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PCR
(Polymerase chain reaction)
https://youtu.be/s1cixwDKmYY
Click here for Youtube video available in Kru’s Biology YouTube channel
What is PCR?
•PCR is atechnique that
takes specific sequence
of DNA of small amount
and amplifies it to be
used for further testing
In vitrotechnique
Principle
• Toamplify alot of double-
stranded DNAmolecules
(fragments) with same
(identical) sizeand
sequence by enzymatic
method and cycling
condition.
Steps of PCR
• 1. Denaturation of dsDNAtemplate
• 2.Annealing of primers
• 3. Extension of dsDNAmolecules
Denaturation
single stranded
• Temperature: 92-94oC
92C
3’5’
3’ 5’
+
5’3’
5’ 3’
Doublestranded DNA
Annealing
• Temperature: ~55-68 oC
• Primers bind to their complementarysequences
5’3’
5’ 3’
Forward primer Reverse primer
Extension
• Temperature: ~72C
• Time: 0.5-3min
• DNApolymerase binds to the annealed primersand
extends DNAat the 3’ end of thechain
Taq
5’
3’
Taq5’
Products
3’5’
3’ 5’
3’5’
3’ 5’
Taq
Taq
Overall Principle ofPCR
• DNA– 1 copy
• PCR
STEPS FOLLOWED IN PCR
ChemicalComponents
• Magnesium chloride: .5-2.5mM
• Buffer: pH8.3-8.8
• dNTPs:20-200µM
• Primers: 0.1-0.5µM
• DNAPolymerase: 1-2.5 units
• Target DNA: 1 µg
Basicrequirements for PCR reaction
• 1) DNAsequence of target region mustbe
known.
2) Primers - typically 20-30 basesin size.
Thesecanbe readily produced by commercial
companies. Canalso be prepared using aDNA
synthesizer
Basicrequirements for PCRreaction
• 3) Thermo-stable DNApolymerase - egTaq
polymerase
4) DNAthermal cycler - machine which can be
programmed to carry out heating and cooling
of samplesover anumber ofcycles.
Applications ofPCR
• Molecular Identification
• Genetic Engineering
• Sequencing

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