping of gene(s)/QTLs conferring resistance • Identification of linked markers to targeted traits • Deployment of molecular markers in breeding Deploy molecular markers- for traits where selection during segregating generations is difficult ??????
  • 26. BC3F4 and BC3F3 generation of the cross Pusa 256 x Vijay screened against foc race 2 in sick plots, 4 progenies were found highly resistant and one resistant, seed is being multiplied. •Introgression of race specific resistance to FW (Foc 2) in variety Pusa 256 Deployment of molecular markers for developing wilt resistant varieties- for learning
  • 27. MABC Lines for drought testing MABC for drought tolerance 9/7/2016 27 F1 (Off season 2012) Back cross DCP92-3 ICC4958x F1 BC2F1 KWR108 (P1) ICC 4958 (P2)x BC1F1 MARKER : TA 1 8 150bp 130bp
  • 28. Priority traits Source of variation Technology Current Status Drought QTL hotspot IB JG 11, JAKI 9218, ICCV 10, JG 14 Heat Available CB, Marker Dev, IB Many breeding lines avail Dry root rot Mod source Patho, GR, CB, IB protocol available Photo-thermo insensitive Available CB, Marker Dev few breed lines, mapping popl. Herbicide tol Available CB, Marker Dev, GE few breed lines available Helicoverpa Not avail GE Bt-lines available from IIPR, ICRISAT Chickpea-Priority traits
  • 29. Priority traits Source of variation Technology Current Status Green seeded Available CB limited efforts Parching quality Not available CB limited efforts P- acquisition efficiency (PAE) Available Marker Dev limited efforts Protein content, Fe, Zn Available Marker Dev limited efforts Chickpea-Priority traits Challenge: Gene identification, cloning and transformation: Gene controlling seeds per pod from C. cuneatum : 4-5 seeds per pod
  • 30. Ensuring genetic gains • Development of high yielding varieties having desired traits • Farmers’ Participatory Varietal Selection Trials • Mini-kits programs- small seed packets distribution • Front line demonstrations- farmers’ fields • Ensuring availability of quality seed of new releases • Policy support
  • 31. Assessing genetic gains- Future plan • Large scale seed production- creation of 150 Seed-Hubs (52 on chickpea)- investment by Federal Government • Linking chickpea production with Prime Minister Crop Insurance Scheme (PMFMY) • Tracking varieties adoption in areas selected area- future plan (quality seed sale, sampling from farmers’ fields and diagnostic markers) • Procurements by the Government ensuring benefits to farming community
  • 32. Seed production- Quality Assurance  Genetic purity  Certification programs Grow out test is the way to check genetic purity: 3-10 months program- alternate is •Development of variety specific diagnostic markers
  • 33. To conclude……… •With the kind of research network, genetic resources, breeding techniques, human resources, infrastructure etc. available for research: varieties with enhanced genetic yield potential will be developed ; and •Collaborative efforts are going to ensure high speed for genetic improvement ensuring genetic gains •Close collaborations- harnessing available strength will be the key for success in future when investments are reducing