1. Mass spectrometry has evolved significantly since its origins in the late 19th century with J.J. Thomson's discovery of isotopes and recording of the first mass spectra.
2. Francis Aston improved on Thomson's work by introducing focusing which allowed for more accurate mass measurements and identification of isotopes.
3. Over the 20th century, developments including improved ion sources, analyzers like magnetic sectors and quadrupoles, and applications to fields like biology and chemistry have led to mass spectrometry becoming a widely used analytical technique across many disciplines.
This document provides information about mass spectrometry including definitions, principles, components, and methods of ionization. It defines mass spectrometry as a technique that ionizes chemical species and sorts them by mass-to-charge ratio. The key components of a mass spectrometer are described as the inlet system, ion source, mass analyzer, and detector. Common ionization methods like MALDI and electrospray ionization are explained in terms of how they work to ionize samples for analysis.
Introduction, Basic Principles, Terminology, Instrumentation, Ionization techniques (EI, CI, FAB, MALDI, and ESI), Mass Analyzer (Magnetic sector instruments, Quadrupole, TOF, and ICR ), and Applications of Mass Spectrometry.
The document discusses the use of radioactive isotopes in geology and forensics. It describes the components of atoms, including protons, neutrons, and electrons. Isotopes are variants of the same element that differ in their number of neutrons. Unstable isotopes decay over time, while stable isotopes can be used for radiometric dating. Examples are given of carbon-14 dating of artifacts like the Dead Sea Scrolls and Stonehenge. Forensic cases show how carbon-14 has been used to date things like the Shroud of Turin and nuclear test fallout in teeth.
Mass spectrometry is an analytical technique that measures the mass-to-charge ratio of charged particles to identify molecules. It can be used to determine molecular weight, detect fragmentation patterns, determine molecular formulas, and analyze proteins. The technique works by ionizing molecule samples and accelerating the ions using electric fields before separating them using magnetic fields based on their mass-to-charge ratios. Lighter ions are deflected more than heavier ions. A detector then measures the deflected ion beams to produce mass spectra.
mass spectrometry for pesticides residue analysis- L1sherif Taha
This is the first lecture in series of lectures on mass spectrometry for pesticides residue analysis. This lecture (1) include Pesticides classification, introduction to mass spectrometry, vacuum system for Agilent GC MS/ MS and AB SCIEX LC MS/ MS
1. The document discusses the atomic structure, including the discovery of protons, neutrons, and electrons by scientists like Thomson, Rutherford, and Chadwick. It explains that atoms are composed of a tiny, positively charged nucleus surrounded by electrons.
2. Neutrons were discovered by Chadwick in 1932 and helped explain discrepancies in atomic masses. Neutrons have about the same mass as protons but no charge.
3. Protons, neutrons, and electrons all have different relative masses and charges. Protons and neutrons reside in the atomic nucleus, where nearly all the atom's mass is concentrated, while electrons orbit outside the nucleus.
1. Radioactivity is the spontaneous emission of radiation from unstable atomic nuclei. Henri Becquerel discovered radioactivity in 1896 while studying materials that glow under ultraviolet light.
2. The half-life of a radioactive element is the time it takes for half of the radioactive atoms in a sample to decay. Half-lives can range from fractions of a second to billions of years.
3. Radioisotopes have many uses including medical applications like cancer treatment, tracing metabolic processes, and food preservation through irradiation.
1. This chapter discusses the early history of chemistry including the Greek philosophers' ideas of fundamental substances and Democritus' theory of atoms.
2. Key laws in chemistry were established including the law of conservation of mass, the law of definite proportions, and the law of multiple proportions.
3. Scientists like Dalton, Thomson, Rutherford, and Millikan contributed greatly to our understanding of atomic structure through experiments and theories on atoms, electrons, the structure of the atom's nucleus, and isotopes.
This document provides information about mass spectrometry including definitions, principles, components, and methods of ionization. It defines mass spectrometry as a technique that ionizes chemical species and sorts them by mass-to-charge ratio. The key components of a mass spectrometer are described as the inlet system, ion source, mass analyzer, and detector. Common ionization methods like MALDI and electrospray ionization are explained in terms of how they work to ionize samples for analysis.
Introduction, Basic Principles, Terminology, Instrumentation, Ionization techniques (EI, CI, FAB, MALDI, and ESI), Mass Analyzer (Magnetic sector instruments, Quadrupole, TOF, and ICR ), and Applications of Mass Spectrometry.
The document discusses the use of radioactive isotopes in geology and forensics. It describes the components of atoms, including protons, neutrons, and electrons. Isotopes are variants of the same element that differ in their number of neutrons. Unstable isotopes decay over time, while stable isotopes can be used for radiometric dating. Examples are given of carbon-14 dating of artifacts like the Dead Sea Scrolls and Stonehenge. Forensic cases show how carbon-14 has been used to date things like the Shroud of Turin and nuclear test fallout in teeth.
Mass spectrometry is an analytical technique that measures the mass-to-charge ratio of charged particles to identify molecules. It can be used to determine molecular weight, detect fragmentation patterns, determine molecular formulas, and analyze proteins. The technique works by ionizing molecule samples and accelerating the ions using electric fields before separating them using magnetic fields based on their mass-to-charge ratios. Lighter ions are deflected more than heavier ions. A detector then measures the deflected ion beams to produce mass spectra.
mass spectrometry for pesticides residue analysis- L1sherif Taha
This is the first lecture in series of lectures on mass spectrometry for pesticides residue analysis. This lecture (1) include Pesticides classification, introduction to mass spectrometry, vacuum system for Agilent GC MS/ MS and AB SCIEX LC MS/ MS
1. The document discusses the atomic structure, including the discovery of protons, neutrons, and electrons by scientists like Thomson, Rutherford, and Chadwick. It explains that atoms are composed of a tiny, positively charged nucleus surrounded by electrons.
2. Neutrons were discovered by Chadwick in 1932 and helped explain discrepancies in atomic masses. Neutrons have about the same mass as protons but no charge.
3. Protons, neutrons, and electrons all have different relative masses and charges. Protons and neutrons reside in the atomic nucleus, where nearly all the atom's mass is concentrated, while electrons orbit outside the nucleus.
1. Radioactivity is the spontaneous emission of radiation from unstable atomic nuclei. Henri Becquerel discovered radioactivity in 1896 while studying materials that glow under ultraviolet light.
2. The half-life of a radioactive element is the time it takes for half of the radioactive atoms in a sample to decay. Half-lives can range from fractions of a second to billions of years.
3. Radioisotopes have many uses including medical applications like cancer treatment, tracing metabolic processes, and food preservation through irradiation.
