This study developed a targeted drug delivery system using Multistage Nanovectors (MSV) conjugated with VEGFR2 antibodies to specifically target blood vessels that support tumor growth. MSV were functionalized with VEGFR2 antibodies and shown to bind endothelial cells expressing VEGFR2 in vitro, including under flow conditions mimicking blood flow. The MSV were also internalized by the endothelial cells. This targeted delivery system aims to improve cancer therapy by efficiently transporting anti-angiogenic antibodies to their VEGFR2 targets on endothelial cells, preventing blood vessel formation and limiting tumor growth. Future work will investigate this system's potential for dual-function delivery of anti-angiogenic antibodies and anti-cancer drugs to tumors.
1. 22Rv1 prostate cancer cells were treated with enzalutamide to generate resistant cells (22Rv1-R).
2. Microscopy showed no morphological differences between 22Rv1 and 22Rv1-R cells. Western blot analysis revealed higher MDR1 expression in 22Rv1-R cells.
3. MTT assay demonstrated 22Rv1-R cell viability remained stable in increasing enzalutamide concentrations, indicating resistance, while 22Rv1 cell viability decreased.
This slide is about the basics of mRNA-based therapy. The content includes: definition of mRNA, timeline of mRNA therapeutics, action mechanism and development strategies of mRNA drugs, therapeutic mRNA applications, and the related services provided by Creative Biolabs.
Functional Analysis of the Molluscum Contagiosum Virus MC160 Death Effector D...Sarah Weber
This document is a thesis submitted by Sarah Weber in partial fulfillment of the requirements for a Master of Science degree in Biology from Seton Hall University. The thesis investigates the functional analysis of the RxDL motif in the MC160 death effector domain-containing protein encoded by the Molluscum contagiosum virus. The thesis provides background on MCV and the MC159 and MC160 proteins. It describes experiments conducted to generate mutants of the RxDL motif in MC160 and assess their ability to inhibit TBK1- and MAVS-induced activation of interferon-beta. The results showed that surprisingly, the RxDL motif mutants of MC160 retained the ability to inhibit IFN-β activation.
The EpiTect Methyl qPCR System provides a simple, fast and reliable method for DNA methylation analysis without bisulfite conversion. It uses a restriction digest followed by quantitative PCR to generate methylation profiles of gene panels related to various diseases. This technology is useful for studying stem cell growth, cancer and other human diseases. It provides genome-wide coverage and is a sensitive method for detecting methylation, with results comparable to bisulfite sequencing.
Targeted and Unbiased Screen for Genetic Suppressors of the Legionella pneumo...Chetan Hebbale
This document describes research into identifying genetic suppressors of toxicity caused by the Legionella pneumophila effector protein LegC7 in Saccharomyces cerevisiae. A targeted screen of Class E vacuolar protein sorting gene deletions did not suppress LegC7 toxicity except for vps27Δ. An unbiased ethyl methanesulfonate mutagenesis screen identified yeast strains where LegC7 toxicity was reversed, likely due to genomic or plasmid mutations. The genomes of two strains will be sequenced to find specific mutations, and an overexpression screen will search for genes that reduce LegC7 toxicity when overexpressed.
Widespread human T cell receptor beta variable gene polymorphism: implication...Thermo Fisher Scientific
Polymorphism within the TCRB variable gene (TRBV) has been linked to chronic autoimmune diseases such as Type 1 Diabetes, Rheumatoid Arthritis, Psoriatic Arthritis, Multiple Sclerosis and Asthma (1-8), and may also be mechanistically linked to immune mediated adverse events (IMAEs) during immunotherapy (9-11). Here we use the Ion-AmpliSeq™ Immune Repertoire Plus TCRB assay to evaluate TRBV gene polymorphism in a group of 85 Caucasians with melanoma. The assay provides coverage of all three CDR domains to enable detection of TRBV polymorphism. We find evidence of extensive genetic diversity within the TRBV gene, including 15 nonsynonymous variants that are absent from the IMGT database (12). TRBV gene allele typing may provide rich biomarker information for the prediction of IMAEs and chronic autoimmune disease.
Next generation sequencing (NGS) can simultaneously detect aneuploidy and gene defects in single cells. It involves fragmenting DNA, sequencing short fragments, and using bioinformatics to map the fragments to the human genome. NGS can detect chromosome abnormalities and mutations with the same resolution as array comparative genomic hybridization. It also allows detection of mitochondrial DNA abnormalities and simultaneous analysis of aneuploidy and gene defects. In the future, whole gene sequencing may be possible. NGS is being used successfully for preimplantation genetic diagnosis and was used to produce the first baby born from NGS analysis.
Insights into the tumor microenvironment and therapeutic T cell manufacture r...Thermo Fisher Scientific
TCRβ immune repertoire analysis by next-generation sequencing is emerging as a valuable tool for research studies of the tumor microenvironment and potential immune responses to cancer immunotherapy1-4. Here we describe a multiplex PCR-based TCRβ sequencing assay (Ion AmpliSeqTM Immune Repertoire Assay Plus – TCRβ) that leverages Ion AmpliSeq library construction chemistry and the long read capability of the Ion S5 530TM chip to provide coverage of all three CDR domains of the human TCRβ chain. We demonstrate use of the assay to evaluate tumor-infiltrating T cell repertoire features and monitor manufacture of therapeutic T cells.
1. 22Rv1 prostate cancer cells were treated with enzalutamide to generate resistant cells (22Rv1-R).
2. Microscopy showed no morphological differences between 22Rv1 and 22Rv1-R cells. Western blot analysis revealed higher MDR1 expression in 22Rv1-R cells.
3. MTT assay demonstrated 22Rv1-R cell viability remained stable in increasing enzalutamide concentrations, indicating resistance, while 22Rv1 cell viability decreased.
This slide is about the basics of mRNA-based therapy. The content includes: definition of mRNA, timeline of mRNA therapeutics, action mechanism and development strategies of mRNA drugs, therapeutic mRNA applications, and the related services provided by Creative Biolabs.
