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Report from the International Scientific Advisory Committee
John Burn
HVP4, UNESCO,
Paris, 11-15 June 2012
An online reference database which will
provide free access to all variants which have
been assessed and their functional
significance validated
www.thehumanvariomeproject.org
LOVD
Nat Genet, 2007. 39(4): p. 433-6
4@variomeproj
#HVP6
Membership (Voting)
Sir John Burn (co-Chair) National Institute of Health Research UK
Garry Cutting (co-Chair) Johns Hopkins School of Medicine USA
Raymond Dalgleish University of Leicester UK
Jordan Lerner-Ellis Mount Sinai Hospital Canada
Finlay Macrae The Royal Melbourne Hospital Australia
Ming Qi Zhejiang University Medical School China
Raj Ramesar University of Cape Town South Africa
Juergen Reichardt James Cook University Australia
Peter Taschner Leiden University Medical Center The Netherlands
Mauno Vihinen Lund University Sweden
Michael Watson American College of Medical Genetics and Genomics USA
Martina Witsch-Baumgartner Medizinische Universität Innsbruck Austria
5@variomeproj
#HVP6
Membership (Non-Voting)
Arleen Auerbach The Rockefeller University USA
Qasim Ayub Wellcome Trust Sanger Institute UK
Mireille Claustres IURC, Institut Universitaire Clinical Research France
Collet Dandara University of Cape Town South Africa
Johan T. den Dunnen Leiden University Medical Center The Netherlands
Mona El-Ruby National Research Centre Egypt
Aída Falcón de Vargas Venezuelan Central University Venezuela
Marc Greenblatt (HGVS President) University of Vermont USA
Ada Hamosh McKusick-Nathans Institute for Genetic Medicine USA
Helena Kääriäinen (IFHGS President) National Institute for Health and Welfare Finland
Dhavendra Kumar University Hospital of Wales UK
Rita Inés Noher de Halac National University of Cordoba Argentina
Heidi Rehm Harvard Medical School USA
Augusto Rojas Martínez Universidad Autónoma de Nuevo León Mexico
Katsushi Tokunaga University of Tokyo Japan
Thomas Weber Dept. Veterans Affairs New York Harbor Healthcare System USA
Ingrid Winship University of Melbourne Australia
6
Accountabilities
• Providing strategic scientific direction
to the Human Variome Project
Consortium
• Approving the publications of HVP
Standards and Guidelines
• Chartering Working Groups to work on
issues that are not primarily of
concerns to gene/disease specific
databases or HVP Country Nodes
• Authorising the creation of new
Project-Wide Initiatives
• Making HVP Recommendations
• Making Statements on behalf of the
Human Variome Project Consortium
Domains
• Standards Development Process
• HVP Standards and Guidelines
• HVP Recommendations
• Statements on behalf of the Human
Variome Project Consortium
• Membership requirements of
Consortium member classes
@variomeproj
#HVP6
Remit
Purpose
Provide advice and consent on the scientific aspects of the activities
of the Human Variome Project
Functional classification of JDW SNPs
SNP Type Known SNPs Novel SNPs
Missense 8967 2421
Nonsense 44 5
Synonymous 9121 2261
UTR 18517 7102
Intron 922048 381924
10@variomeproj
#HVP6
11
• standards &
nomenclature
• Facilitate
• Support..integration
• Research…variome
• Strengthen capacity
• Sharing...equitable...
.sustainable
@variomeproj
#HVP6
BRCA Challenge & GG2020
Mike Fin Garry John Dick

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Report from the International Scientific Advisory Committee - John Burn

  • 1. Report from the International Scientific Advisory Committee John Burn
  • 3. An online reference database which will provide free access to all variants which have been assessed and their functional significance validated www.thehumanvariomeproject.org LOVD Nat Genet, 2007. 39(4): p. 433-6
  • 4. 4@variomeproj #HVP6 Membership (Voting) Sir John Burn (co-Chair) National Institute of Health Research UK Garry Cutting (co-Chair) Johns Hopkins School of Medicine USA Raymond Dalgleish University of Leicester UK Jordan Lerner-Ellis Mount Sinai Hospital Canada Finlay Macrae The Royal Melbourne Hospital Australia Ming Qi Zhejiang University Medical School China Raj Ramesar University of Cape Town South Africa Juergen Reichardt James Cook University Australia Peter Taschner Leiden University Medical Center The Netherlands Mauno Vihinen Lund University Sweden Michael Watson American College of Medical Genetics and Genomics USA Martina Witsch-Baumgartner Medizinische Universität Innsbruck Austria
  • 5. 5@variomeproj #HVP6 Membership (Non-Voting) Arleen Auerbach The Rockefeller University USA Qasim Ayub Wellcome Trust Sanger Institute UK Mireille Claustres IURC, Institut Universitaire Clinical Research France Collet Dandara University of Cape Town South Africa Johan T. den Dunnen Leiden University Medical Center The Netherlands Mona El-Ruby National Research Centre Egypt Aída Falcón de Vargas Venezuelan Central University Venezuela Marc Greenblatt (HGVS President) University of Vermont USA Ada Hamosh McKusick-Nathans Institute for Genetic Medicine USA Helena Kääriäinen (IFHGS President) National Institute for Health and Welfare Finland Dhavendra Kumar University Hospital of Wales UK Rita Inés Noher de Halac National University of Cordoba Argentina Heidi Rehm Harvard Medical School USA Augusto Rojas Martínez Universidad Autónoma de Nuevo León Mexico Katsushi Tokunaga University of Tokyo Japan Thomas Weber Dept. Veterans Affairs New York Harbor Healthcare System USA Ingrid Winship University of Melbourne Australia
  • 6. 6 Accountabilities • Providing strategic scientific direction to the Human Variome Project Consortium • Approving the publications of HVP Standards and Guidelines • Chartering Working Groups to work on issues that are not primarily of concerns to gene/disease specific databases or HVP Country Nodes • Authorising the creation of new Project-Wide Initiatives • Making HVP Recommendations • Making Statements on behalf of the Human Variome Project Consortium Domains • Standards Development Process • HVP Standards and Guidelines • HVP Recommendations • Statements on behalf of the Human Variome Project Consortium • Membership requirements of Consortium member classes @variomeproj #HVP6 Remit Purpose Provide advice and consent on the scientific aspects of the activities of the Human Variome Project
  • 7. Functional classification of JDW SNPs SNP Type Known SNPs Novel SNPs Missense 8967 2421 Nonsense 44 5 Synonymous 9121 2261 UTR 18517 7102 Intron 922048 381924
  • 8.
  • 9.
  • 11. 11 • standards & nomenclature • Facilitate • Support..integration • Research…variome • Strengthen capacity • Sharing...equitable... .sustainable @variomeproj #HVP6 BRCA Challenge & GG2020
  • 12. Mike Fin Garry John Dick