1. This chapter discusses the early history of chemistry including the Greek philosophers' ideas of fundamental substances and Democritus' theory of atoms.
2. Key laws in chemistry were established including the law of conservation of mass, the law of definite proportions, and the law of multiple proportions.
3. Scientists like Dalton, Thomson, Rutherford, and Millikan contributed greatly to our understanding of atomic structure through experiments and theories on atoms, electrons, the structure of the atom's nucleus, and isotopes.
This document discusses isotopes and radioactive decay. It defines isotopes as forms of a chemical element with the same number of protons but different numbers of neutrons. It describes the history of discoveries in radioactivity by Henri Becquerel, Frederick Soddy, and Ernest Rutherford. It discusses the types of radioactive particles (alpha, beta, gamma rays), their properties, and how radioactive decay occurs. It also covers radioactive decay rates, units of radioactivity like curies, and the concept of half-life.
Mass spectrometry is a versatile analytical technique used to characterize molecules through determination of molecular weight, elemental composition, and presence of functional groups. It is used for mechanistic studies of gas-phase ion chemistry, as a detector coupled to chromatography instruments, and integrated into vacuum systems. Mass spectrometry involves the steps of sample introduction, ionization, mass analysis, and ion detection/data analysis.
Hello everyone, I am Dr. Ujwalkumar Trivedi, Head of Biotechnology Department at Marwadi University Rajkot. I teach Molecular Biology to the students of M.Sc. Microbiology and Biotechnology.
The current presentation is like a history book of various discoveries that led to the development of quantum mechanics. The presentation also tries to address the debate between the radicals (supporters of quantum theory) and classical (supporters of Newtonian physics).
Radiopharmaceutical is topic of subject Pharmaceutical inorganic Chemistry for B. Pharmacy First year students. This slide is presented with an aim to enable the students to easily understand and grasp unfamiliar concept of this topic
The document discusses the implementation of a triple quadrupole mass spectrometry (TMS) system at BHH including its components and operating principles. It then provides details on the optimization and use of the system to develop LC-MS/MS methods for screening urine samples for drugs of abuse and developing steroid analysis services. The methods allow for the simultaneous detection of multiple analytes with high sensitivity and specificity.
Hello everyone, I am Dr. Ujwalkumar Trivedi, Head of Biotechnology Department at Marwadi University Rajkot. I teach Molecular Biology to the students of M.Sc. Microbiology and Biotechnology.
The current presentation talks about the founding principles of thermodynamics and its application in biochemistry. The later part of the presentation elaborates the forces involved in biomolecular mormation.
41 Limits on Light-Speed Anisotropies from Compton Scattering of High-Energy ...Cristian Randieri PhD
Limits on Light-Speed Anisotropies from Compton Scattering of High-Energy Electrons -The American Physical Society, Physical Review Letters, June 2010, Vol. 104, N. 24, pp. 241601-1-241601-5, ISSN: 0031-9007, doi: 10.1103/PhysRevLett.104.241601
di J. P. Bocquet, D. Moricciani, V. Bellini, M. Beretta, L. Casano, A. D'Angelo, R. Di Salvo, A. Fantini, D. Franco, G. Gervino, F. Ghio, G. Giardina, B. Girolami, A. Giusa, V. G. Gurzadyan, A. Kashin, S. Knyazyan, A. Lapik, R. Lehnert, P. Levi Sandri, A. Lleres, F. Mammoliti, G. Mandaglio, M. Manganaro, A. Margarian, S. Mehrabyan, R. Messi, V. Nedorezov, C. Perrin, C. Randieri, D. Rebreyend, N. Rudnev, G. Russo, C. Schaerf, M. L. Sperduto, M. C. Sutera, A. Turinge, V. Vegna (2010)
Abstract
The possibility of anisotropies in the speed of light relative to the limiting speed of electrons is considered. The absence of sidereal variations in the energy of Compton-edge photons at the ESRF's GRAAL facility constrains such anisotropies representing the first non-threshold collision-kinematics study of Lorentz violation. When interpreted within the minimal Standard-Model Extension, this result yields the two-sided limit of 1.6 x 10^{-14} at 95% confidence level on a combination of the parity-violating photon and electron coefficients kappa_{o+} and c. This new constraint provides an improvement over previous bounds by one order of magnitude.
This document discusses radioactivity and radiopharmaceuticals used in nuclear medicine for diagnosis and treatment. It defines isotopes, radioactive isotopes, and radioactivity. The major types of radioactive decay are described, including alpha particles, beta particles, gamma rays, and electron capture. The properties and effects of each type of radiation are summarized. The kinetics of radioactive decay are explained using decay constant and half-life. Radiation dosimetry is introduced as the calculation of radiation dose exposed to and absorbed by objects.
This document provides an overview of radioisotopes in medicine. It discusses the background and history of radioisotope use from their discovery. Key topics covered include common terminology, types of radiation, units of measurement, and applications of radioisotopes in research, diagnosis and therapy. Specifically, it outlines several diagnostic tests that use radioisotopes like thyroid scans and bone scans. It also discusses therapeutic uses of radioisotopes to treat cancers and examines biological effects and radiation protection.
Study on the Energy Level Splitting of the Francium Atom Fr in an External Ma...ijtsrd
In This paper the normal Francium atom is considered with the use of non relativistic quantum mechanical approach and the Bohrs atomic model. We study the energy shift values of a Francium atom by the external magnetic fields effect we considered the two cases that effect without external magnetic fields and those of with the external magnetic fields. Win Moe Thant "Study on the Energy Level Splitting of the Francium Atom (Fr) in an External Magnetic Field" Published in International Journal of Trend in Scientific Research and Development (ijtsrd), ISSN: 2456-6470, Volume-3 | Issue-5 , August 2019, URL: https://www.ijtsrd.com/papers/ijtsrd26730.pdf Paper URL: https://www.ijtsrd.com/physics/atomic-physics/26730/study-on-the-energy-level-splitting-of-the-francium-atom-fr-in-an-external-magnetic-field/win-moe-thant
This document summarizes an NMR study of the structures of two triterpenes, Davallene (1) and Adipedatol (2), isolated from Mexican Adiantum capillus-veneris. The authors analyzed the compounds using 2D and 3D NMR techniques including COSY, TOCSY, HSQC, and HMBC to assign proton and carbon signals and determine the structures. Single crystal X-ray diffraction was also used. The NMR data provided connectivity information between protonated carbons, though some isomeric structures remained possible. The analysis began with an identified isopropyl group to determine an unambiguous identification.