Functional Analysis of the Molluscum Contagiosum Virus MC160 Death Effector D...Sarah Weber
This document is a thesis submitted by Sarah Weber in partial fulfillment of the requirements for a Master of Science degree in Biology from Seton Hall University. The thesis investigates the functional analysis of the RxDL motif in the MC160 death effector domain-containing protein encoded by the Molluscum contagiosum virus. The thesis provides background on MCV and the MC159 and MC160 proteins. It describes experiments conducted to generate mutants of the RxDL motif in MC160 and assess their ability to inhibit TBK1- and MAVS-induced activation of interferon-beta. The results showed that surprisingly, the RxDL motif mutants of MC160 retained the ability to inhibit IFN-β activation.
The EpiTect Methyl qPCR System provides a simple, fast and reliable method for DNA methylation analysis without bisulfite conversion. It uses a restriction digest followed by quantitative PCR to generate methylation profiles of gene panels related to various diseases. This technology is useful for studying stem cell growth, cancer and other human diseases. It provides genome-wide coverage and is a sensitive method for detecting methylation, with results comparable to bisulfite sequencing.
Targeted and Unbiased Screen for Genetic Suppressors of the Legionella pneumo...Chetan Hebbale
This document describes research into identifying genetic suppressors of toxicity caused by the Legionella pneumophila effector protein LegC7 in Saccharomyces cerevisiae. A targeted screen of Class E vacuolar protein sorting gene deletions did not suppress LegC7 toxicity except for vps27Δ. An unbiased ethyl methanesulfonate mutagenesis screen identified yeast strains where LegC7 toxicity was reversed, likely due to genomic or plasmid mutations. The genomes of two strains will be sequenced to find specific mutations, and an overexpression screen will search for genes that reduce LegC7 toxicity when overexpressed.
Widespread human T cell receptor beta variable gene polymorphism: implication...Thermo Fisher Scientific
Polymorphism within the TCRB variable gene (TRBV) has been linked to chronic autoimmune diseases such as Type 1 Diabetes, Rheumatoid Arthritis, Psoriatic Arthritis, Multiple Sclerosis and Asthma (1-8), and may also be mechanistically linked to immune mediated adverse events (IMAEs) during immunotherapy (9-11). Here we use the Ion-AmpliSeq™ Immune Repertoire Plus TCRB assay to evaluate TRBV gene polymorphism in a group of 85 Caucasians with melanoma. The assay provides coverage of all three CDR domains to enable detection of TRBV polymorphism. We find evidence of extensive genetic diversity within the TRBV gene, including 15 nonsynonymous variants that are absent from the IMGT database (12). TRBV gene allele typing may provide rich biomarker information for the prediction of IMAEs and chronic autoimmune disease.
Next generation sequencing (NGS) can simultaneously detect aneuploidy and gene defects in single cells. It involves fragmenting DNA, sequencing short fragments, and using bioinformatics to map the fragments to the human genome. NGS can detect chromosome abnormalities and mutations with the same resolution as array comparative genomic hybridization. It also allows detection of mitochondrial DNA abnormalities and simultaneous analysis of aneuploidy and gene defects. In the future, whole gene sequencing may be possible. NGS is being used successfully for preimplantation genetic diagnosis and was used to produce the first baby born from NGS analysis.
Insights into the tumor microenvironment and therapeutic T cell manufacture r...Thermo Fisher Scientific
TCRβ immune repertoire analysis by next-generation sequencing is emerging as a valuable tool for research studies of the tumor microenvironment and potential immune responses to cancer immunotherapy1-4. Here we describe a multiplex PCR-based TCRβ sequencing assay (Ion AmpliSeqTM Immune Repertoire Assay Plus – TCRβ) that leverages Ion AmpliSeq library construction chemistry and the long read capability of the Ion S5 530TM chip to provide coverage of all three CDR domains of the human TCRβ chain. We demonstrate use of the assay to evaluate tumor-infiltrating T cell repertoire features and monitor manufacture of therapeutic T cells.
1. The document analyzes a serine protease gene found in QPX, a pathogen of quahogs. It was found to belong to the subtilase family and contain the catalytic triad of amino acids.
2. Expression of the serine protease gene varied across QPX strains and was temperature dependent, being significantly upregulated during contact with host tissue.
3. A serine protease inhibitor gene was found in quahogs that likely plays a role in the immune response against QPX infection. Expression of this gene varied across quahog strains.
This document discusses cytomegalovirus (CMV) infections in patients with hematolymphoid malignancies. CMV is a common herpesvirus that can cause disease in immunocompromised patients. The document outlines the virology of CMV, clinical manifestations such as pneumonia and esophagitis, diagnostic methods including PCR and antigen testing, and treatment options like ganciclovir and valganciclovir. It emphasizes that pre-emptive antiviral therapy based on CMV detection can help prevent disease, and that while prophylaxis is not routinely needed, high-risk patients may benefit from monitoring and early treatment if infection is found.
The document describes a new reporter system for evaluating the specificity and efficacy of CRISPR/Cas9 and guide RNAs (gRNAs). The system uses an EGFP reporter plasmid containing the target sequence of interest. When co-transfected with Cas9 and the corresponding gRNA, double strand breaks at the target site disrupt EGFP expression. This allows unbiased measurement of Cas9 and gRNA activity levels. The document demonstrates that mismatches between gRNAs and target sequences can occur anywhere in the gRNA and depend on both the gRNA sequence and Cas9 construct used. This reporter system promises to improve genomic engineering success rates by facilitating selection of optimal gRNA and Cas9 combinations.
Decades of cancer research including comprehensive molecular profiling combined with the
development of a broad array of targeted therapies have created the opportunity to transform
cancer care in the near future by implementing precision oncology based approaches. An
important element of this system is the widespread availability of robust and cost-effective
multivariate profiling methods in order to characterize relevant cancer associated molecular
alterations.
Current commercially available multivariate profiling methods vary dramatically with regard to
the number of cancer genes interrogated. Given that many large scale and detailed molecular
profiling studies have been completed, the landscape of somatic alterations in solid tumors is
reasonably well-known. Furthermore, the specific gene variants that are relevant to application
of targeted therapies are also a matter of record. Therefore, we set out to define the number of
relevant cancer genes for precision oncology research based on the currently available
empirical evidence.
Sanja Selak of Intercell AG, Vienna, Austria, presents at the ProImmune Antigen Characterization and Biomarker Discovery Summit, January 2011.
