Scientists have made advances in understanding how genomes are regulated as DNA is converted to RNA inside cells. By combining new sequencing technologies with biochemical techniques, researchers examined how nucleosomes and histone proteins control transcription of DNA to RNA in baker's yeast. Separately, a study shed light on riboswitches, stretches of RNA that act as on/off switches to regulate gene expression in response to cellular metabolites. These findings provide insights into fundamental gene regulation processes and could aid in developing new antibiotics.
CRISPR system is very simple, consisted of a Cas9 protein and a single guided RNA. With the guidance of sgRNA, Cas9 could cause a double stranded breaks in the target site.
CRISPR system is very simple, consisted of a Cas9 protein and a single guided RNA. With the guidance of sgRNA, Cas9 could cause a double stranded breaks in the target site.
DNA replication is a semiconservative process. It means that each strand acts as a template for the synthesis of a new complementary strand. Therefore, this process takes us from one parent molecule to two daughter molecules, with each newly formed double helix containing one new and one old strand.
RNA editing (also RNA modification) is a molecular process through which some cells can make discrete changes to specific nucleotide sequences within an RNA molecule after it has been generated by RNA polymerase.
It occurs in all organisms and is one of the
most evolutionarily conserved properties of RNAs.
RNA editing may include the
insertion, deletion, and base substitution
of nucleotides within the RNA molecule.
RNA editing is relatively rare and
can affect the stability of RNAs and
has been linked with human diseases.
A MILESTONE OF THE DISCOVERY OF RNA EDITING
1. SITE-SPECIFIC DEAMINATION EDITING
A(adenosine) to I(inosine) double-stranded mechanism
occurs in viruses, humans
C(cytidine) to U(uridine) and U to C
occurs in the chloroplast, plant mitochondria, and human genes.
2. GUIDE RNA-MEDIATED SITE-SPECIFIC INSERTION AND DELETION OF URIDINEU insertion /deletion
Occurs in Kinetoplasts(networks of circular DNA molecules present in mitochondria)
Guide RNA mediated site-specific insertion and deletion of uridine
Guide RNA: It is part of degraded introns.
It is a small fraction of the RNA sequence
That just comes out of the splicing of RNA.
Guide RNA guide the process of RNA editing
In eukaryotes, that's why called guide RNA.
Step by Step mechanism
Cleavage of RNA with endonuclease
Activity of TuTase and addition of uridine
Ligation of nick using ligase
FUNCTIONS OF RNA EDITING
RECENT RESEARCH ON RNA EDITING
Three mammalian ADAR genes (ADAR1–3) with common functional domains have been identified.
Deficiencies in the A→I RNA editing mechanism cause human diseases and pathophysiology.
RNA editing is a major mechanism, although reported exclusively in Eukaryotes.
RNA editing has been reported in Protozoa, plants, and mammals, nuclear, mitochondrial, chloroplast, and viral RNAs; mRNA, tRNA, and rRNA and not yet fungi or prokaryotes;
Researchers are now exploring a form of editing in prokaryotes and certain viruses.
A method has been developed by researchers for seeing the RNA editing procedure in real-time, the repaired strand emits green light, and even for the confirmation of repair mechanisms.
However, researches are still ongoing to elucidate key mechanisms of editing in various organisms.
Major strengths and weakness of RNA Editing
RE has been integrated into biological networks
Gene expression,
RNA editing better than DNA editing.
RNA editing is therefore considered to be less risky.
How RE activity is globally regulated is unknown.
Many editing sites in human transcriptomes remain to be discovered.
Monitoring of the global activity of RE in-vivo is rare.
Future perspectives of RNA Editing
Description of physiological significance of particular editing events identified in tumor, neuronal tissues and brain or other specialized organ.
Molecular mechanisms on how RE affect the expression or functions of many genes through the alteration of codon, splice pattern, stability or localization of protein coding tr
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Scientists view genome as it turns on and[1]
1. Scientists View Genome as It Turns on and Off Inside Cells and Light Shed on RNA 'on/Off Switches' SILVANA ZAPATA MADRID MOLECULAR BIOLOGY MEDICINE STUDENT III SEMESTER UPB
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4. INTRODUCTION biochemical techniques with new, fast DNA-sequencing technology and advanced computer technology are using for know how a cell converts DNA into RNA . Structural and Molecular Biology recently discovered RNA "riboswitches" are capable of more complex functions than originally thought the study may have implications for designing new antibiotics against harmful bacteria.