Mass spectrometry is a powerful technique for protein identification and quantification. It involves several key steps: protein extraction and digestion, peptide separation by liquid chromatography, ionization of peptides using techniques like MALDI or ESI, mass analysis using instruments like quadrupoles or orbitraps to separate ions by mass-to-charge ratio, and data analysis to identify proteins from the mass spectra. Tandem mass spectrometry uses collision-induced dissociation to fragment peptides and generate sequence information that allows unambiguous protein identification.
Generalities on the use of Deuterium Nuclear Magnetic Resonance . Explains its used in chemistry and biochemistry as well as the physical mechanisms needed to understand this method.
The document discusses evidence that supports an old earth, including layers of sedimentary rock, plate tectonics, and radiometric dating techniques. It explains that radiometric dating determines an object's age by measuring radioactive isotopes and decay products. Carbon-14 dating works for objects up to 50,000 years old, while potassium-argon dating can date much older fossils by measuring the isotopes of potassium and argon. The document provides details on how these radiometric dating methods are used to scientifically date fossils and determine that the earth is older than young earth creationist accounts claim.
Javanese volcanic allophane adsorbent as heavy metal adsorber to improve the ...Alexander Decker
- The document analyzes the use of natural allophane from Javanese volcanoes as an adsorbent for removing heavy metals from water.
- Characterization of the allophane samples using NaF, pH, FTIR, and XRD testing confirmed the presence of allophane.
- Activation of the allophane in NaOH solutions was found to increase its acidity and adsorption capacity for heavy metals like chromium, iron, cadmium, copper, lead, and manganese by 50-100% compared to non-activated allophane.
AN INTRODUCTION TO BASIC PHENOMENA OF PLASMA PHYSICSDr. Ved Nath Jha
Plasma is a set of neutral and charged particles which reveals a number of collective behaviors. The very
long range coulomb forces enable the charged particles in plasma to work together with one another
simultaneously. The study of plasma is actually a really ancient area of investigation in plasma physics
and it remains to be among the vital fields due to the crucial role of its in most plasma uses including
plasma processing, fabrication of semiconductor systems, etching, etc. except the presence of just ions
and electrons, the plasma in many instances, has a number of other species of ions like negative ions
which impact the complete plasma behaviour. Within this paper we study about the fundamental ideas of
plasma physics.
Blood plasma is the liquid component of blood that suspends blood cells. It makes up about 55% of blood volume and is mostly water, containing dissolved proteins, glucose, clotting factors, and other components. Fresh frozen plasma is prepared from donated blood and frozen, containing all coagulation factors. It is used to treat coagulation disorders. During World War II, dried plasma was developed that could be easily stored and transported, helping provide blood products for armed forces. Plasma is also present as the fourth state of matter and the most common in the universe, consisting of partially ionized gas that responds strongly to electromagnetic fields.
MALDI-TOF is a soft ionization technique used in mass spectrometry to analyze biomolecules such as proteins, peptides, DNA, and sugars. It works by mixing the sample with a matrix and using a laser to ionize the mixed analytes. Franz Hillenkamp and Michael Karas coined the term MALDI in 1985 after finding amino acid alanine could be easily ionized using tryptophan as a matrix. MALDI-TOF is commonly used for protein and peptide mass fingerprinting in proteomics and microbial identification in clinical and microbiological applications. It provides sensitive, high-throughput, and accurate analysis of biomolecules.
This document provides an overview of mass spectrometry. It begins with a brief introduction and history of mass spectrometry. It then discusses the basic principles, including how samples are ionized and the ions are separated based on their mass-to-charge ratio. Equations related to ion acceleration and separation in magnetic and electric fields are also presented. Diagrams of mass spectrometry instrumentation are shown and various ionization techniques such as electron ionization, chemical ionization, and matrix-assisted laser desorption/ionization are described.
This document provides an overview of mass spectrometry. It discusses how mass spectrometry works by ionizing sample molecules and then separating the ions based on their mass-to-charge ratio. The key components of a mass spectrometer are described, including sample introduction systems, ion sources, mass analyzers, and detectors. Common techniques like electron ionization, chemical ionization, and matrix-assisted laser desorption/ionization are also summarized. The document outlines the wide applications of mass spectrometry across many scientific fields.
This document discusses the principles of instrumental analysis and analytical chemistry. It provides an overview of various analytical techniques including spectroscopy, chromatography, electrochemistry, and thermal methods. It also discusses instrumentation components, experimental methods, quantitative and qualitative applications, and developments in various analytical techniques since the first edition. The authors acknowledge contributions from various professors and researchers who reviewed portions of the manuscript.
This document discusses isotopes and radioactive decay. It defines isotopes as forms of a chemical element with the same number of protons but different numbers of neutrons. It describes the history of discoveries in radioactivity by Henri Becquerel, Frederick Soddy, and Ernest Rutherford. It discusses the types of radioactive particles (alpha, beta, gamma rays), their properties, and how radioactive decay occurs. It also covers radioactive decay rates, units of radioactivity like curies, and the concept of half-life.
Mass spectrometry is a versatile analytical technique used to characterize molecules through determination of molecular weight, elemental composition, and presence of functional groups. It is used for mechanistic studies of gas-phase ion chemistry, as a detector coupled to chromatography instruments, and integrated into vacuum systems. Mass spectrometry involves the steps of sample introduction, ionization, mass analysis, and ion detection/data analysis.
Hello everyone, I am Dr. Ujwalkumar Trivedi, Head of Biotechnology Department at Marwadi University Rajkot. I teach Molecular Biology to the students of M.Sc. Microbiology and Biotechnology.
The current presentation is like a history book of various discoveries that led to the development of quantum mechanics. The presentation also tries to address the debate between the radicals (supporters of quantum theory) and classical (supporters of Newtonian physics).
Radiopharmaceutical is topic of subject Pharmaceutical inorganic Chemistry for B. Pharmacy First year students. This slide is presented with an aim to enable the students to easily understand and grasp unfamiliar concept of this topic
The document discusses the implementation of a triple quadrupole mass spectrometry (TMS) system at BHH including its components and operating principles. It then provides details on the optimization and use of the system to develop LC-MS/MS methods for screening urine samples for drugs of abuse and developing steroid analysis services. The methods allow for the simultaneous detection of multiple analytes with high sensitivity and specificity.
Hello everyone, I am Dr. Ujwalkumar Trivedi, Head of Biotechnology Department at Marwadi University Rajkot. I teach Molecular Biology to the students of M.Sc. Microbiology and Biotechnology.
The current presentation talks about the founding principles of thermodynamics and its application in biochemistry. The later part of the presentation elaborates the forces involved in biomolecular mormation.
