This study investigated the prevalence of methicillin-resistant Staphylococcus aureus (MRSA) and the effectiveness of disinfectants at Khartoum Teaching Hospital in Sudan. Samples were collected from various units and surfaces, and tested for MRSA. The prevalence of MRSA was found to be 25% overall. Some MRSA isolates were also resistant to vancomycin. The effectiveness of four commonly used disinfectants was evaluated against MRSA isolates. Statistical analysis showed two disinfectants were significantly effective against MRSA, while two were not significantly effective. Thus, not all disinfectants used in the hospital were equally effective in controlling MRSA.