SlideShare a Scribd company logo
1 of 8
Development of
diagnostic
enzyme assay to
detect Leuser
virus
By Naz
Introduction
• Leuser Virus also known as the yellow eye disease.
• It has been emerging in South-East Asia in the past few
months..
• 2 emerging strains, strain 1 (wild type), strain 2 (lethal)
• Symptoms: yellow eye, mild flu-like symptoms
however if untreated it can cause a sudden rapid
decline and death.
• Diagnostic ELISA-based blood test.
• ELISA is very expensive and pick up both strains of the
virus, so it can’t distinguish between the two strains.
• The aim of this report is to develop a yellow-eye
diagnostic assay based on enzyme X, and to whether
the assay is a good candidate for full clinical
evaluation.
- Optimisation of assay (pH, temperature, wavelength, incubation
time).
- Determination of clinical cut-offs for the assay, to distinguish
patients infected with strain 2.
Materials and Method
Results
Figure 1- Figure Showing the concentration of enzyme X
against the absorbance.
Known
concentration
(mg/L)
Measured
concentration
(mg/L)
QC1 5 0.620
QC2 2.57 0.342
Quality control measured
concentration (mg/L)
Results
Figure 2- Figure showing the standard curve for patient set A
against the absorbance.
Cut-off
concentration
=0.4
Results
2 X 2 table for cut-off 0.4
Figure 3- Figure showing the standard curve for patient set B
against the absorbance. Bellow the cut-off shows strain 1 (mild)
and above the cut-off shows strain 2 (lethal).
Cut-off
concentration
= 0.4
Strain 1 Strain 2
Positive 21(true +) 2 (false +)
Negative 2 (false - ) 15 (true - )
False
positives = 2
False
negatives= 2
Clinical sensitivity and specificity was calculated:
• 91% sensitivity- The proportion of patients with
the strain 1 were correctly identified by the test.
• 88% specificity- The proportion of patients without
strain 1 (meaning strain 2) were correctly identified
by the test.
Post Test Likelihood
PPV 91%
NPV 88%
Table 2. Post Test Likelihood– Positive and
negative predictive values
• PPV- 91% likelihood of
patients having strain 1.
• NPV- 88% likelihood of
patients not strain 1
• Lower NPV as there was
a lower specificity value
Conclusion
• Low number of false negatives (2) =
High sensitivity
• Low number of false positives (2) =
High specificity
• Clinical sensitivity (91%) and clinical
specificity (88%) confirmed and
validated enzyme assay reliability.
• These results have proven to be
considered for future investigations
and relevant for the development of
enzyme X assay-based diagnostic for
detection of leucer virus.
Limitations
• Low QC values- enzyme X assay
was not accurate
- triplicates, to limit the freeze-thaw
cycles. .

More Related Content

Similar to development of diagnostic enzyme assay to detect leuser virus

3 update onhivtesting
3 update onhivtesting3 update onhivtesting
3 update onhivtesting
ravigakhare
 
01.-Overview-of-RTRI-Principle-and-Performance_April2021.pptx
01.-Overview-of-RTRI-Principle-and-Performance_April2021.pptx01.-Overview-of-RTRI-Principle-and-Performance_April2021.pptx
01.-Overview-of-RTRI-Principle-and-Performance_April2021.pptx
SuriaKumar4
 
Epidemiological Approaches for Evaluation of diagnostic tests.pptx
Epidemiological Approaches for Evaluation of diagnostic tests.pptxEpidemiological Approaches for Evaluation of diagnostic tests.pptx
Epidemiological Approaches for Evaluation of diagnostic tests.pptx
Bhoj Raj Singh
 
Impact of hiv naat in texas nine months and counting-myra brinson - texas h...
Impact of hiv naat in texas   nine months and counting-myra brinson - texas h...Impact of hiv naat in texas   nine months and counting-myra brinson - texas h...
Impact of hiv naat in texas nine months and counting-myra brinson - texas h...
DSHS
 
POSTER Draft 5
POSTER Draft 5POSTER Draft 5
POSTER Draft 5
Duc Dang
 
Diagnostic testing 2009
Diagnostic testing 2009Diagnostic testing 2009
Diagnostic testing 2009
coolboy101pk
 

Similar to development of diagnostic enzyme assay to detect leuser virus (20)

3 update onhivtesting
3 update onhivtesting3 update onhivtesting
3 update onhivtesting
 
Basics of quality assurance laboratory services
Basics of quality assurance laboratory servicesBasics of quality assurance laboratory services
Basics of quality assurance laboratory services
 
Sensitivity assay of polymerase chain reaction for detection of canine adeno ...
Sensitivity assay of polymerase chain reaction for detection of canine adeno ...Sensitivity assay of polymerase chain reaction for detection of canine adeno ...
Sensitivity assay of polymerase chain reaction for detection of canine adeno ...
 