41 Limits on Light-Speed Anisotropies from Compton Scattering of High-Energy ...Cristian Randieri PhD
Limits on Light-Speed Anisotropies from Compton Scattering of High-Energy Electrons -The American Physical Society, Physical Review Letters, June 2010, Vol. 104, N. 24, pp. 241601-1-241601-5, ISSN: 0031-9007, doi: 10.1103/PhysRevLett.104.241601
di J. P. Bocquet, D. Moricciani, V. Bellini, M. Beretta, L. Casano, A. D'Angelo, R. Di Salvo, A. Fantini, D. Franco, G. Gervino, F. Ghio, G. Giardina, B. Girolami, A. Giusa, V. G. Gurzadyan, A. Kashin, S. Knyazyan, A. Lapik, R. Lehnert, P. Levi Sandri, A. Lleres, F. Mammoliti, G. Mandaglio, M. Manganaro, A. Margarian, S. Mehrabyan, R. Messi, V. Nedorezov, C. Perrin, C. Randieri, D. Rebreyend, N. Rudnev, G. Russo, C. Schaerf, M. L. Sperduto, M. C. Sutera, A. Turinge, V. Vegna (2010)
Abstract
The possibility of anisotropies in the speed of light relative to the limiting speed of electrons is considered. The absence of sidereal variations in the energy of Compton-edge photons at the ESRF's GRAAL facility constrains such anisotropies representing the first non-threshold collision-kinematics study of Lorentz violation. When interpreted within the minimal Standard-Model Extension, this result yields the two-sided limit of 1.6 x 10^{-14} at 95% confidence level on a combination of the parity-violating photon and electron coefficients kappa_{o+} and c. This new constraint provides an improvement over previous bounds by one order of magnitude.
This document discusses radioactivity and radiopharmaceuticals used in nuclear medicine for diagnosis and treatment. It defines isotopes, radioactive isotopes, and radioactivity. The major types of radioactive decay are described, including alpha particles, beta particles, gamma rays, and electron capture. The properties and effects of each type of radiation are summarized. The kinetics of radioactive decay are explained using decay constant and half-life. Radiation dosimetry is introduced as the calculation of radiation dose exposed to and absorbed by objects.
This document provides an overview of radioisotopes in medicine. It discusses the background and history of radioisotope use from their discovery. Key topics covered include common terminology, types of radiation, units of measurement, and applications of radioisotopes in research, diagnosis and therapy. Specifically, it outlines several diagnostic tests that use radioisotopes like thyroid scans and bone scans. It also discusses therapeutic uses of radioisotopes to treat cancers and examines biological effects and radiation protection.
Study on the Energy Level Splitting of the Francium Atom Fr in an External Ma...ijtsrd
In This paper the normal Francium atom is considered with the use of non relativistic quantum mechanical approach and the Bohrs atomic model. We study the energy shift values of a Francium atom by the external magnetic fields effect we considered the two cases that effect without external magnetic fields and those of with the external magnetic fields. Win Moe Thant "Study on the Energy Level Splitting of the Francium Atom (Fr) in an External Magnetic Field" Published in International Journal of Trend in Scientific Research and Development (ijtsrd), ISSN: 2456-6470, Volume-3 | Issue-5 , August 2019, URL: https://www.ijtsrd.com/papers/ijtsrd26730.pdf Paper URL: https://www.ijtsrd.com/physics/atomic-physics/26730/study-on-the-energy-level-splitting-of-the-francium-atom-fr-in-an-external-magnetic-field/win-moe-thant
This document summarizes an NMR study of the structures of two triterpenes, Davallene (1) and Adipedatol (2), isolated from Mexican Adiantum capillus-veneris. The authors analyzed the compounds using 2D and 3D NMR techniques including COSY, TOCSY, HSQC, and HMBC to assign proton and carbon signals and determine the structures. Single crystal X-ray diffraction was also used. The NMR data provided connectivity information between protonated carbons, though some isomeric structures remained possible. The analysis began with an identified isopropyl group to determine an unambiguous identification.
Mass spectrometry is a powerful technique for protein identification and quantification. It involves several key steps: protein extraction and digestion, peptide separation by liquid chromatography, ionization of peptides using techniques like MALDI or ESI, mass analysis using instruments like quadrupoles or orbitraps to separate ions by mass-to-charge ratio, and data analysis to identify proteins from the mass spectra. Tandem mass spectrometry uses collision-induced dissociation to fragment peptides and generate sequence information that allows unambiguous protein identification.
Generalities on the use of Deuterium Nuclear Magnetic Resonance . Explains its used in chemistry and biochemistry as well as the physical mechanisms needed to understand this method.
The document discusses evidence that supports an old earth, including layers of sedimentary rock, plate tectonics, and radiometric dating techniques. It explains that radiometric dating determines an object's age by measuring radioactive isotopes and decay products. Carbon-14 dating works for objects up to 50,000 years old, while potassium-argon dating can date much older fossils by measuring the isotopes of potassium and argon. The document provides details on how these radiometric dating methods are used to scientifically date fossils and determine that the earth is older than young earth creationist accounts claim.
Javanese volcanic allophane adsorbent as heavy metal adsorber to improve the ...Alexander Decker
- The document analyzes the use of natural allophane from Javanese volcanoes as an adsorbent for removing heavy metals from water.
- Characterization of the allophane samples using NaF, pH, FTIR, and XRD testing confirmed the presence of allophane.
- Activation of the allophane in NaOH solutions was found to increase its acidity and adsorption capacity for heavy metals like chromium, iron, cadmium, copper, lead, and manganese by 50-100% compared to non-activated allophane.
AN INTRODUCTION TO BASIC PHENOMENA OF PLASMA PHYSICSDr. Ved Nath Jha
Plasma is a set of neutral and charged particles which reveals a number of collective behaviors. The very
long range coulomb forces enable the charged particles in plasma to work together with one another
simultaneously. The study of plasma is actually a really ancient area of investigation in plasma physics
and it remains to be among the vital fields due to the crucial role of its in most plasma uses including
plasma processing, fabrication of semiconductor systems, etching, etc. except the presence of just ions
and electrons, the plasma in many instances, has a number of other species of ions like negative ions
which impact the complete plasma behaviour. Within this paper we study about the fundamental ideas of
plasma physics.
Blood plasma is the liquid component of blood that suspends blood cells. It makes up about 55% of blood volume and is mostly water, containing dissolved proteins, glucose, clotting factors, and other components. Fresh frozen plasma is prepared from donated blood and frozen, containing all coagulation factors. It is used to treat coagulation disorders. During World War II, dried plasma was developed that could be easily stored and transported, helping provide blood products for armed forces. Plasma is also present as the fourth state of matter and the most common in the universe, consisting of partially ionized gas that responds strongly to electromagnetic fields.
