SlideShare a Scribd company logo
1 of 13
Re-collection to assess temporal variation in wild barley
diversity in Jordan
Thormann I, Engels JMM, Börner A, Lohwasser U, Pillen K, Richards CM
1st International Agrobiodiversity Congress, 6-9 November 2016, New Delhi, India
Genetic erosion studies on Crop Wild Relatives
How changes the diversity over time?
Where has crop wild relative diversity
been lost?
What factors drive change and loss?
INTRODUCTION
Germplasm collections as resource
Plenty of germplasm collecting during the past century
Conserved in genebanks around the world
Snapshots
of diversity
Useful as baseline
One example:
Bioversity International
Collecting Database
http://bioversity.github.io/geosite/INTRODUCTION
Bioversity International Collecting Database
Over 220,000 samples collected in over 1000 collecting trips
between 1975 and 2012 (90% collected between 1975-1995)
27% are wild species
25% of trips collected
only wild species
Location data and
mission reports
available
INTRODUCTION http://bioversity.github.io/geosite/
Re-collection of barley in Jordan: 1981 / 2012
METHODS
Verification with Google earth and gazetteers
• 1981 seed samples conserved
in NordGen
• Set of wild barley population
pairs collected from same 18
sites in both years
Data and analyses
METHODS
• Field trial in IPK
• 16 individual plants per
population
• 38 SSRs for genetic diversity,
differentiation and population
structure analyses
• 10 variable phenotypic traits for
assessment of relative changes
in phenotypes
Data and analyses
METHODS
• Trends in temperature and rainfall variables; differences between
collecting time points
• Correlations between climatic, phenotypic and genetic change, and
with geographical variables (latitude and elevation).
VariableYear 1980 1981 … 2012 2013
Annual precipitation
Driest month
Driest quarter
Wettest month
Wettest quarter
Annual mean temp
Hottest month
Hottest quarter
Coldest month
Coldest quarter
• Analogue to Bioclim
variables 1, 5, 6, 10-14,
16, 17
RESULTS
0
0.5
1
1.5
2
2.5
3
7575 7561 7572 7586 7588 7640 7599 7600 7595 7594 7596 7602 7616 7604 7617 7606 7612 7628
Change in annual, quarterly and monthly temperature means between
collecting periods per site
Change annual
temp
Change
warmest
quarter
Change coldest
quarter
Change
warmest
month
change coldest
month
Annual temperature
RESULTS
• Population structure
largely maintained
• Higher genetic diversity
in 2012
(no. of alleles, allelic richness,
no. of multi-locus genotypes)
• Lower differentiation
among populations in 2012
(lower FST, increased genetic
and physical admixture).
RESULTS
• Phenotype variation within and among sites comparable in both collecting
years, confirming high variability observed in other studies
• Relative change in phenotype among collecting years (further field trials)
• No correlations (except change in climate with latitude)
Summary
RESULTS
• Observed pattern of increased diversity, reduced differentiation and
maintenance of phenotypic variation: evidence of an additional
possible response in CWR exposed to a variable and changing
environment.
• Reduced differentiation indicating increased seed dispersal, likely
due to the intensification of agriculture and grazing.
•  include agricultural practices and seed flow in studies on CWR
growing in disturbed habitats and agricultural areas.
• Useful approach to investigate temporal changes in CWR diversity
• Bioversity International Collecting Database: rich source of
baseline data for similar studies.
Acknowledgements, references
• National Center for Agricultural Research and Extension (NCARE), Jordan
• International Center for Agricultural Research in Dry Areas (ICARDA)
• National Center for Genetic Resources Preservation (NCGRP), USDA, USA
• German Federal Genebank, Leibniz Institute of Plant Genetics and Crop Plant
Research (IPK)
• Bioversity International.
Thormann I, Reeves P, Thumm S, Reilley A, JMM Engels, Lohwasser U, Börner A, Pillen K, Richards CM (2016)
Genotypic and phenotypic changes in wild barley (Hordeum vulgare subsp. spontaneum) during a period of
climate change in Jordan. Genetic Resources and Crop Evolution. DOI: 10.1007/s10722-016-0437-5.
Thormann I, Fiorino E, Halewood M, Engels JMM (2015) Plant genetic resources collections and associated
information as baseline resource for genetic diversity studies – an assessment of the IBPGR supported
collections. Genetic Resources and Crop Evolution 62(8):1279-1293.
Thank you
www.bioversityinternational.org/subscribe
@BioversityInt
Imke Thormann
i.thormann@cgiar.org