Advance concept of screening_Nabaraj Paudel
Advance concept of screening_Nabaraj PaudelAdvance concept of screening_Nabaraj Paudel
Advance concept of screening_Nabaraj Paudel
 
d
dd
d
 
UAB Pulmonary board review study design and statistical principles
UAB Pulmonary board review study  design and statistical principles UAB Pulmonary board review study  design and statistical principles
UAB Pulmonary board review study design and statistical principles
 
RP
RPRP
RP
 
Laboratory testing 2019
Laboratory testing 2019Laboratory testing 2019
Laboratory testing 2019
 
Basics of Quality Assurance-Medical Laboratory Services
Basics of Quality Assurance-Medical Laboratory ServicesBasics of Quality Assurance-Medical Laboratory Services
Basics of Quality Assurance-Medical Laboratory Services
 
Lab diagnosis of ctd By Dr Arif Iqbal MD Dermatology UCMS & GTBH
Lab diagnosis of ctd By Dr Arif Iqbal MD Dermatology UCMS & GTBHLab diagnosis of ctd By Dr Arif Iqbal MD Dermatology UCMS & GTBH
Lab diagnosis of ctd By Dr Arif Iqbal MD Dermatology UCMS & GTBH
 
01.-Overview-of-RTRI-Principle-and-Performance_April2021.pptx
01.-Overview-of-RTRI-Principle-and-Performance_April2021.pptx01.-Overview-of-RTRI-Principle-and-Performance_April2021.pptx
01.-Overview-of-RTRI-Principle-and-Performance_April2021.pptx
 
Epidemiological Approaches for Evaluation of diagnostic tests.pptx
Epidemiological Approaches for Evaluation of diagnostic tests.pptxEpidemiological Approaches for Evaluation of diagnostic tests.pptx
Epidemiological Approaches for Evaluation of diagnostic tests.pptx
 
Preliminary Results of an AI Classifier to Diagnose Cervical Precancer on Rea...
Preliminary Results of an AI Classifier to Diagnose Cervical Precancer on Rea...Preliminary Results of an AI Classifier to Diagnose Cervical Precancer on Rea...
Preliminary Results of an AI Classifier to Diagnose Cervical Precancer on Rea...
 
Impact of hiv naat in texas nine months and counting-myra brinson - texas h...
Impact of hiv naat in texas   nine months and counting-myra brinson - texas h...Impact of hiv naat in texas   nine months and counting-myra brinson - texas h...
Impact of hiv naat in texas nine months and counting-myra brinson - texas h...
 
05 diagnostic tests cwq
05 diagnostic tests cwq05 diagnostic tests cwq
05 diagnostic tests cwq
 
The ABC of Evidence-Based Medicine
The ABC of Evidence-Based MedicineThe ABC of Evidence-Based Medicine
The ABC of Evidence-Based Medicine
 
POSTER Draft 5
POSTER Draft 5POSTER Draft 5
POSTER Draft 5
 
Diagnostic testing 2009
Diagnostic testing 2009Diagnostic testing 2009
Diagnostic testing 2009
 
Evaluating a diagnostic test presentation www.eyenirvaan.com - part 1
Evaluating a diagnostic test presentation www.eyenirvaan.com - part 1Evaluating a diagnostic test presentation www.eyenirvaan.com - part 1
Evaluating a diagnostic test presentation www.eyenirvaan.com - part 1
 
Ravi Kumar Xcyton Innovative Diagnostic
Ravi Kumar  Xcyton Innovative DiagnosticRavi Kumar  Xcyton Innovative Diagnostic
Ravi Kumar Xcyton Innovative Diagnostic
 

Recently uploaded

Continuum emission from within the plunging region of black hole discs
Continuum emission from within the plunging region of black hole discsContinuum emission from within the plunging region of black hole discs
Continuum emission from within the plunging region of black hole discs
Sérgio Sacani
 
Quantifying Artificial Intelligence and What Comes Next!
Quantifying Artificial Intelligence and What Comes Next!Quantifying Artificial Intelligence and What Comes Next!
Quantifying Artificial Intelligence and What Comes Next!
University of Hertfordshire
 