MALDI-TOF is a soft ionization technique used in mass spectrometry to analyze biomolecules such as proteins, peptides, DNA, and sugars. It works by mixing the sample with a matrix and using a laser to ionize the mixed analytes. Franz Hillenkamp and Michael Karas coined the term MALDI in 1985 after finding amino acid alanine could be easily ionized using tryptophan as a matrix. MALDI-TOF is commonly used for protein and peptide mass fingerprinting in proteomics and microbial identification in clinical and microbiological applications. It provides sensitive, high-throughput, and accurate analysis of biomolecules.
This document provides an overview of mass spectrometry. It begins with a brief introduction and history of mass spectrometry. It then discusses the basic principles, including how samples are ionized and the ions are separated based on their mass-to-charge ratio. Equations related to ion acceleration and separation in magnetic and electric fields are also presented. Diagrams of mass spectrometry instrumentation are shown and various ionization techniques such as electron ionization, chemical ionization, and matrix-assisted laser desorption/ionization are described.
This document provides an overview of mass spectrometry. It discusses how mass spectrometry works by ionizing sample molecules and then separating the ions based on their mass-to-charge ratio. The key components of a mass spectrometer are described, including sample introduction systems, ion sources, mass analyzers, and detectors. Common techniques like electron ionization, chemical ionization, and matrix-assisted laser desorption/ionization are also summarized. The document outlines the wide applications of mass spectrometry across many scientific fields.
This document discusses the principles of instrumental analysis and analytical chemistry. It provides an overview of various analytical techniques including spectroscopy, chromatography, electrochemistry, and thermal methods. It also discusses instrumentation components, experimental methods, quantitative and qualitative applications, and developments in various analytical techniques since the first edition. The authors acknowledge contributions from various professors and researchers who reviewed portions of the manuscript.
MASS SPECTROMETRY(mass-spec) -2013 - P.ravisankar- WHAT ABOUT MASS SPECTROMET...Dr. Ravi Sankar
MASS SPECTROMETRY(mass-spec) -2013 - P.ravisankar-WHAT ABOUT MASS SPECTROMETRY,BASIC PRINCIPLE,INSTRUMENTATION, ION SOURCES, MASS ANALYZERS,APPLICATIONS.
P.RAVISANKAR, VIGNAN PHARMACY COLLEGE, VADLAMUDI
The document discusses mass spectrometry, including:
1) The principles of mass spectrometry which involve ionizing samples and separating ions based on their mass-to-charge ratio.
2) Different ionization techniques like electron impact ionization which uses energetic electrons to produce ions.
3) The typical instrumentation of a mass spectrometer including an ionizer, accelerator, mass analyzer, and detector.
4) A brief history of developments in mass spectrometry from the late 19th century onward.
The document discusses using solar energy as a pumping source for lasers. It provides background on lasers and how they operate via stimulated emission. Researchers have started exploring using sunlight as the pumping source due to its abundant energy and broad spectrum. The first solar-pumped solid-state laser was reported in 1966, but interest increased in recent years. Some studies have achieved over 100 watts of continuous power from solar lasers. Further improving efficiency and achieving specific laser properties could broaden their applications in renewable energy.
The document provides an overview of topics covered in physics, listing 18 chapters and the page numbers where their content can be found. It includes motion, forces, energy, circular motion, fluids, oscillations, waves, optics, heat, thermodynamics, electromagnetism, electronics, atomic and nuclear physics. Vector quantities and equilibrium are discussed in more detail, explaining concepts like scalars, vectors, addition and subtraction of vectors, and concurrent and coplanar forces. Torque, moment arm, angular velocity and acceleration are also defined.
The Basics of Mass Spectrometry/Spectroscopy.pptxBhanu Yadav
This Project Aims to Describe the basics of Mass Spectrometry with a general overview on how to read a mass spectrum and a case study which used UHPLC-MS in Forensic Toxicology
This document provides information about CHEMY 323, a spectroscopy course offered at the University of Bahrain in 2023-2024. It will be held on Mondays and Wednesdays from 8:00-9:15 am in building S41-0031. The instructor is Dr. Javed Iqbal, whose office is located in S41-1035 and can be reached by mobile phone or email. The document defines spectroscopy and the electromagnetic spectrum, and describes several spectroscopic techniques including UV-Vis, IR, NMR, mass spectrometry, and elemental analysis that can be used to obtain information about substances.
1) An ion mobility spectrometer is described that uses electrospray ionization and a downstream quadrupole mass spectrometer for detection. This allows for high resolving power separations of up to 200 for favorable cases of singly and multiply charged ions.
2) Initial measurements are reported of gas-phase ion mobility spectra of mass-identified multiply charged ions migrating at atmospheric pressure. These spectra confirm collision cross sections are strongly affected by charge state.
3) Baseline separations of multiply charged cytochrome c and ubiquitin ions demonstrate improved resolving power compared to previous atmospheric pressure ion mobility spectrometers. Various factors affecting resolving power are discussed.
The document provides an overview of radiation physics, beginning with the composition of matter and basic atomic structure. It describes the Bohr-Rutherford model of the atom and the development of the quantum mechanical model. Key concepts covered include atomic number, mass number, ionization, electrostatic and centrifugal forces, electron binding energy, and the nature of radiation.
The document then focuses on the history and properties of x-rays, the components and functioning of an x-ray machine, including the x-ray tube, cathode, anode, target, transformers, and power supply. Factors that control the x-ray beam such as exposure time, current and voltage are also summarized.
Analyser of Quadrupole and time of flight.Mass Analysers.
Summary of Mass Analyser.
Quadrupole mass spectrometer.
Factors Affecting Function Of Quadrupole.
Principal, Construction & Working.
Linear Time of flight mass spectrometer.
Time Of Flight Mass Spectrometry, Need For Variant Type Of Time of Flight Analyser.
Variant Of Linear TOF Analyser.
Ion mirror / ion reflectron / reflectron. Time-lag focussing.
Advantages, Disadvantage, Application.
The document discusses the history of atomic theory, from early Greek ideas of matter as continuous elements, to modern atomic structure and quantum theory. It covers key contributors like Dalton who proposed atoms and developed laws of definite and multiple proportions, and Rutherford who developed the nuclear model of the atom based on his gold foil experiment. Later sections discuss atomic models like Bohr's and the development of the quantum model to describe electronic structure.
Mass spectrometry is an analytical technique that identifies unknown compounds and quantifies known materials by measuring their mass-to-charge ratios. It works by ionizing chemical compounds, generating charged molecule fragments, and measuring their mass-to-charge ratios using techniques like time-of-flight analysis. The document discusses the principles, instrumentation including ion sources, mass analyzers, and detectors, applications in fields like proteomics and metabolomics, and guidelines for interpreting mass spectra.