6. Scientists View Genome as It Turns on and Off Inside Cells By combining biochemical techniques with new, fast DNA-sequencing technology examine with unprecedented resolution how a cell converts DNA into RNA. The main way the genome is "read" in a cell is through its transcription into RNA "The genome is the hard drive of the cell" majority of DNA is transcribed. Much of the product is still considered "junk RNA" -- simply a byproduct of the process.
7. Scientists View Genome as It Turns on and Off Inside Cells The research focused on DNA transcription in baker's yeast. Nucleosomes are grape-like structures formed by strands of DNA wrapped like vines around histone proteins, and serve to organize enormously long DNA molecules. Histone proteins retain a history of what has happened recently in that part of the gene code and a "plan" for what should happen in the future.
8. Scientists View Genome as It Turns on and Off Inside Cells Polymerase comes in direct contact with the histone proteins during the transcription process. The nucleosomes acted as a speed bump for the polymerase enzyme as it moved along the genome transcribing DNA into RNA The organization of histone marks controlled whether "junk RNA" was produced from a given region of DNA.
9. OBSERVATION I think we should do more research on how genes are activated and the process from this search for a technique to resolve errors that may be committed in the transcript.
10. Light Shed on RNA 'on/Off Switches'ScienceDaily (Feb. 14, 2011)
11. Light Shed on RNA 'on/Off Switches' riboswitches are short stretches of RNA that reside within the messenger RNAs of proteins involved in a cell's metabolism. This particular riboswitch resides in the messenger RNA that carries instructions for the enzyme responsible for the production of glucosamine-6-phosphate, called GlmS. when glucosamine-6-phosphate concentrations are low, the glmSriboswitch does not self-destruct, keeping the messenger RNA functioning
12. Light Shed on RNA 'on/Off Switches When a particular protein is needed by the cell, the corresponding gene, made of DNA, is turned "on," or transcribed into a messenger RNA, which then carries the "protein recipe" to the protein-making machinery of the cell. Riboswitchesare short stretches of RNA that reside within the messenger RNAs of proteins involved in a cell's metabolism. Riboswitchcan incorporate signals from many metabolites at once.
13. Light Shed on RNA 'on/Off Switches Binding glucosamine-6-phosphate induces self-destruction of the riboswitch and turns the glmS gene off. Are the new shapes act to prevent the transcription of messenger RNA or translation of messenger RNA into protein. Riboswitcheshave not yet been found in humans
14. observation I think it is very important to study riboswitchest in humans in order to have more developments in the area of pharmacology with antibiotics.
16. MEDICAL UTILITYScientists View Genome as It Turns on and Off Inside Cells The advance enables researchers to make sense of the vast amounts of data generated by the Human Genome Project and the multiple genome sequencing efforts worldwide, while providing new tools for studying basic processes like the reprogramming of stem cells
17. MEDICAL UTILITY Light Shed on RNA 'on/Off Switches Riboswitchesso far have been found primarily in bacteria, the study may have implications for designing new antibiotics against harmful bacteria.
18. MEDICAL UTILITY Scientists View Genome as It Turns on and Light Shed on RNA 'on/Off Switches The splicing are associated with the molecular pathology of a large number of human diseases. At the same time, manipulation of pre-mRNA splicing provides opportunities for therapeutic intervention. Has great importance in the process of creation of new antibiotics and the human genome project.
19. bibliograpy MARTINES S., Lina María. Biología Molecular. 6.ed. Medellín : UPB, 2011. 111p. Scientists View Genome as It Turns on and Off Inside Cells. [ en línea ]. <Disponiblehttp://www.sciencedaily.com/releases/2011/01/110119141723.htm Light Shed on RNA 'on/Off Switches‘. [ en línea]. <Disponible http://www.sciencedaily.com/releases/2011/02/110213162729.htm