Intercell develops vaccines for the prevention and treatment of infectious diseases
Sequencing the circulating and infiltrating T-cell repertoire on the Ion S5TMThermo Fisher Scientific
T-Cell receptor (TCR) repertoire sequencing by next-generation
sequencing (NGS) is a valuable tool for building a deeper
understanding of the adaptive immune system. As immunotherapy,
particularly T-cell therapies, show increasing potential in treating
cancer, the ability to gain a detailed, unbiased view of the TCR
repertoire becomes imperative for biomarker discovery, immune
response to treatment, and study of tumor microenvironments. A key
question the field seeks to understand is the relationship between
circulating T-cells and infiltrating T-cells at the tumor site. Here, we
present a novel AmpliSeq approach for TCR repertoire sequencing
using the Ion Torrent S5 sequencer which leverages simplified
workflows and offers up to 600 bp reads which allow for a more
complete characterization of the entire V(D)J region of TCRβ. With a
unique long read length capability, this method can leverage mRNA as
input, which minimizes requirement as starting materials (10-500ng for
typical use cases) and focusing sequencing to productive TCRβ
arrangements.
Gene Olinger, USAMRIID, Fort Detrick USA, presents at the ProImmune Antigen Characterization and Biomarker Discovery Summit, January 2011.
Protective Immune Reponses to Ebola Virus
2015_Annual AACR_Poster_TROV Technology_Finalerin clark
1) Quantitative assays using enrichment PCR followed by NGS were developed to detect KRAS and EGFR mutations in urine and plasma ctDNA with single copy detection sensitivity.
2) In KRAS positive patients, median mutant ctDNA was 10 times higher in urine versus plasma.
3) Clinical utility is supported by studies showing correlation of urinary and plasma ctDNA with tumor burden, response to therapy, disease progression, and monitoring of minimal residual disease.
The document discusses using aptamers to target cells. Aptamers are nucleic acid molecules that can bind targets with high specificity and affinity, and have advantages over antibodies like small size and easy synthesis. The author describes selecting aptamers against cell surface receptors like transferrin receptor and PSMA on cancer cells, and DEC205 on dendritic cells. This allows targeted delivery of cargo like siRNA, drugs, or antigens to specific cell types for research and clinical applications like cancer treatment and vaccines.
1) The document summarizes research into genetic interactors of the BRCA2 tumor suppressor gene, which is linked to hereditary breast cancer. A retroviral screening identified BRE as a genetic interactor that rescues lethality in BRCA2-deficient cells.
2) Further experiments showed that BRE overexpression in BRCA2-deficient cells leads to increased levels of the Cdc25A cell cycle regulator after DNA damage, preventing cell cycle arrest.
3) BRE was found to interact with the transcription factor ATF3 and induce transcription of Cdc25A. Reporter assays aim to identify the role of ATF3 binding sites on the Cdc25A promoter in regulating its transcription
The document describes experiments conducted to induce apoptosis in non-invasive retinoblastoma cell lines using tissue-specific promoter guided suicide gene transfection. Key objectives included propagating the suicide gene plasmid, transfecting it into a non-invasive retinoblastoma cell line, validating transfection efficiency through various assays, and studying the apoptotic effects induced. Transfection was confirmed at the mRNA and protein level. Assays showed over 60% of transfected cells undergoing early apoptosis and 35% undergoing late apoptosis, demonstrating the suicide gene successfully induced apoptosis in the targeted retinoblastoma cells.
CRISPR/Cas9 was used as a gene editing tool to repair the FANCC c.456+4A>T mutation, which causes Fanconi anemia. The mutation was corrected in skin fibroblasts from a patient with the mutation. Tests at the DNA, RNA, and protein levels showed correction of the mutation. No off-target effects were observed. The nickase version of CRISPR/Cas9 was more efficient and reliable than the nuclease version for correcting the mutation. This demonstrates the potential of CRISPR/Cas9 for treating genetic diseases like Fanconi anemia by directly correcting mutations.
Ø Researchers used CRISPR/Cas9 nuclease and nickase to target and repair the c.456+4A>T mutation in the FANCC gene, which causes Fanconi anemia (FA), in human fibroblasts derived from an FA patient.
Ø Both nuclease and nickase mediated repair of the mutation, restoring normal FANCC gene function, though nickase was more efficient due to preferentially inducing the homology-directed repair pathway.
Ø Genome-wide analyses found no off-target effects, confirming the CRISPR reagents specifically targeted the intended FANCC locus. This provides proof-of-principle that CR
kSORTTM is a non-invasive blood test that uses gene expression analysis to provide an immune risk index score for renal transplant patients. It can help establish risk of graft injury or rejection in a more sensitive way than current monitoring methods like creatinine levels and biopsies. The test has shown high accuracy and correlation with biopsy results in clinical studies, with a sensitivity of 100% and specificity of 96% after excluding indeterminate results. It has the potential to improve monitoring of transplant patients and help target higher risk individuals for closer surveillance.
This study evaluated novel human recombinant anti-HER2/neu antibodies in different cancer cell lines. Three specific and high affinity single-chain fragment variable (scFv) antibodies against HER2 were selected from a human antibody library and found to inhibit the growth of HER2-overexpressing breast cancer cell lines. The scFvs reduced HER2 expression at both the gene and protein levels and a combination of the three scFvs was more effective than individual scFvs. The selected scFvs also down-regulated VEGF and SDF-1 gene expression, suggesting potential as a treatment for cancers that overexpress HER2.
ProImmune Antigen Characterization Summit Paul Mossamandacturner
This document summarizes research on the immune response to cytomegalovirus (CMV) and cancer-testis antigens (CTAgs). It discusses how CMV elicits a massive immune response, occupying up to 40% of CD8+ T cells. This response declines with immunosuppression. It also explores using CMV-specific T cells for immunotherapy after stem cell transplantation. The document then examines CTAgs, which are expressed in cancers and elicit anti-tumor immune responses, but challenges remain in understanding their efficacy.
This document discusses oncolytic virus therapies, including their mechanisms of action, preclinical studies, experiences with patients, and future outlook. It provides an overview of deletion mutant oncolytic adenoviruses that selectively replicate in cancer cells. Clinical trials have shown safety and some efficacy of these viruses as monotherapies and in combination with other treatments like radiation or chemotherapy. Oncolytic viruses show promise as a novel cancer treatment approach.
polarized macrophages in choroidal neovascularizationYasuo Yanagi
1) Macrophages play an important role in choroidal neovascularization (CNV) and can have both pro-angiogenic and anti-angiogenic effects. Specifically, classically activated M1 macrophages promote CNV through VEGF expression while alternatively activated M2 macrophages may suppress CNV.