X-ray crystallography is a technique used to determine the arrangement of atoms in crystalline solids by using X-rays diffracted at specific angles from the atomic planes in a crystal. It has been fundamental in developing fields like chemistry, materials science, and biology by revealing atomic structures of molecules, compounds, and minerals. Some key developments include determining atomic sizes and bond types in the early 1900s, revealing protein and biological molecule structures, and continuing to characterize new materials.
This literature survey discusses plasma spectroscopy and its applications. Spectroscopy is used to characterize plasmas by determining properties like electron temperature and density. Spectroscopy works by analyzing the emissions from plasmas using instruments like monochromators and detectors. Collisional radiative models are then used to identify emitting species and plasma characteristics based on the emission data. The document provides background on the science of spectroscopy and plasmas. It also discusses experimental setup, techniques for analyzing low temperature plasma emissions, and applications of plasma spectroscopy in various fields.
The document discusses mass spectrometry, including its definition, components, working principle, and applications. Mass spectrometry involves ionizing chemical compounds and determining their masses using electric and magnetic fields. It has several key uses such as identifying unknown compounds, determining molecular structures, and dating artifacts. The core components are an ionization source, mass analyzer, and ion detector. It works by producing ions from samples, separating them based on mass-to-charge ratio, and detecting the relative abundances to form mass spectra. Applications include proteomics, metabolomics, forensics, and carbon dating.
La Espectrometría de Masas (EM) es una poderosa y versátil técnica analítica que permite determinar la distribución de las moléculas de una sustancia en función de su masas. Es muy utilizada para identificar los elementos presentes en muestras de materia (masas de átomos, moléculas o fragmentos de moléculas) y determinar sus concentraciones. Casi todos los elementos del Sistema Periódico se pueden determinar por espectrometría de masas.
This document provides an overview of atomic structure and the development of atomic theory. It discusses early Greek philosophers' idea that matter is made of tiny particles and the contributions of scientists like Dalton, Thomson, Rutherford, and Millikan. Dalton established the basic atomic theory that all matter is made of atoms that cannot be divided. Rutherford's gold foil experiment led to the discovery of the nuclear model of the atom with a small, dense nucleus. The document also covers atomic and mass numbers, isotopes, atomic weights, and the periodic table.
This slide discusses the principle, instrumentation, process, detectors, sample ,solvents used in mass spectroscopy and also its applications and limitations.
The technology uses reclaimed CO₂ as the dyeing medium in a closed loop process. When pressurized, CO₂ becomes supercritical (SC-CO₂). In this state CO₂ has a very high solvent power, allowing the dye to dissolve easily.
The use of Nauplii and metanauplii artemia in aquaculture (brine shrimp).pptxMAGOTI ERNEST
Although Artemia has been known to man for centuries, its use as a food for the culture of larval organisms apparently began only in the 1930s, when several investigators found that it made an excellent food for newly hatched fish larvae (Litvinenko et al., 2023). As aquaculture developed in the 1960s and ‘70s, the use of Artemia also became more widespread, due both to its convenience and to its nutritional value for larval organisms (Arenas-Pardo et al., 2024). The fact that Artemia dormant cysts can be stored for long periods in cans, and then used as an off-the-shelf food requiring only 24 h of incubation makes them the most convenient, least labor-intensive, live food available for aquaculture (Sorgeloos & Roubach, 2021). The nutritional value of Artemia, especially for marine organisms, is not constant, but varies both geographically and temporally. During the last decade, however, both the causes of Artemia nutritional variability and methods to improve poorquality Artemia have been identified (Loufi et al., 2024).
Brine shrimp (Artemia spp.) are used in marine aquaculture worldwide. Annually, more than 2,000 metric tons of dry cysts are used for cultivation of fish, crustacean, and shellfish larva. Brine shrimp are important to aquaculture because newly hatched brine shrimp nauplii (larvae) provide a food source for many fish fry (Mozanzadeh et al., 2021). Culture and harvesting of brine shrimp eggs represents another aspect of the aquaculture industry. Nauplii and metanauplii of Artemia, commonly known as brine shrimp, play a crucial role in aquaculture due to their nutritional value and suitability as live feed for many aquatic species, particularly in larval stages (Sorgeloos & Roubach, 2021).
ESR spectroscopy in liquid food and beverages.pptxPRIYANKA PATEL
With increasing population, people need to rely on packaged food stuffs. Packaging of food materials requires the preservation of food. There are various methods for the treatment of food to preserve them and irradiation treatment of food is one of them. It is the most common and the most harmless method for the food preservation as it does not alter the necessary micronutrients of food materials. Although irradiated food doesn’t cause any harm to the human health but still the quality assessment of food is required to provide consumers with necessary information about the food. ESR spectroscopy is the most sophisticated way to investigate the quality of the food and the free radicals induced during the processing of the food. ESR spin trapping technique is useful for the detection of highly unstable radicals in the food. The antioxidant capability of liquid food and beverages in mainly performed by spin trapping technique.
The binding of cosmological structures by massless topological defectsSérgio Sacani
Assuming spherical symmetry and weak field, it is shown that if one solves the Poisson equation or the Einstein field
equations sourced by a topological defect, i.e. a singularity of a very specific form, the result is a localized gravitational
field capable of driving flat rotation (i.e. Keplerian circular orbits at a constant speed for all radii) of test masses on a thin
spherical shell without any underlying mass. Moreover, a large-scale structure which exploits this solution by assembling
concentrically a number of such topological defects can establish a flat stellar or galactic rotation curve, and can also deflect
light in the same manner as an equipotential (isothermal) sphere. Thus, the need for dark matter or modified gravity theory is
mitigated, at least in part.
Unlocking the mysteries of reproduction: Exploring fecundity and gonadosomati...AbdullaAlAsif1
The pygmy halfbeak Dermogenys colletei, is known for its viviparous nature, this presents an intriguing case of relatively low fecundity, raising questions about potential compensatory reproductive strategies employed by this species. Our study delves into the examination of fecundity and the Gonadosomatic Index (GSI) in the Pygmy Halfbeak, D. colletei (Meisner, 2001), an intriguing viviparous fish indigenous to Sarawak, Borneo. We hypothesize that the Pygmy halfbeak, D. colletei, may exhibit unique reproductive adaptations to offset its low fecundity, thus enhancing its survival and fitness. To address this, we conducted a comprehensive study utilizing 28 mature female specimens of D. colletei, carefully measuring fecundity and GSI to shed light on the reproductive adaptations of this species. Our findings reveal that D. colletei indeed exhibits low fecundity, with a mean of 16.76 ± 2.01, and a mean GSI of 12.83 ± 1.27, providing crucial insights into the reproductive mechanisms at play in this species. These results underscore the existence of unique reproductive strategies in D. colletei, enabling its adaptation and persistence in Borneo's diverse aquatic ecosystems, and call for further ecological research to elucidate these mechanisms. This study lends to a better understanding of viviparous fish in Borneo and contributes to the broader field of aquatic ecology, enhancing our knowledge of species adaptations to unique ecological challenges.