Recently uploaded (20)

GBSN - Biochemistry (Unit 8) Enzymology
GBSN - Biochemistry (Unit 8) EnzymologyGBSN - Biochemistry (Unit 8) Enzymology
GBSN - Biochemistry (Unit 8) Enzymology
 
RACEMIzATION AND ISOMERISATION completed.pptx
RACEMIzATION AND ISOMERISATION completed.pptxRACEMIzATION AND ISOMERISATION completed.pptx
RACEMIzATION AND ISOMERISATION completed.pptx
 
PHOTOSYNTHETIC BACTERIA (OXYGENIC AND ANOXYGENIC)
PHOTOSYNTHETIC BACTERIA  (OXYGENIC AND ANOXYGENIC)PHOTOSYNTHETIC BACTERIA  (OXYGENIC AND ANOXYGENIC)
PHOTOSYNTHETIC BACTERIA (OXYGENIC AND ANOXYGENIC)
 
Virulence Analysis of Citrus canker caused by Xanthomonas axonopodis pv. citr...
Virulence Analysis of Citrus canker caused by Xanthomonas axonopodis pv. citr...Virulence Analysis of Citrus canker caused by Xanthomonas axonopodis pv. citr...
Virulence Analysis of Citrus canker caused by Xanthomonas axonopodis pv. citr...
 
Harry Coumnas Thinks That Human Teleportation is Possible in Quantum Mechanic...
Harry Coumnas Thinks That Human Teleportation is Possible in Quantum Mechanic...Harry Coumnas Thinks That Human Teleportation is Possible in Quantum Mechanic...
Harry Coumnas Thinks That Human Teleportation is Possible in Quantum Mechanic...
 
Introduction and significance of Symbiotic algae
Introduction and significance of  Symbiotic algaeIntroduction and significance of  Symbiotic algae
Introduction and significance of Symbiotic algae
 
THE GENERAL PROPERTIES OF PROTEOBACTERIA AND ITS TYPES
THE GENERAL PROPERTIES OF PROTEOBACTERIA AND ITS TYPESTHE GENERAL PROPERTIES OF PROTEOBACTERIA AND ITS TYPES
THE GENERAL PROPERTIES OF PROTEOBACTERIA AND ITS TYPES
 
FORENSIC CHEMISTRY ARSON INVESTIGATION.pdf
FORENSIC CHEMISTRY ARSON INVESTIGATION.pdfFORENSIC CHEMISTRY ARSON INVESTIGATION.pdf
FORENSIC CHEMISTRY ARSON INVESTIGATION.pdf
 
Heads-Up Multitasker: CHI 2024 Presentation.pdf
Heads-Up Multitasker: CHI 2024 Presentation.pdfHeads-Up Multitasker: CHI 2024 Presentation.pdf
Heads-Up Multitasker: CHI 2024 Presentation.pdf
 
GBSN - Microbiology (Unit 7) Microbiology in Everyday Life
GBSN - Microbiology (Unit 7) Microbiology in Everyday LifeGBSN - Microbiology (Unit 7) Microbiology in Everyday Life
GBSN - Microbiology (Unit 7) Microbiology in Everyday Life
 
GBSN - Microbiology (Unit 6) Human and Microbial interaction
GBSN - Microbiology (Unit 6) Human and Microbial interactionGBSN - Microbiology (Unit 6) Human and Microbial interaction
GBSN - Microbiology (Unit 6) Human and Microbial interaction
 
Abortion uae unmarried price +27791653574 Contact Us Dubai Abu Dhabi Sharjah ...
Abortion uae unmarried price +27791653574 Contact Us Dubai Abu Dhabi Sharjah ...Abortion uae unmarried price +27791653574 Contact Us Dubai Abu Dhabi Sharjah ...
Abortion uae unmarried price +27791653574 Contact Us Dubai Abu Dhabi Sharjah ...
 
Continuum emission from within the plunging region of black hole discs
Continuum emission from within the plunging region of black hole discsContinuum emission from within the plunging region of black hole discs
Continuum emission from within the plunging region of black hole discs
 
Film Coated Tablet and Film Coating raw materials.pdf
Film Coated Tablet and Film Coating raw materials.pdfFilm Coated Tablet and Film Coating raw materials.pdf
Film Coated Tablet and Film Coating raw materials.pdf
 
Quantifying Artificial Intelligence and What Comes Next!
Quantifying Artificial Intelligence and What Comes Next!Quantifying Artificial Intelligence and What Comes Next!
Quantifying Artificial Intelligence and What Comes Next!
 