2) Studies in mouse models of CNV show recruitment of inflammatory monocytes and lymphocytes but macrophages, not other immune cells, are crucial for CNV formation. Laser induction of CNV increases inflammatory monocytes in peripheral blood.
3) Sympathetic denervation and beta-3 adrenoreceptor blockade inhibit CNV by decreasing the mobilization of inflammatory monocytes from bone marrow and spleen reservoirs. The spleen appears
The document discusses the role of MIC-A antibodies in renal allograft loss. It presents the case of a patient whose renal function gradually deteriorated, associated with a weakly positive MICA antibody screen. Biopsies showed glomerulopathy and chronic allograft nephropathy. Based on the positive MICA screen, the patient was treated for possible MICA-related rejection with steroids, which reduced their creatinine level. The document then reviews the expression of MICA antigens and their role in activating NK and T cells through NKG2D engagement. It discusses evidence that MICA antibody mismatch can lead to graft loss and the challenges in detecting non-HLA antibodies.
Tumor Mutational Load assessment of FFPE samples using an NGS based assayThermo Fisher Scientific
Understanding the molecular determinants of response to immune checkpoint blockade inhibitors is a critical unmet need for translational oncology research. Research tools to characterize the mutational landscape of cancers may potentially help identify predictive biomarkers for immuno-therapy that can be tested in future studies. Herein, we describe a targeted Ion AmpliSeq assay to determine the mutational load and signature of cancer research samples.
#Mwf2014 workshop1 people, places, things - how to create connections with a...mladly
This document provides an overview of various case studies, methods, and best practices for using social media and digital tools. It summarizes several projects including Twitter's new video tool, Instagram and Vine for sharing short videos, the #FirstWorldProblems hashtag campaign, Google Trends for analyzing search patterns, Google Earth and Cultural Institute for exploring places and culture virtually, Europeana for online exhibitions, the Intel Museum of Me for creating a personal digital archive, and several public art projects using new media. The document is authored by Dr. Martha Ladly and provides her contact information.
Panel discussion- Preferred offshore hubs for IndiansIndia inc
This Presentation is from Panel discussion on Preferred Offshore Hubs For Indians session at the Global Wealth Management Conclave 2014 organised by India Inc - http://www.indiaincorporated.com- on April 7, 2014
1. The document analyzes a serine protease gene found in QPX, a pathogen of quahogs. It was found to belong to the subtilase family and contain the catalytic triad of amino acids.
2. Expression of the serine protease gene varied across QPX strains and was temperature dependent, being significantly upregulated during contact with host tissue.
3. A serine protease inhibitor gene was found in quahogs that likely plays a role in the immune response against QPX infection. Expression of this gene varied across quahog strains.
This document discusses cytomegalovirus (CMV) infections in patients with hematolymphoid malignancies. CMV is a common herpesvirus that can cause disease in immunocompromised patients. The document outlines the virology of CMV, clinical manifestations such as pneumonia and esophagitis, diagnostic methods including PCR and antigen testing, and treatment options like ganciclovir and valganciclovir. It emphasizes that pre-emptive antiviral therapy based on CMV detection can help prevent disease, and that while prophylaxis is not routinely needed, high-risk patients may benefit from monitoring and early treatment if infection is found.
The document describes a new reporter system for evaluating the specificity and efficacy of CRISPR/Cas9 and guide RNAs (gRNAs). The system uses an EGFP reporter plasmid containing the target sequence of interest. When co-transfected with Cas9 and the corresponding gRNA, double strand breaks at the target site disrupt EGFP expression. This allows unbiased measurement of Cas9 and gRNA activity levels. The document demonstrates that mismatches between gRNAs and target sequences can occur anywhere in the gRNA and depend on both the gRNA sequence and Cas9 construct used. This reporter system promises to improve genomic engineering success rates by facilitating selection of optimal gRNA and Cas9 combinations.
Decades of cancer research including comprehensive molecular profiling combined with the
development of a broad array of targeted therapies have created the opportunity to transform
cancer care in the near future by implementing precision oncology based approaches. An
important element of this system is the widespread availability of robust and cost-effective
multivariate profiling methods in order to characterize relevant cancer associated molecular
alterations.
Current commercially available multivariate profiling methods vary dramatically with regard to
the number of cancer genes interrogated. Given that many large scale and detailed molecular
profiling studies have been completed, the landscape of somatic alterations in solid tumors is
reasonably well-known. Furthermore, the specific gene variants that are relevant to application
of targeted therapies are also a matter of record. Therefore, we set out to define the number of
relevant cancer genes for precision oncology research based on the currently available
empirical evidence.
Sanja Selak of Intercell AG, Vienna, Austria, presents at the ProImmune Antigen Characterization and Biomarker Discovery Summit, January 2011.
Intercell develops vaccines for the prevention and treatment of infectious diseases
Sequencing the circulating and infiltrating T-cell repertoire on the Ion S5TMThermo Fisher Scientific
T-Cell receptor (TCR) repertoire sequencing by next-generation
sequencing (NGS) is a valuable tool for building a deeper
understanding of the adaptive immune system. As immunotherapy,
particularly T-cell therapies, show increasing potential in treating
cancer, the ability to gain a detailed, unbiased view of the TCR
repertoire becomes imperative for biomarker discovery, immune
response to treatment, and study of tumor microenvironments. A key
question the field seeks to understand is the relationship between
circulating T-cells and infiltrating T-cells at the tumor site. Here, we
present a novel AmpliSeq approach for TCR repertoire sequencing
using the Ion Torrent S5 sequencer which leverages simplified
workflows and offers up to 600 bp reads which allow for a more
complete characterization of the entire V(D)J region of TCRβ. With a
unique long read length capability, this method can leverage mRNA as
input, which minimizes requirement as starting materials (10-500ng for
typical use cases) and focusing sequencing to productive TCRβ
arrangements.
Gene Olinger, USAMRIID, Fort Detrick USA, presents at the ProImmune Antigen Characterization and Biomarker Discovery Summit, January 2011.
Protective Immune Reponses to Ebola Virus
2015_Annual AACR_Poster_TROV Technology_Finalerin clark
1) Quantitative assays using enrichment PCR followed by NGS were developed to detect KRAS and EGFR mutations in urine and plasma ctDNA with single copy detection sensitivity.