More Related Content

What's hot

How agroecological intensification relates to key ecosystem services
How agroecological intensification relates to key ecosystem servicesHow agroecological intensification relates to key ecosystem services
How agroecological intensification relates to key ecosystem services
Bioversity International
 
On NOT finding the world's next superfood
On NOT finding the world's next superfoodOn NOT finding the world's next superfood
On NOT finding the world's next superfood
Bioversity International
 
What do we have to lose? Generating crop diversity and threat monitoring info...
What do we have to lose? Generating crop diversity and threat monitoring info...What do we have to lose? Generating crop diversity and threat monitoring info...
What do we have to lose? Generating crop diversity and threat monitoring info...
Bioversity International
 
Introduction to prebreeding component of CWR project
Introduction to prebreeding component of CWR project Introduction to prebreeding component of CWR project
Introduction to prebreeding component of CWR project
CWR Project
 
Cwr at eucarpia
Cwr at eucarpiaCwr at eucarpia
Cwr at eucarpia
cwr_use
 
Sustainable Food Production: Improving Food Security and Human Nutrition in ...
Sustainable Food Production:  Improving Food Security and Human Nutrition in ...Sustainable Food Production:  Improving Food Security and Human Nutrition in ...
Sustainable Food Production: Improving Food Security and Human Nutrition in ...
IFSD14
 
Partnering on CWR research at three scales: commonalities for success
Partnering on CWR research at three scales: commonalities for successPartnering on CWR research at three scales: commonalities for success
Partnering on CWR research at three scales: commonalities for success
CWR Project
 

What's hot (20)

Plant adaptation to climate change - Scott Chapman
Plant adaptation to climate change - Scott ChapmanPlant adaptation to climate change - Scott Chapman
Plant adaptation to climate change - Scott Chapman
 
We Manage What We Measure: An Agrobiodiversity Index to Help Deliver SDGs
We Manage What We Measure: An Agrobiodiversity Index to Help Deliver SDGsWe Manage What We Measure: An Agrobiodiversity Index to Help Deliver SDGs
We Manage What We Measure: An Agrobiodiversity Index to Help Deliver SDGs
 
Bioversity International booklet
Bioversity International bookletBioversity International booklet
Bioversity International booklet
 
How agroecological intensification relates to key ecosystem services
How agroecological intensification relates to key ecosystem servicesHow agroecological intensification relates to key ecosystem services
How agroecological intensification relates to key ecosystem services
 
Celine Termote, Bioversity International "Nutrition and Health Sensitive Land...
Celine Termote, Bioversity International "Nutrition and Health Sensitive Land...Celine Termote, Bioversity International "Nutrition and Health Sensitive Land...
Celine Termote, Bioversity International "Nutrition and Health Sensitive Land...
 
On NOT finding the world's next superfood
On NOT finding the world's next superfoodOn NOT finding the world's next superfood
On NOT finding the world's next superfood
 
What do we have to lose? Generating crop diversity and threat monitoring info...
What do we have to lose? Generating crop diversity and threat monitoring info...What do we have to lose? Generating crop diversity and threat monitoring info...
What do we have to lose? Generating crop diversity and threat monitoring info...
 
Resilient seed systems and Adaptation to climate change
Resilient seed systems and Adaptation to climate changeResilient seed systems and Adaptation to climate change
Resilient seed systems and Adaptation to climate change
 
Introduction to prebreeding component of CWR project
Introduction to prebreeding component of CWR project Introduction to prebreeding component of CWR project
Introduction to prebreeding component of CWR project
 
Traditional management systems of forest based foods
Traditional management systems of forest based foodsTraditional management systems of forest based foods
Traditional management systems of forest based foods
 
National Experiences - Evolutionary Participatory Plant Breeding: using genet...
National Experiences - Evolutionary Participatory Plant Breeding: using genet...National Experiences - Evolutionary Participatory Plant Breeding: using genet...
National Experiences - Evolutionary Participatory Plant Breeding: using genet...
 
