The major histocompatibility complex (MHC) plays a key role in the immune system by presenting antigens and distinguishing self from non-self. It is located on chromosome 6 in humans and contains genes like HLA that determine disease susceptibility. MHC molecules come in two classes: class I present intracellular peptides and class II present extracellular peptides. Variants in MHC genes can increase risk for certain diseases, like a variant in HLA-DQ increasing susceptibility to type 1 diabetes. Loss of MHC diversity in some populations like cheetahs can also lead to increased disease emergence due to a less broad range of antigens recognized.