2) In KRAS positive patients, median mutant ctDNA was 10 times higher in urine versus plasma.
3) Clinical utility is supported by studies showing correlation of urinary and plasma ctDNA with tumor burden, response to therapy, disease progression, and monitoring of minimal residual disease.
The document discusses using aptamers to target cells. Aptamers are nucleic acid molecules that can bind targets with high specificity and affinity, and have advantages over antibodies like small size and easy synthesis. The author describes selecting aptamers against cell surface receptors like transferrin receptor and PSMA on cancer cells, and DEC205 on dendritic cells. This allows targeted delivery of cargo like siRNA, drugs, or antigens to specific cell types for research and clinical applications like cancer treatment and vaccines.
1) The document summarizes research into genetic interactors of the BRCA2 tumor suppressor gene, which is linked to hereditary breast cancer. A retroviral screening identified BRE as a genetic interactor that rescues lethality in BRCA2-deficient cells.
2) Further experiments showed that BRE overexpression in BRCA2-deficient cells leads to increased levels of the Cdc25A cell cycle regulator after DNA damage, preventing cell cycle arrest.
3) BRE was found to interact with the transcription factor ATF3 and induce transcription of Cdc25A. Reporter assays aim to identify the role of ATF3 binding sites on the Cdc25A promoter in regulating its transcription
The document describes experiments conducted to induce apoptosis in non-invasive retinoblastoma cell lines using tissue-specific promoter guided suicide gene transfection. Key objectives included propagating the suicide gene plasmid, transfecting it into a non-invasive retinoblastoma cell line, validating transfection efficiency through various assays, and studying the apoptotic effects induced. Transfection was confirmed at the mRNA and protein level. Assays showed over 60% of transfected cells undergoing early apoptosis and 35% undergoing late apoptosis, demonstrating the suicide gene successfully induced apoptosis in the targeted retinoblastoma cells.
CRISPR/Cas9 was used as a gene editing tool to repair the FANCC c.456+4A>T mutation, which causes Fanconi anemia. The mutation was corrected in skin fibroblasts from a patient with the mutation. Tests at the DNA, RNA, and protein levels showed correction of the mutation. No off-target effects were observed. The nickase version of CRISPR/Cas9 was more efficient and reliable than the nuclease version for correcting the mutation. This demonstrates the potential of CRISPR/Cas9 for treating genetic diseases like Fanconi anemia by directly correcting mutations.
Ø Researchers used CRISPR/Cas9 nuclease and nickase to target and repair the c.456+4A>T mutation in the FANCC gene, which causes Fanconi anemia (FA), in human fibroblasts derived from an FA patient.
Ø Both nuclease and nickase mediated repair of the mutation, restoring normal FANCC gene function, though nickase was more efficient due to preferentially inducing the homology-directed repair pathway.
Ø Genome-wide analyses found no off-target effects, confirming the CRISPR reagents specifically targeted the intended FANCC locus. This provides proof-of-principle that CR
kSORTTM is a non-invasive blood test that uses gene expression analysis to provide an immune risk index score for renal transplant patients. It can help establish risk of graft injury or rejection in a more sensitive way than current monitoring methods like creatinine levels and biopsies. The test has shown high accuracy and correlation with biopsy results in clinical studies, with a sensitivity of 100% and specificity of 96% after excluding indeterminate results. It has the potential to improve monitoring of transplant patients and help target higher risk individuals for closer surveillance.
This study evaluated novel human recombinant anti-HER2/neu antibodies in different cancer cell lines. Three specific and high affinity single-chain fragment variable (scFv) antibodies against HER2 were selected from a human antibody library and found to inhibit the growth of HER2-overexpressing breast cancer cell lines. The scFvs reduced HER2 expression at both the gene and protein levels and a combination of the three scFvs was more effective than individual scFvs. The selected scFvs also down-regulated VEGF and SDF-1 gene expression, suggesting potential as a treatment for cancers that overexpress HER2.
ProImmune Antigen Characterization Summit Paul Mossamandacturner
This document summarizes research on the immune response to cytomegalovirus (CMV) and cancer-testis antigens (CTAgs). It discusses how CMV elicits a massive immune response, occupying up to 40% of CD8+ T cells. This response declines with immunosuppression. It also explores using CMV-specific T cells for immunotherapy after stem cell transplantation. The document then examines CTAgs, which are expressed in cancers and elicit anti-tumor immune responses, but challenges remain in understanding their efficacy.
This document discusses oncolytic virus therapies, including their mechanisms of action, preclinical studies, experiences with patients, and future outlook. It provides an overview of deletion mutant oncolytic adenoviruses that selectively replicate in cancer cells. Clinical trials have shown safety and some efficacy of these viruses as monotherapies and in combination with other treatments like radiation or chemotherapy. Oncolytic viruses show promise as a novel cancer treatment approach.
polarized macrophages in choroidal neovascularizationYasuo Yanagi
1) Macrophages play an important role in choroidal neovascularization (CNV) and can have both pro-angiogenic and anti-angiogenic effects. Specifically, classically activated M1 macrophages promote CNV through VEGF expression while alternatively activated M2 macrophages may suppress CNV.
2) Studies in mouse models of CNV show recruitment of inflammatory monocytes and lymphocytes but macrophages, not other immune cells, are crucial for CNV formation. Laser induction of CNV increases inflammatory monocytes in peripheral blood.
3) Sympathetic denervation and beta-3 adrenoreceptor blockade inhibit CNV by decreasing the mobilization of inflammatory monocytes from bone marrow and spleen reservoirs. The spleen appears
The document discusses the role of MIC-A antibodies in renal allograft loss. It presents the case of a patient whose renal function gradually deteriorated, associated with a weakly positive MICA antibody screen. Biopsies showed glomerulopathy and chronic allograft nephropathy. Based on the positive MICA screen, the patient was treated for possible MICA-related rejection with steroids, which reduced their creatinine level. The document then reviews the expression of MICA antigens and their role in activating NK and T cells through NKG2D engagement. It discusses evidence that MICA antibody mismatch can lead to graft loss and the challenges in detecting non-HLA antibodies.