The debris of the ‘last major merger’ is dynamically youngSérgio Sacani
The Milky Way’s (MW) inner stellar halo contains an [Fe/H]-rich component with highly eccentric orbits, often referred to as the
‘last major merger.’ Hypotheses for the origin of this component include Gaia-Sausage/Enceladus (GSE), where the progenitor
collided with the MW proto-disc 8–11 Gyr ago, and the Virgo Radial Merger (VRM), where the progenitor collided with the
MW disc within the last 3 Gyr. These two scenarios make different predictions about observable structure in local phase space,
because the morphology of debris depends on how long it has had to phase mix. The recently identified phase-space folds in Gaia
DR3 have positive caustic velocities, making them fundamentally different than the phase-mixed chevrons found in simulations
at late times. Roughly 20 per cent of the stars in the prograde local stellar halo are associated with the observed caustics. Based
on a simple phase-mixing model, the observed number of caustics are consistent with a merger that occurred 1–2 Gyr ago.
We also compare the observed phase-space distribution to FIRE-2 Latte simulations of GSE-like mergers, using a quantitative
measurement of phase mixing (2D causticality). The observed local phase-space distribution best matches the simulated data
1–2 Gyr after collision, and certainly not later than 3 Gyr. This is further evidence that the progenitor of the ‘last major merger’
did not collide with the MW proto-disc at early times, as is thought for the GSE, but instead collided with the MW disc within
the last few Gyr, consistent with the body of work surrounding the VRM.
When I was asked to give a companion lecture in support of ‘The Philosophy of Science’ (https://shorturl.at/4pUXz) I decided not to walk through the detail of the many methodologies in order of use. Instead, I chose to employ a long standing, and ongoing, scientific development as an exemplar. And so, I chose the ever evolving story of Thermodynamics as a scientific investigation at its best.
Conducted over a period of >200 years, Thermodynamics R&D, and application, benefitted from the highest levels of professionalism, collaboration, and technical thoroughness. New layers of application, methodology, and practice were made possible by the progressive advance of technology. In turn, this has seen measurement and modelling accuracy continually improved at a micro and macro level.
Perhaps most importantly, Thermodynamics rapidly became a primary tool in the advance of applied science/engineering/technology, spanning micro-tech, to aerospace and cosmology. I can think of no better a story to illustrate the breadth of scientific methodologies and applications at their best.
Current Ms word generated power point presentation covers major details about the micronuclei test. It's significance and assays to conduct it. It is used to detect the micronuclei formation inside the cells of nearly every multicellular organism. It's formation takes place during chromosomal sepration at metaphase.
ESPP presentation to EU Waste Water Network, 4th June 2024 “EU policies driving nutrient removal and recycling
and the revised UWWTD (Urban Waste Water Treatment Directive)”
Authoring a personal GPT for your research and practice: How we created the Q...Leonel Morgado
Thematic analysis in qualitative research is a time-consuming and systematic task, typically done using teams. Team members must ground their activities on common understandings of the major concepts underlying the thematic analysis, and define criteria for its development. However, conceptual misunderstandings, equivocations, and lack of adherence to criteria are challenges to the quality and speed of this process. Given the distributed and uncertain nature of this process, we wondered if the tasks in thematic analysis could be supported by readily available artificial intelligence chatbots. Our early efforts point to potential benefits: not just saving time in the coding process but better adherence to criteria and grounding, by increasing triangulation between humans and artificial intelligence. This tutorial will provide a description and demonstration of the process we followed, as two academic researchers, to develop a custom ChatGPT to assist with qualitative coding in the thematic data analysis process of immersive learning accounts in a survey of the academic literature: QUAL-E Immersive Learning Thematic Analysis Helper. In the hands-on time, participants will try out QUAL-E and develop their ideas for their own qualitative coding ChatGPT. Participants that have the paid ChatGPT Plus subscription can create a draft of their assistants. The organizers will provide course materials and slide deck that participants will be able to utilize to continue development of their custom GPT. The paid subscription to ChatGPT Plus is not required to participate in this workshop, just for trying out personal GPTs during it.
hematic appreciation test is a psychological assessment tool used to measure an individual's appreciation and understanding of specific themes or topics. This test helps to evaluate an individual's ability to connect different ideas and concepts within a given theme, as well as their overall comprehension and interpretation skills. The results of the test can provide valuable insights into an individual's cognitive abilities, creativity, and critical thinking skills
Travis Hills' Endeavors in Minnesota: Fostering Environmental and Economic Pr...Travis Hills MN
Travis Hills of Minnesota developed a method to convert waste into high-value dry fertilizer, significantly enriching soil quality. By providing farmers with a valuable resource derived from waste, Travis Hills helps enhance farm profitability while promoting environmental stewardship. Travis Hills' sustainable practices lead to cost savings and increased revenue for farmers by improving resource efficiency and reducing waste.
Travis Hills' Endeavors in Minnesota: Fostering Environmental and Economic Pr...
L1 introduction and history
1. 1
1
Lecture 1 Introduction, History, Scope and Terminology of Mass
Spectrometry
1.1 Topics Not Covered in Detail
Isotope Ratio MS
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Inductively Coupled Plasma (ICP) MS
Trace elemental analysis and speciation
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Accelerator Mass Spectrometry (AMS)
Highest dynamic range of all methods: discriminates 1 in 1012
minor and
adjacent major isotopes
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Surface modification and patterning
Soft landing ion deposition on
surface
SIMS surface ionization method
Reactive landing
TPD – temperature programmed
desorption
Tandem van der Graaf accelerator
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1.2 Some Applications
Materials Analysis:
Meteorite causing excitement about life
possibly existing on Mars. This first
meteorite found by the Antarctic team
in 1984 was initially mis-identified as a
diogenite, a rare type of achrondite
meteorite. Isotope ratios are consistent
with other Martian meteorites but
inconsistent with terrestrial values
PAH analysis by laser microprobe MS
40 μm, and detection limits sub-attomole
(>107
molecules, 1 amol = 10-18
mol)
http://www- rator.jsc.nasa.gov/
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Applications in biology
Imaging and very high mass
MALDI microanalysis
Courtesy from Professor R. Caprioli
Courtesy Prof. Mark Bier
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1.3 History of Mass Spectrometry
Thomson and the Positive Ray Apparatus
C. Capillary
B. Cathode
A. Al anode 20 kV
E. Detection (willenite) fluorescence o photoplate
Vacuum using rotary pump
Parallel B, E fields
Thomson’s parabola apparatus for the study of positive rays. The collimated beam or positive rays
issuing from the narrow tube, C, passes through coincident electric and magnetic fields at D
Positive Ray Apparatus
Source, Analyzer, Detection
Thomson’s mass spectrograph (parabola instrument) produces e/mv deflections in y direction,
e/mv2
deflections in x direction
Bev=mv2
/r; y deflection 1/r=Be/mv
Ee=mv2
/r; x deflection 1/r=Ee/mv2
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So parabolas B B force E E force
Photograph of one of Thomson’s photographic plates showing the partial parabola due to the heavy isotope of neon, 22
Ne.