Prioritizing Crop Wild Relatives Collecting
Prioritizing Crop Wild Relatives CollectingPrioritizing Crop Wild Relatives Collecting
Prioritizing Crop Wild Relatives Collecting
 
Plant genetic resources and climate change
Plant genetic resources and climate changePlant genetic resources and climate change
Plant genetic resources and climate change
 
Agrobiodiversity for people's livelihoods in central asia
Agrobiodiversity for people's livelihoods in central asiaAgrobiodiversity for people's livelihoods in central asia
Agrobiodiversity for people's livelihoods in central asia
 
Cwr at eucarpia
Cwr at eucarpiaCwr at eucarpia
Cwr at eucarpia
 
The Conservation and Use of Crop Genetic Resources for Food Security
The Conservation and Use of Crop Genetic Resources for Food SecurityThe Conservation and Use of Crop Genetic Resources for Food Security
The Conservation and Use of Crop Genetic Resources for Food Security
 
Conserving crop wild relatives in the United States
Conserving crop wild relatives in the United StatesConserving crop wild relatives in the United States
Conserving crop wild relatives in the United States
 
Forage diversity – an essential resource to support forage development
Forage diversity – an essential resource to support forage developmentForage diversity – an essential resource to support forage development
Forage diversity – an essential resource to support forage development
 
Sustainable Food Production: Improving Food Security and Human Nutrition in ...
Sustainable Food Production:  Improving Food Security and Human Nutrition in ...Sustainable Food Production:  Improving Food Security and Human Nutrition in ...
Sustainable Food Production: Improving Food Security and Human Nutrition in ...
 
Partnering on CWR research at three scales: commonalities for success
Partnering on CWR research at three scales: commonalities for successPartnering on CWR research at three scales: commonalities for success
Partnering on CWR research at three scales: commonalities for success
 

Viewers also liked

Use of Agrobiodiversity for Pest and Disease Management
Use of Agrobiodiversity for Pest and Disease ManagementUse of Agrobiodiversity for Pest and Disease Management
Use of Agrobiodiversity for Pest and Disease Management
World Agroforestry (ICRAF)
 

Viewers also liked (8)

Agrobiodiversity and climate change: a new role for science
Agrobiodiversity and climate change: a new role for scienceAgrobiodiversity and climate change: a new role for science
Agrobiodiversity and climate change: a new role for science
 
Securing plant genetic resources for perpetuity through cryopreservation
Securing plant genetic resources for perpetuity through cryopreservationSecuring plant genetic resources for perpetuity through cryopreservation
Securing plant genetic resources for perpetuity through cryopreservation
 
African Union Presentation on Nagoya Protocol and Plant Treaty
African Union Presentation on Nagoya Protocol and Plant TreatyAfrican Union Presentation on Nagoya Protocol and Plant Treaty
African Union Presentation on Nagoya Protocol and Plant Treaty
 
Mapping Ecosystem Services to Human well-being - MESH tool demo
Mapping Ecosystem Services to Human well-being - MESH tool demoMapping Ecosystem Services to Human well-being - MESH tool demo
Mapping Ecosystem Services to Human well-being - MESH tool demo
 
Without safeguarding trees, one can't safeguard the forest - Soutenir les Arb...
Without safeguarding trees, one can't safeguard the forest - Soutenir les Arb...Without safeguarding trees, one can't safeguard the forest - Soutenir les Arb...
Without safeguarding trees, one can't safeguard the forest - Soutenir les Arb...
 
Use of Agrobiodiversity for Pest and Disease Management
Use of Agrobiodiversity for Pest and Disease ManagementUse of Agrobiodiversity for Pest and Disease Management
Use of Agrobiodiversity for Pest and Disease Management
 
ABS in Africa and the “Quadruple Win” Goal, SADC Secretariat
ABS in Africa and the “Quadruple Win” Goal, SADC SecretariatABS in Africa and the “Quadruple Win” Goal, SADC Secretariat
ABS in Africa and the “Quadruple Win” Goal, SADC Secretariat
 
Multilateral environmental agreements
Multilateral environmental agreementsMultilateral environmental agreements
Multilateral environmental agreements
 

Similar to Re-collection to assess temporal variation in wild barley diversity in Jordan

Crop plants genetic and genomic resources
Crop plants genetic and genomic resourcesCrop plants genetic and genomic resources
Crop plants genetic and genomic resources
Arun Prabhu Dhanapal
 
Participatory Plant Breeding, Biodiversity, Genetic Resources, Gender and Cli...
Participatory Plant Breeding, Biodiversity, Genetic Resources, Gender and Cli...Participatory Plant Breeding, Biodiversity, Genetic Resources, Gender and Cli...
Participatory Plant Breeding, Biodiversity, Genetic Resources, Gender and Cli...
CIAT
 