Tumor Mutational Load assessment of FFPE samples using an NGS based assayThermo Fisher Scientific
Understanding the molecular determinants of response to immune checkpoint blockade inhibitors is a critical unmet need for translational oncology research. Research tools to characterize the mutational landscape of cancers may potentially help identify predictive biomarkers for immuno-therapy that can be tested in future studies. Herein, we describe a targeted Ion AmpliSeq assay to determine the mutational load and signature of cancer research samples.
#Mwf2014 workshop1 people, places, things - how to create connections with a...mladly
This document provides an overview of various case studies, methods, and best practices for using social media and digital tools. It summarizes several projects including Twitter's new video tool, Instagram and Vine for sharing short videos, the #FirstWorldProblems hashtag campaign, Google Trends for analyzing search patterns, Google Earth and Cultural Institute for exploring places and culture virtually, Europeana for online exhibitions, the Intel Museum of Me for creating a personal digital archive, and several public art projects using new media. The document is authored by Dr. Martha Ladly and provides her contact information.
Panel discussion- Preferred offshore hubs for IndiansIndia inc
This Presentation is from Panel discussion on Preferred Offshore Hubs For Indians session at the Global Wealth Management Conclave 2014 organised by India Inc - http://www.indiaincorporated.com- on April 7, 2014
Panel discussion - Property v Luxury assets - what should and what will india...India inc
This Presentation is from Panel discussion on Property v Luxury assets - what should and what will indians invest in? session at the Global Wealth Management Conclave 2014 organised by India Inc - http://www.indiaincorporated.com- on April 7, 2014
Listening to, Engaging with and Caring for Customers with Social Storytelling...Energy Digital Summit
This presentation was written by Adam Brown with Salesforce.com. Adam was invited to present as a breakout speaker for the Energy Digital Summit in January 2015.
The document instructs the reader to find their prescribed drug type and write down information about it. It does not provide any details on specific drugs, their uses, side effects, or other essential information. The high-level purpose is to have the reader research and record data about their prescribed medication(s), but important details are missing from the brief instruction.
The document discusses the locations that will be used in an upcoming music video. It describes 6 locations: the music room, studio, dance studio, living room, bedroom, and bathroom. Each location will portray different scenes related to the singer's insecurities in her relationship and her boyfriend making her feel insecure. The scenes will use various shots and lighting will be adjusted to create a sense of dullness and gloominess to complement the theme of insecurity in the song.
Field trips provide benefits beyond standardized test scores by exposing students to subjects like science, history, and the arts. They can develop students' appreciation of the arts through performances and build background knowledge and vocabulary. However, field trips are costly and require significant planning. To fund and justify field trips, teachers cite curriculum standards and administrators seek community support through grants and parent organizations. Overall, well-planned field trips that utilize community resources can enhance students' educational experiences when integrated into the curriculum.
Results Rule: How to Sell Anything to Anyone in Oil & Gas - James Hahn [Energ...Energy Digital Summit
This presentation was written by James Hahn, CEO of Tribe Rocket. James was invited to present as a breakout speaker for the inaugural Energy Digital Summit in June 2014.
The document discusses Agile software development. It provides information on what Agile development is, the main phases (requirements planning, design workshop, implementation), and that the process can repeat until customer satisfaction. It notes Agile development allows for rapid development, involvement of customers, and uses tools and teamwork. Benefits include improved quality, opportunities for corrections, customer satisfaction, and faster time to market. However, disadvantages include needing active user involvement throughout and new requirements potentially arising during development.
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Evan Shegog Slide Presentation Sigma Xi Research Showcase 2014
1. VEGFR2 Specific Delivery of Multistage Nanovectors:
A nanomedicine-based approach to treat cancer by targeting blood vessel formation
This work was conducted at the Houston Methodist Hospital Research Institute,
Department of Nanomedicine, Houston, Texas
2. Introduction
Cancer Therapy
Cancer causes the of death of over 500,000 Americans every
year.
VEGF
VEGFR2 Receptor
A promising approach for the treatment of cancer is preventing
angiogenesis (the formation of new blood vessels) that supports
tumor growth.1
When VEGF (Vascular Endothelial Growth Factor) binds to its
receptor (VEGFR2) on endothelial cells, a complex signaling
cascade starts, resulting in angiogenesis.
Therapeutic antibodies against VEGF or VEGFR2 prevent
angiogenesis and are currently used for cancer treatment.2
These treatments have limited success however, since only a
small percentage of the antibodies reach their target because of
degradation and other biological barriers.3
Angiogenesis
1. Kim, K.J., et al., 1993; 2. Ferrara, N. et al., 2004; 3. Crawford, Y. et al. 2009.
3. Nanomedicine
Nanoparticles represent a new way of delivering
therapeutic agents to tumors and to blood vessels
around tumors.
A next-generation nanoparticle that was produced
at our Institute is called Multistage Nanovector (MSV).1
These MSV, with their special physical and chemical
properties, are designed to avoid biological barriers and
therefore, successfully deliver therapeutic agents to cells.2
Tasciotti , E. et al. 2008
The diagram shows intravenously injected MSV
(grey disks) that efficiently move to the
endothelial cells of the target tissue by avoiding
biological barriers and entrapment.
1. Tasciotti , E. et al. 2008; 2. Martinez, J. et al., 2013
4. Purpose
To use the unique properties of MSV, together with the
powerful targeting potential of VEGFR2, in order to
develop a specific and efficient transport system for
VEGFR2 antibodies to blood vessels.
Importance
If successful, this research will improve the delivery of
therapeutic antibodies that prevent angiogenesis and hence
tumor growth.
Diagram of VEGFR2 mediated targeting of MSV
to endothelial cells of a blood vessel at a tumor site
Approach
Preparation of MSV conjugated with anti-VEGFR2 antibodies (VEGFR2-MSV) and then the use of
these particles to target the VEGFR2 receptor of an endothelial cell line (PAEC) in vitro.
5. Methods: Overview
1.
Preparation and characterization of VEGFR2 antibody
conjugated MSV (VEGFR2-MSV)
2.
Preparation and characterization of VEGFR2
expressing endothelial cells
3.
In vitro targeting of VEGFR2 on endothelial cells by
VEGFR2-MSV
a.) Static conditions (MSV added to cells and incubated)
b.) Dynamic flow conditions (MSV continuously flowed over
the cells at 100 µL/min to mimic the force of blood flow
4.