EU START PROJECT. START-Newsletter_Issue_4.pdf
EU START PROJECT. START-Newsletter_Issue_4.pdfEU START PROJECT. START-Newsletter_Issue_4.pdf
EU START PROJECT. START-Newsletter_Issue_4.pdf
 
Manganese‐RichSandstonesasanIndicatorofAncientOxic LakeWaterConditionsinGale...
Manganese‐RichSandstonesasanIndicatorofAncientOxic  LakeWaterConditionsinGale...Manganese‐RichSandstonesasanIndicatorofAncientOxic  LakeWaterConditionsinGale...
Manganese‐RichSandstonesasanIndicatorofAncientOxic LakeWaterConditionsinGale...
 
dkNET Webinar: The 4DN Data Portal - Data, Resources and Tools to Help Elucid...
dkNET Webinar: The 4DN Data Portal - Data, Resources and Tools to Help Elucid...dkNET Webinar: The 4DN Data Portal - Data, Resources and Tools to Help Elucid...
dkNET Webinar: The 4DN Data Portal - Data, Resources and Tools to Help Elucid...
 
In-pond Race way systems for Aquaculture (IPRS).pptx
In-pond Race way systems for Aquaculture (IPRS).pptxIn-pond Race way systems for Aquaculture (IPRS).pptx
In-pond Race way systems for Aquaculture (IPRS).pptx
 
Plasma proteins_ Dr.Muralinath_Dr.c. kalyan
Plasma proteins_ Dr.Muralinath_Dr.c. kalyanPlasma proteins_ Dr.Muralinath_Dr.c. kalyan
Plasma proteins_ Dr.Muralinath_Dr.c. kalyan
 

development of diagnostic enzyme assay to detect leuser virus

  • 1. Development of diagnostic enzyme assay to detect Leuser virus By Naz
  • 2. Introduction • Leuser Virus also known as the yellow eye disease. • It has been emerging in South-East Asia in the past few months.. • 2 emerging strains, strain 1 (wild type), strain 2 (lethal) • Symptoms: yellow eye, mild flu-like symptoms however if untreated it can cause a sudden rapid decline and death. • Diagnostic ELISA-based blood test. • ELISA is very expensive and pick up both strains of the virus, so it can’t distinguish between the two strains. • The aim of this report is to develop a yellow-eye diagnostic assay based on enzyme X, and to whether the assay is a good candidate for full clinical evaluation. - Optimisation of assay (pH, temperature, wavelength, incubation time). - Determination of clinical cut-offs for the assay, to distinguish patients infected with strain 2.
  • 4. Results Figure 1- Figure Showing the concentration of enzyme X against the absorbance. Known concentration (mg/L) Measured concentration (mg/L) QC1 5 0.620 QC2 2.57 0.342 Quality control measured concentration (mg/L)
  • 5. Results Figure 2- Figure showing the standard curve for patient set A against the absorbance. Cut-off concentration =0.4
  • 6. Results 2 X 2 table for cut-off 0.4 Figure 3- Figure showing the standard curve for patient set B against the absorbance. Bellow the cut-off shows strain 1 (mild) and above the cut-off shows strain 2 (lethal). Cut-off concentration = 0.4 Strain 1 Strain 2 Positive 21(true +) 2 (false +) Negative 2 (false - ) 15 (true - ) False positives = 2 False negatives= 2
  • 7. Clinical sensitivity and specificity was calculated: • 91% sensitivity- The proportion of patients with the strain 1 were correctly identified by the test. • 88% specificity- The proportion of patients without strain 1 (meaning strain 2) were correctly identified by the test. Post Test Likelihood PPV 91% NPV 88% Table 2. Post Test Likelihood– Positive and negative predictive values • PPV- 91% likelihood of patients having strain 1. • NPV- 88% likelihood of patients not strain 1 • Lower NPV as there was a lower specificity value
  • 8. Conclusion • Low number of false negatives (2) = High sensitivity • Low number of false positives (2) = High specificity • Clinical sensitivity (91%) and clinical specificity (88%) confirmed and validated enzyme assay reliability. • These results have proven to be considered for future investigations and relevant for the development of enzyme X assay-based diagnostic for detection of leucer virus. Limitations • Low QC values- enzyme X assay was not accurate - triplicates, to limit the freeze-thaw cycles. .