Ecogeographical approaches to characterize CWR adaptive traits useful for cro...
Ecogeographical approaches to characterize CWR adaptive traits useful for cro...Ecogeographical approaches to characterize CWR adaptive traits useful for cro...
Ecogeographical approaches to characterize CWR adaptive traits useful for cro...
Txema Iriondo
 
Weed species composition and distribution pattern in the maize crop under the...
Weed species composition and distribution pattern in the maize crop under the...Weed species composition and distribution pattern in the maize crop under the...
Weed species composition and distribution pattern in the maize crop under the...
Shujaul Mulk Khan
 

Similar to Re-collection to assess temporal variation in wild barley diversity in Jordan (20)

Crop wild relatives - looking at trends in genetic diversity to inform conser...
Crop wild relatives - looking at trends in genetic diversity to inform conser...Crop wild relatives - looking at trends in genetic diversity to inform conser...
Crop wild relatives - looking at trends in genetic diversity to inform conser...
 
Conservation and availability of plant genetic diversity
Conservation and availability of plant genetic diversity Conservation and availability of plant genetic diversity
Conservation and availability of plant genetic diversity
 
The role of genetic diversity for building resilience for food security
The role of genetic diversity for building resilience for food securityThe role of genetic diversity for building resilience for food security
The role of genetic diversity for building resilience for food security
 
Crop plants genetic and genomic resources
Crop plants genetic and genomic resourcesCrop plants genetic and genomic resources
Crop plants genetic and genomic resources
 
Participatory Plant Breeding, Biodiversity, Genetic Resources, Gender and Cli...
Participatory Plant Breeding, Biodiversity, Genetic Resources, Gender and Cli...Participatory Plant Breeding, Biodiversity, Genetic Resources, Gender and Cli...
Participatory Plant Breeding, Biodiversity, Genetic Resources, Gender and Cli...
 
B4FA 2012 Tanzania: Genetics, plant breeding and agriculture - Tina Barsby
B4FA 2012 Tanzania: Genetics, plant breeding and agriculture - Tina BarsbyB4FA 2012 Tanzania: Genetics, plant breeding and agriculture - Tina Barsby
B4FA 2012 Tanzania: Genetics, plant breeding and agriculture - Tina Barsby
 
Nuts & Bolts: Genetically Appropriate Choices for Plant Materials to Maintain...
Nuts & Bolts: Genetically Appropriate Choices for Plant Materials to Maintain...Nuts & Bolts: Genetically Appropriate Choices for Plant Materials to Maintain...
Nuts & Bolts: Genetically Appropriate Choices for Plant Materials to Maintain...
 
Fish biodiversity and food supply: Species numbers in the wild and exploited;...
Fish biodiversity and food supply: Species numbers in the wild and exploited;...Fish biodiversity and food supply: Species numbers in the wild and exploited;...
Fish biodiversity and food supply: Species numbers in the wild and exploited;...
 
Ecogeographical approaches to characterize CWR adaptive traits useful for cro...
Ecogeographical approaches to characterize CWR adaptive traits useful for cro...Ecogeographical approaches to characterize CWR adaptive traits useful for cro...
Ecogeographical approaches to characterize CWR adaptive traits useful for cro...
 
Pre breeding and crop improvement using cwr and lr
Pre breeding and crop improvement using cwr and lrPre breeding and crop improvement using cwr and lr
Pre breeding and crop improvement using cwr and lr
 
1615 Ecological Intensification - Lessons from SRI from Green Revolution to...
1615   Ecological Intensification - Lessons from SRI from Green Revolution to...1615   Ecological Intensification - Lessons from SRI from Green Revolution to...
1615 Ecological Intensification - Lessons from SRI from Green Revolution to...
 
Genetic Variability, Heritability and Genetic Advance of Kabuli Chickpea (Cic...
Genetic Variability, Heritability and Genetic Advance of Kabuli Chickpea (Cic...Genetic Variability, Heritability and Genetic Advance of Kabuli Chickpea (Cic...
Genetic Variability, Heritability and Genetic Advance of Kabuli Chickpea (Cic...
 