Internalization of VEGFR2-MSV by endothelial cells
6. Methods:
1.
Detailed
Preparation and characterization of VEGFR2-MSV
Porous silicon micro-particles (3.2 µm in size, with 15 nm pores) were
modified with APTES, functionalized with SMCC, conjugated with
anti-VEGFR2 antibody and labeled with fluorescent dye (Figure 1).
Stabilities of the colloidal solutions of MSV were determined by
measuring Zeta potentials at each step of the conjugation process with
a Malvern Zetasizer instrument (Table 1).
The MSV particles were labeled with a Cy5 fluorescence dye (purple).
VEGFR2 antibodies were labeled with TRITC fluorescence dye (red).
Imaging was done with a Nikon fluorescence microscope (Figure 2).
7. Methods:
2.
Detailed (continued)
Preparation and characterization of VEGFR2 expressing endothelial cells
Porcine aortic endothelial cells (PAEC) were transfected with genes for:
human VEGFR2, neomycin resistance, and yellow fluorescent protein
(YFP). PAEC clones expressing VEGFR2 were selected with G418 to
choose the cells with high VEGFR2 expression.
Western blot analysis was used to determine VEGFR2 protein expression
in PAEC after transfection with the VEGFR2 gene (Figure 3). PAEC
were imaged with a Nikon fluorescence microscope (Figure 4).
8. Methods:
3.
Detailed (continued)
In vitro targeting of VEGFR2 on endothelial cells by VEGFR2-MSV
PAEC (wild-type or expressing VEGFR2) grown on culture slides were
incubated with MSV (with or without VEGFR2 antibody) and analyzed at 15
and 60 minutes. Cell nuclei were labeled with DAPI (blue); VEGFR2 on PAEC
with YFP (green); MSV with AlexaFluor 647(red). The fluorescent intensities
of imaged cells were analyzed with Nikon Elements. (Figure 5).
For dynamic flow experiments, cells were grown on slides in an induction
chamber set at 37 C and 5% CO2 and were flowed with 3x107 MSV at 100
uL/min for 30 min (with or without VEGFR2 antibody). MSV were labeled
with AlexaFluor 647 (red). Cells were continuously imaged using time-lapse
microscopy, merging transmitted light and fluorescence (Figure 6).
9. Methods:
4.
Detailed (continued)
Internalization of VEGFR2-MSV by endothelial cells
PAEC (wild-type or expressing VEGFR2) were grown on culture slides and
incubated with VEGFR2-MSV. Cytoskeleton (α -tubulin) was labeled with
FITC and VEGFR2-MSV were labeled with AlexaFluor 647. Cells were
imaged with a Nikon fluorescence microscope (Figure 7).
10. Results
1. Preparation and characterization of VEGFR2-MSV
Figure 1: Conjugation of VEGFR2 antibody to MSV
Tasciotti et al., 2008
11. Table 1: Zeta potential of MSV
Nanovectors
Zeta potential
measurements
1
Oxidized MSV
APTES-modified MSV
SMCC-modified MSV
VEGFR2-MSV
2
3
Zeta
potential
(average)
-23.10 -23.50 -23.20 -23.27 + 0.21*
5.59
6.26
5.50 + 0.81
-9.95 -7.27
-7.94
-8.39 + 1.39
4.65
-28.80 -30.00 -30.20 -29.67 + 0.76
*Triplicate measurements with calculated averages
Zeta potential, a measure of the surface charge of particles, was used to determine the
stability of solutions of nanoparticles.
Results show:
The VEGFR2-MSV had the most negative Zeta potentials, indicating greatest stability
because repulsive forces between negative charges keep particles dispersed in solution.
These results were proof of successful conjugation and good stability of colloidal solutions
of VEGFR2-MSV.
12. Figure 2: Fluorescent microscopy of MSV with and without the VEGFR2 antibody
MSV without VEGFR2 antibody
Bright field
MSV
MSV with VEGFR2 antibody
ANTIBODY
Bright field
MSV
ANTIBODY
MSV were labeled with Cy5 (purple) and VEGFR2 antibodies were labeled with TRITC (red). Imaging was
done using a Nikon fluorescence microscope.
Results show:
Proof of conjugation of the VEGFR2 antibody to the MSV is seen by the red fluorescence signal of the
conjugated particle.
13. 2. Preparation and Characterization of VEGFR2 Expressing Endothelial Cells
Figure 3: Western blot of VEGFR2 protein expression in PAEC clones
Porcine aortic endothelial cells (PAEC) were transfected with: humanVEGFR-2, neomycin
resistance and yellow fluorescent protein (YFP) genes. PAEC clones were selected with G418.
Figure shows western blot analysis of VEGFR2 protein. Positive control: HUVEC cells; negative
control: 4T1GFP and wild-type (WT) PAEC; protein loading control: β-actin.
Results show:
PAEC clones expressed the human VEGFR2 protein. Clones 20 & 23 were used in subsequent
experiments.
14. Figure 4: Fluorescence microscopy of VEGFR2
transfected PAEC
1
1.
2.
3.
4.
Cell nuclei labeled with DAPI nucleic acid stain (blue).
VEGFR2 on PAEC labeled with YFP (green)
VEGFR2 antibody labeled with TRITC (red)
Merged images
Results show:
2
PAEC transfected with the VEGFR2 gene expressed the
receptor on the cell surface (2).
VEGFR2 was recognized by the VEGFR2 antibody (3).
3
The receptor and antibody co-localized on the cell surface
(4) indicating that the VEGFR2 was functional and the
VEGFR2 antibody worked.
4
15. 3 In vitro targeting of VEGFR2 on endothelial cells by VEGFR2-MSV
Figure 5: In vitro targeting of VEGFR2 on PAEC by VEGFR2-MSV: Static conditions
A
VEGFR2 expressing PAEC clones
B
MSV without antibody
Intensity/# of cells
MSV without antibody
Wild-type PAEC
15
10
WT
5
Clone
0
15
60
C
D
Intensity/# of cells
MSV with antibody
Time (min)
18
16
14
12
10
8
6
4
2
0
MSV with antibody
WT
Clone
15
60
Time (min)
Results show:
PAEC incubated with MSV without VEGFR2 antibody, showed no difference in the MSV bound to wild-type (A) and VEGFR2
expressing PAEC (B), indicating minimal non-specific adherence to control cells. Graphs show intensity of fluorescence at two time
points (15 and 60 mins).