Unlocking the value and use potential of genetic resources
Unlocking the value and use potential of genetic resourcesUnlocking the value and use potential of genetic resources
Unlocking the value and use potential of genetic resources
 
Collection, evaluation and documentation of germplasm
Collection, evaluation and documentation of germplasmCollection, evaluation and documentation of germplasm
Collection, evaluation and documentation of germplasm
 
Genetic Variability, Heritability And Genetic Advance For Vegetable Yield And...
Genetic Variability, Heritability And Genetic Advance For Vegetable Yield And...Genetic Variability, Heritability And Genetic Advance For Vegetable Yield And...
Genetic Variability, Heritability And Genetic Advance For Vegetable Yield And...
 
Day 1_Session3_TRIPS_WASDS_Bioversity summary report and planned activities i...
Day 1_Session3_TRIPS_WASDS_Bioversity summary report and planned activities i...Day 1_Session3_TRIPS_WASDS_Bioversity summary report and planned activities i...
Day 1_Session3_TRIPS_WASDS_Bioversity summary report and planned activities i...
 
Plant genetic resources
Plant genetic resourcesPlant genetic resources
Plant genetic resources
 
Weed species composition and distribution pattern in the maize crop under the...
Weed species composition and distribution pattern in the maize crop under the...Weed species composition and distribution pattern in the maize crop under the...
Weed species composition and distribution pattern in the maize crop under the...
 
Storage Characteristics of Native Hawaiian Seeds
Storage Characteristics of Native Hawaiian SeedsStorage Characteristics of Native Hawaiian Seeds
Storage Characteristics of Native Hawaiian Seeds
 
The Crop Ontology: a resource for enabling access to breeders’ data
The Crop Ontology: a resource for enabling access to breeders’ data The Crop Ontology: a resource for enabling access to breeders’ data
The Crop Ontology: a resource for enabling access to breeders’ data
 

More from Bioversity International

More from Bioversity International (13)

Improving Planetary and Human Health with Agricultural Biodiversity
Improving Planetary and Human Health with Agricultural Biodiversity Improving Planetary and Human Health with Agricultural Biodiversity
Improving Planetary and Human Health with Agricultural Biodiversity
 
Bringing back millets for human health and the planet's health
Bringing back millets for human health and the planet's healthBringing back millets for human health and the planet's health
Bringing back millets for human health and the planet's health
 
Feedback on survey results
Feedback on survey resultsFeedback on survey results
Feedback on survey results
 
Overview of International Treaty on Plant Genetic Resources for Food and Agri...
Overview of International Treaty on Plant Genetic Resources for Food and Agri...Overview of International Treaty on Plant Genetic Resources for Food and Agri...
Overview of International Treaty on Plant Genetic Resources for Food and Agri...
 
Funding opportunities for the implementation of the Plant Treaty and the Nago...
Funding opportunities for the implementation of the Plant Treaty and the Nago...Funding opportunities for the implementation of the Plant Treaty and the Nago...
Funding opportunities for the implementation of the Plant Treaty and the Nago...
 
Accessing and Using Genetic Diversity for Climate Change Adaptation
Accessing and Using Genetic Diversity for Climate Change AdaptationAccessing and Using Genetic Diversity for Climate Change Adaptation
Accessing and Using Genetic Diversity for Climate Change Adaptation
 
The Nagoya Protocol on Access to Genetic Resources and the Fair and Equitable...
The Nagoya Protocol on Access to Genetic Resources and the Fair and Equitable...The Nagoya Protocol on Access to Genetic Resources and the Fair and Equitable...
The Nagoya Protocol on Access to Genetic Resources and the Fair and Equitable...
 
Implementation of the Nagoya Protocol on ABS and the ITPGRFA: An AU Perspective
Implementation of the Nagoya Protocol on ABS and the ITPGRFA: An AU PerspectiveImplementation of the Nagoya Protocol on ABS and the ITPGRFA: An AU Perspective
Implementation of the Nagoya Protocol on ABS and the ITPGRFA: An AU Perspective
 
The Nagoya Protocol, Poverty Alleviation and Climate Change: Conceptual Linkages
The Nagoya Protocol, Poverty Alleviation and Climate Change: Conceptual LinkagesThe Nagoya Protocol, Poverty Alleviation and Climate Change: Conceptual Linkages
The Nagoya Protocol, Poverty Alleviation and Climate Change: Conceptual Linkages
 
Implementing the multilateral system for development: Highlighting links to t...
Implementing the multilateral system for development:Highlighting links to t...Implementing the multilateral system for development:Highlighting links to t...
Implementing the multilateral system for development: Highlighting links to t...
 
Mapping the dynamic Barotse Floodplain of Zambia
Mapping the dynamic Barotse Floodplain of ZambiaMapping the dynamic Barotse Floodplain of Zambia
Mapping the dynamic Barotse Floodplain of Zambia
 
MESHing ecosystem services – a new tool for policymakers and ecosystem servic...
MESHing ecosystem services – a new tool for policymakers and ecosystem servic...MESHing ecosystem services – a new tool for policymakers and ecosystem servic...
MESHing ecosystem services – a new tool for policymakers and ecosystem servic...
 
In situ conservation of crop wild relatives in the SADC region
In situ conservation of crop wild relatives in the SADC regionIn situ conservation of crop wild relatives in the SADC region
In situ conservation of crop wild relatives in the SADC region
 

Recently uploaded

Module for Grade 9 for Asynchronous/Distance learning
Module for Grade 9 for Asynchronous/Distance learningModule for Grade 9 for Asynchronous/Distance learning
Module for Grade 9 for Asynchronous/Distance learning
levieagacer
 
Human genetics..........................pptx
Human genetics..........................pptxHuman genetics..........................pptx
Human genetics..........................pptx
Cherry
 
Cyathodium bryophyte: morphology, anatomy, reproduction etc.
Cyathodium bryophyte: morphology, anatomy, reproduction etc.Cyathodium bryophyte: morphology, anatomy, reproduction etc.
Cyathodium bryophyte: morphology, anatomy, reproduction etc.
Cherry
 
POGONATUM : morphology, anatomy, reproduction etc.
POGONATUM : morphology, anatomy, reproduction etc.POGONATUM : morphology, anatomy, reproduction etc.
POGONATUM : morphology, anatomy, reproduction etc.
Cherry
 
ONLINE VOTING SYSTEM SE Project for vote
ONLINE VOTING SYSTEM SE Project for voteONLINE VOTING SYSTEM SE Project for vote
ONLINE VOTING SYSTEM SE Project for vote
RaunakRastogi4
 
development of diagnostic enzyme assay to detect leuser virus
development of diagnostic enzyme assay to detect leuser virusdevelopment of diagnostic enzyme assay to detect leuser virus
development of diagnostic enzyme assay to detect leuser virus
NazaninKarimi6
 
LUNULARIA -features, morphology, anatomy ,reproduction etc.
LUNULARIA -features, morphology, anatomy ,reproduction etc.LUNULARIA -features, morphology, anatomy ,reproduction etc.
LUNULARIA -features, morphology, anatomy ,reproduction etc.
Cherry
 
Pteris : features, anatomy, morphology and lifecycle
Pteris : features, anatomy, morphology and lifecyclePteris : features, anatomy, morphology and lifecycle
Pteris : features, anatomy, morphology and lifecycle
Cherry
 
(May 9, 2024) Enhanced Ultrafast Vector Flow Imaging (VFI) Using Multi-Angle ...
(May 9, 2024) Enhanced Ultrafast Vector Flow Imaging (VFI) Using Multi-Angle ...(May 9, 2024) Enhanced Ultrafast Vector Flow Imaging (VFI) Using Multi-Angle ...
(May 9, 2024) Enhanced Ultrafast Vector Flow Imaging (VFI) Using Multi-Angle ...
Scintica Instrumentation
 

Recently uploaded (20)

Module for Grade 9 for Asynchronous/Distance learning
Module for Grade 9 for Asynchronous/Distance learningModule for Grade 9 for Asynchronous/Distance learning
Module for Grade 9 for Asynchronous/Distance learning
 
Efficient spin-up of Earth System Models usingsequence acceleration
Efficient spin-up of Earth System Models usingsequence accelerationEfficient spin-up of Earth System Models usingsequence acceleration
Efficient spin-up of Earth System Models usingsequence acceleration
 
Human genetics..........................pptx
Human genetics..........................pptxHuman genetics..........................pptx
Human genetics..........................pptx
 
Understanding Partial Differential Equations: Types and Solution Methods
Understanding Partial Differential Equations: Types and Solution MethodsUnderstanding Partial Differential Equations: Types and Solution Methods
Understanding Partial Differential Equations: Types and Solution Methods
 
Cyathodium bryophyte: morphology, anatomy, reproduction etc.
Cyathodium bryophyte: morphology, anatomy, reproduction etc.Cyathodium bryophyte: morphology, anatomy, reproduction etc.
Cyathodium bryophyte: morphology, anatomy, reproduction etc.
 