PAEC incubated with MSV, with VEGFR2 antibody, showed significantly more MSV bound to VEGFR2 expressing PAEC (D)
compared to wild-type (C), as measured by the intensity of the red dye, indicating specific targeting of VEGFR2 at 15 and 60 mins.
The data show in vitro targeting of VEGFR2 on PAEC by VEGFR2-MSV.
16. Figure 6: In vitro targeting of VEGFR2 on PAEC by VEGFR2-MSV: dynamic flow conditions
B
MSV without antibody
Intensity/mm2
A
VEGFR2 expressing PAEC clones
C
1.6
0.6
-0.4
WT
0
10
20
30
Clone
Time (min)
D
MSV with antibody
Intensity/mm2
MSV with antibody
MSV without antibody
Wild-type PAEC
1.6
0.6
-0.4
WT
0
10
20
30
Clone
Time (min)
Results show:
PAEC incubated with MSV, without VEGFR2 antibody, showed no difference in the MSV bound to wild-type (A) and VEGFR2
expressing PAEC (B) indicating minimal non-specific adherence to control cells. Graphs show time course (0 to 30 min) of intensity
of fluorescence.
PAEC incubated with MSV, with VEGFR2 antibody, showed significantly more MSV bound to VEGFR2 expressing PAEC (D)
compared to wild-type (C), after 20 min, as measured by the intensity of the red dye, indicating specific targeting of VEGFR2.
The data show in vitro targeting of VEGFR2 by VEGFR2-MSV, under dynamic flow conditions that mimic blood flow.
17. 4.
Cellular Internalization of VEGFR2-MSV by PAEC
Wild-type PAEC
A
VEGFR2 expressing PAEC clones
B
Results show:
VEGFR2-MSV (AlexaFluor 647, red) co-localized with the cytoskeleton (TRITC, blue) of PAEC (B).
The data show that VEGFR2-MSV were not only targeted to cell surface receptors, but were also
internalized by the cells, suggesting that the VEGFR2 antibody will have a potential therapeutic effect
in preventing angiogenesis.
18. Summary
The results shows that MSV conjugated with VEGFR2 antibodies bind to the
VEGFR2 of endothelial cells in vitro and deliver the therapeutic antibodies to
their target in a specific manner.
VEGFR2-MSV mediated targeting was also demonstrated under dynamic flow
conditions that mimicked the flow of blood in blood vessels.
VEGFR2-MSV mediated targeting resulted in internalization of the particles.
19. Conclusions
Multistage nanovector mediated targeting of the VEGF receptor on endothelial
cells is a promising technology for specific and efficient delivery of antibodies
that can prevent angiogenesis around tumors and therefore, may have important
clinical applications for cancer therapy.
As a first step toward this goal, in this study, we established an in vitro
system to test the targeting of VEGFR2-MSV to endothelial cells.
20. Future Directions
Experiments underway:
Quantitative analyses of VEGFR-2 expression in PAEC
Quantitative analyses of VEGFR2-MSV targeting to PAEC
Cell viability and toxicity studies designed to test the safety of
VEGFR2-MSV targeting.
In vivo studies to validate our in vitro experiments. Mice, with
tumors, will be injected with VEGFRR2-MSV and live imaging of
the animals will be performed to examine in vivo targeting.
21. Future Directions
Long-term goals:
MSV will be loaded with anti-cancer drugs that will be
released from the pores of the MSV at the target tissue.
This system will have the dual function of preventing
angiogenesis with the VEGFR2 antibody on its surface
and directly destroying cancer cells with the drugs
inside it.
Tumor
Multistage nanovector
Stage 1 particle
Stage 2 particle
VEGFR2
Antibody to VEGFR2
VEGF
Endothelial cell lined blood vessel
No Angiogenesis
+
Drug Delivery
22. References
•
Blanco, E., Hsiao, A., Ruiz-Esparza, G.U., Landry, M.G., Meric-Bernstam, F. and Ferrari, M. Moleculartargeted nanotherapies in cancer: Enabling treatment specificity. Molec. Oncol., 5:6 (2011), pp. 492–503.
•
Carmeliet. Angiogenesis in health and disease Nat. Med., 9 (2003), pp. 653–66.
•
Crawford, Y. and Ferrara, N. Tumor and stromal pathways mediating refractoriness/resistance to antiangiogenic therapies. Trends Pharmacol. Sci., 30 (2009), pp. 624–630.
•
Ferrara, N., Hillan, K.J., Gerber, H.P., Novotny, W. Discovery and development of bevacizumab, an antiVEGF antibody for treating cancer. Nat. Rev. Drug Discov.(2004) 391-400.
•
Ferrari, M. Cancer nanotechnology: opportunities and challenges. Nat. Rev. Cancer, 5 (2005), pp. 161–
171.
•
Kim, K.J., Li, B., Winer, J., Armanini, M., Gillett, N., Phillips, H.S. and Ferrara, N. Inhibition of vascular
endothelial growth factor-induced angiogenesis suppresses tumor growth in vivo. Nature 362, (1993), pp.
841 – 844; doi:10.1038/362841a0.
•
Martinez, J.O., Chiappini, C., Ziemys A., Faust, A.M., Kojic, M., Liu, X., Ferrari, M. and Tasciotti E.
Engineering multi-stage nanovectors for controlled degradation and tunable release kinetics.
Biomaterials, 34(33) (2013) pp. 8469-77. doi: 10.1016/j.biomaterials.2013.07.049. Epub 2013 Jul 30.
•
Tasciotti, E., Liu, X., Bhavane, R., Plant, K., Leonard, A.D., Price, B.K., Cheng, M.M., Decuzzi, P., T
our, J.M., Robertson, F. and Ferrari, M. Mesoporous silicon particles as a multistage delivery system for
imaging and therapeutic applications. Nat. Nanotechnol., 3 (2008), pp. 151–157.
23. Acknowledgements
I would like to thank:
Dr. Ennio Tasciotti, my research mentor, for giving me the opportunity to work in
his laboratory.
Jonathan O. Martinez (graduate student) for guiding my work every step of the way.
Vivek Karun (undergraduate student) for helping me with many experiments.
Joshua Wang (high school student) for collaborating on many experiments.
This study was supported by Dr. Ennio Tasciotti‘s research grants.