POGONATUM : morphology, anatomy, reproduction etc.
POGONATUM : morphology, anatomy, reproduction etc.POGONATUM : morphology, anatomy, reproduction etc.
POGONATUM : morphology, anatomy, reproduction etc.
 
Taphonomy and Quality of the Fossil Record
Taphonomy and Quality of the  Fossil RecordTaphonomy and Quality of the  Fossil Record
Taphonomy and Quality of the Fossil Record
 
Use of mutants in understanding seedling development.pptx
Use of mutants in understanding seedling development.pptxUse of mutants in understanding seedling development.pptx
Use of mutants in understanding seedling development.pptx
 
Cyanide resistant respiration pathway.pptx
Cyanide resistant respiration pathway.pptxCyanide resistant respiration pathway.pptx
Cyanide resistant respiration pathway.pptx
 
ONLINE VOTING SYSTEM SE Project for vote
ONLINE VOTING SYSTEM SE Project for voteONLINE VOTING SYSTEM SE Project for vote
ONLINE VOTING SYSTEM SE Project for vote
 
GBSN - Microbiology (Unit 5) Concept of isolation
GBSN - Microbiology (Unit 5) Concept of isolationGBSN - Microbiology (Unit 5) Concept of isolation
GBSN - Microbiology (Unit 5) Concept of isolation
 
development of diagnostic enzyme assay to detect leuser virus
development of diagnostic enzyme assay to detect leuser virusdevelopment of diagnostic enzyme assay to detect leuser virus
development of diagnostic enzyme assay to detect leuser virus
 
CURRENT SCENARIO OF POULTRY PRODUCTION IN INDIA
CURRENT SCENARIO OF POULTRY PRODUCTION IN INDIACURRENT SCENARIO OF POULTRY PRODUCTION IN INDIA
CURRENT SCENARIO OF POULTRY PRODUCTION IN INDIA
 
Selaginella: features, morphology ,anatomy and reproduction.
Selaginella: features, morphology ,anatomy and reproduction.Selaginella: features, morphology ,anatomy and reproduction.
Selaginella: features, morphology ,anatomy and reproduction.
 
ABHISHEK ANTIBIOTICS PPT MICROBIOLOGY // USES OF ANTIOBIOTICS TYPES OF ANTIB...
ABHISHEK ANTIBIOTICS PPT MICROBIOLOGY  // USES OF ANTIOBIOTICS TYPES OF ANTIB...ABHISHEK ANTIBIOTICS PPT MICROBIOLOGY  // USES OF ANTIOBIOTICS TYPES OF ANTIB...
ABHISHEK ANTIBIOTICS PPT MICROBIOLOGY // USES OF ANTIOBIOTICS TYPES OF ANTIB...
 
LUNULARIA -features, morphology, anatomy ,reproduction etc.
LUNULARIA -features, morphology, anatomy ,reproduction etc.LUNULARIA -features, morphology, anatomy ,reproduction etc.
LUNULARIA -features, morphology, anatomy ,reproduction etc.
 
Pteris : features, anatomy, morphology and lifecycle
Pteris : features, anatomy, morphology and lifecyclePteris : features, anatomy, morphology and lifecycle
Pteris : features, anatomy, morphology and lifecycle
 
GBSN - Biochemistry (Unit 2) Basic concept of organic chemistry
GBSN - Biochemistry (Unit 2) Basic concept of organic chemistry GBSN - Biochemistry (Unit 2) Basic concept of organic chemistry
GBSN - Biochemistry (Unit 2) Basic concept of organic chemistry
 
FS P2 COMBO MSTA LAST PUSH past exam papers.
FS P2 COMBO MSTA LAST PUSH past exam papers.FS P2 COMBO MSTA LAST PUSH past exam papers.
FS P2 COMBO MSTA LAST PUSH past exam papers.
 
(May 9, 2024) Enhanced Ultrafast Vector Flow Imaging (VFI) Using Multi-Angle ...
(May 9, 2024) Enhanced Ultrafast Vector Flow Imaging (VFI) Using Multi-Angle ...(May 9, 2024) Enhanced Ultrafast Vector Flow Imaging (VFI) Using Multi-Angle ...
(May 9, 2024) Enhanced Ultrafast Vector Flow Imaging (VFI) Using Multi-Angle ...
 

Re-collection to assess temporal variation in wild barley diversity in Jordan

  • 1. Re-collection to assess temporal variation in wild barley diversity in Jordan Thormann I, Engels JMM, Börner A, Lohwasser U, Pillen K, Richards CM 1st International Agrobiodiversity Congress, 6-9 November 2016, New Delhi, India
  • 2. Genetic erosion studies on Crop Wild Relatives How changes the diversity over time? Where has crop wild relative diversity been lost? What factors drive change and loss? INTRODUCTION
  • 3. Germplasm collections as resource Plenty of germplasm collecting during the past century Conserved in genebanks around the world Snapshots of diversity Useful as baseline One example: Bioversity International Collecting Database http://bioversity.github.io/geosite/INTRODUCTION
  • 4. Bioversity International Collecting Database Over 220,000 samples collected in over 1000 collecting trips between 1975 and 2012 (90% collected between 1975-1995) 27% are wild species 25% of trips collected only wild species Location data and mission reports available INTRODUCTION http://bioversity.github.io/geosite/
  • 5. Re-collection of barley in Jordan: 1981 / 2012 METHODS Verification with Google earth and gazetteers • 1981 seed samples conserved in NordGen • Set of wild barley population pairs collected from same 18 sites in both years
  • 6. Data and analyses METHODS • Field trial in IPK • 16 individual plants per population • 38 SSRs for genetic diversity, differentiation and population structure analyses • 10 variable phenotypic traits for assessment of relative changes in phenotypes
  • 7. Data and analyses METHODS • Trends in temperature and rainfall variables; differences between collecting time points • Correlations between climatic, phenotypic and genetic change, and with geographical variables (latitude and elevation). VariableYear 1980 1981 … 2012 2013 Annual precipitation Driest month Driest quarter Wettest month Wettest quarter Annual mean temp Hottest month Hottest quarter Coldest month Coldest quarter • Analogue to Bioclim variables 1, 5, 6, 10-14, 16, 17
  • 8. RESULTS 0 0.5 1 1.5 2 2.5 3 7575 7561 7572 7586 7588 7640 7599 7600 7595 7594 7596 7602 7616 7604 7617 7606 7612 7628 Change in annual, quarterly and monthly temperature means between collecting periods per site Change annual temp Change warmest quarter Change coldest quarter Change warmest month change coldest month Annual temperature
  • 9. RESULTS • Population structure largely maintained • Higher genetic diversity in 2012 (no. of alleles, allelic richness, no. of multi-locus genotypes) • Lower differentiation among populations in 2012 (lower FST, increased genetic and physical admixture).
  • 10. RESULTS • Phenotype variation within and among sites comparable in both collecting years, confirming high variability observed in other studies • Relative change in phenotype among collecting years (further field trials) • No correlations (except change in climate with latitude)
  • 11. Summary RESULTS • Observed pattern of increased diversity, reduced differentiation and maintenance of phenotypic variation: evidence of an additional possible response in CWR exposed to a variable and changing environment. • Reduced differentiation indicating increased seed dispersal, likely due to the intensification of agriculture and grazing. •  include agricultural practices and seed flow in studies on CWR growing in disturbed habitats and agricultural areas. • Useful approach to investigate temporal changes in CWR diversity • Bioversity International Collecting Database: rich source of baseline data for similar studies.
  • 12. Acknowledgements, references • National Center for Agricultural Research and Extension (NCARE), Jordan • International Center for Agricultural Research in Dry Areas (ICARDA) • National Center for Genetic Resources Preservation (NCGRP), USDA, USA • German Federal Genebank, Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) • Bioversity International. Thormann I, Reeves P, Thumm S, Reilley A, JMM Engels, Lohwasser U, Börner A, Pillen K, Richards CM (2016) Genotypic and phenotypic changes in wild barley (Hordeum vulgare subsp. spontaneum) during a period of climate change in Jordan. Genetic Resources and Crop Evolution. DOI: 10.1007/s10722-016-0437-5. Thormann I, Fiorino E, Halewood M, Engels JMM (2015) Plant genetic resources collections and associated information as baseline resource for genetic diversity studies – an assessment of the IBPGR supported collections. Genetic Resources and Crop Evolution 62(8):1279-1293.