(Reproduced from “Mass Spectra and Isotopes’ by F.W. Aston, by courtesy of Edward Arnold (Publishers) Ltd.).
B B force E E force
Note absence of focusing
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Summary of Historical Developments
Mass spectrometry developed from 19th century physics
o started with study of electrical discharges in evacuted tubes -Crookes tube
o cathode rays stream from cathode, form shadow of anode when they pass it and hit tube wall
and cause fluorescence--Goldstein
o J. J. Thomson discovered the nature of. cathode rays and measured their e/m ratios (cf. modern
CR tubes)
o W. Wien discovered the existence of positively charged ions, 1898
o Thomson built an apparatus to study and measure the m/e values of the “corpusules” which
make up the positive rays
o Aston demonstrated (1912) the existence of isotopes.
o Instruments capable of high resolution and higher mass measurement accuracy allowed the
natural abundance; and the mass defects of the isotopes to be measured.
o Early applications in chemistry included bond energies, ionization energies and other
thermochemical determinations.
o 1940, chemical (viz molecular) analysis began (ca. 1940) with the use of mass spectrometric
fragmentation patterns to characterize petroleum distillates.
Mass spectrometry development (through 1950):
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Mass spectrometry has Spread by Discipline as illustrated:
:
Thomson scanned the magnetic field and used electrical detection to record the first mass
spectra of which a 1912 example is shown:
Photograph of one of Thomson’s photographic plate showing the partially resolved parabola due to the heavy
isotope of Neon, 23
Ne, together with parabolas for other ions. Thomson, JJ. (1913). Rays of Positive Electricity and
Their Applications to Chemical Analysis, London, Longmans, Green & Co., p114
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In summary
Thomson Discovered isotopes, recorded first mass spectra, measured e/m of electron
Thomson observed molecular ions, isotopic ions, multiply charged ions, negatively charged ions,
products of charge exchange and other high energy collision processes as well as observing
ion/molecule reaction products (eg H3
+
) at low energy. Incipient in Thomson’s work was organic
analysis, thermochemistry, mixture analysis and collisional dissociation. In 1913 Thomson urged
“... especially chemists, to try this method of analysis. I feel sure that there are many problems in
Chemistry which could be tad led with far greater ease by this than any other method. The
method is surprisingly sensitive - more so than that of Spectrum Analysis, requires infinitismal
amounts of material, and does not require this to be specially purified: the technique is not
difficult...”
Aston Introduced focusing and measured mass defects of the elements with electrical
deflection (“mass spectrograph”)
Dempster Used focusing and measured accurate isotopic abundances (“mass spectrometer”)
Nier developed the El ion source, double focusing using a combination of sectors for high
resolution, and separated and collected 235U. (1930’s) In the early 90’s he was doing lunar and
planetary MS.
Lawrence converted Berkeley cyclotron to a MS, collected 5uA U+
beams in 1941. A year later
1 mA beams were being made in Calutrons at Oak Ridge -- Instruments that were two stories
high and operated in banks, 100 yards long.
Condon of Air Force “blue Book” fame and the Frank-Condon principle,discovered metastable
ions (1945), long after collision induced dissociation had been studied by Thomson, Aston and
Smythe.
von Ardenne Introduced negative ion MS with has “elektronenanlagerung” experiments in the
fifties and sixties.
Washburn was one of the people responsible for the first practical application in chemistry, the
analysis of hydrocarbon types in petroleum refining, a method of quantitative analysis which
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preceded GC (1940). Brewster of this department operated the first such Instrument at Arco,
Philadelphia, in 1946.
The development of commercial “organic” instruments for the high resolution mass
spectrometry followed. It was initiated by Beynon. Systematic studies of organic
compound fragmentation were begun in the fifties by McLafferty. Applications of mass
spectrometry to natural products (alkaloids) begun in the late fifties (Djerassi and
Biemann), first biological compounds studied. Intensive, peptides were examined by
McLafferty and Biemann soon after this, in the 1960’s.
Some trends in the subject at the moment
1. Biomolecules and higher molecular weight compounds, including non-covalent complexes.
2. Relationship between structures in solution and in the ionic environment
3. Sensitive, precise and universal elemental analysis (ICP and glow discharge MS).
4. Organic reactivity - viz, ion/molecule reactions - under thermalized conditions
5. Laser MS - REMPI, ir based excitation and ionization, etc
6. Proteome and automated sequencing
7. Structures of elusive neutral and ionic species
8. Metal ion chemistry and catalysis
9. Ambient ionization methods
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Appendix to Lecture 1: Collected Data & Definitions
Some from ORGANIC STRUCTURALSPECTROSCOPY
JOSEPH B. LAMBERT, Northwestern University
HERBERT F. SHURVELL , Queen’s University
DAVID A. LIGHTNER, University of Nevada at Reno
R. GRAHAM COOKS, Purdue University
Prentice Hall, Upper Saddle River, New Jersey 07458
Conversion Factors in Mass Spectrometry
Charge 1 electronic charge = 1.6 x 10-19
coulomb
Current 1 ion s-1
= 1.60 x 10-19
A
Energy 1 eV= 23.06 kcal mol-1
; 1 kcal mol-1
= 4.18 kJ mol-1
;
1 eV = 96.4 kJ mol-1
Mass 1 Da =1.66 x 10-24
g
Pressure 1 torr = 133 Pascal = 1 mm Hg = 1.33 mbar = 3.2 x1019
molecules cm-3
Rate constant
Unimolecular s-1
Bimolecular 1 liter mol-1
s-1
= 2 x 10-21
cm-3
molecule-1
s-1
Velocity Particle of 1 Da accelerated to 1 eV = 1.1 X 10-6
cm s-1
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Ionization Modes/Techniques
API Atmospheric Pressure Ionization
CI Chemical Ionization
DCI Direct Chemical Ionization
DESI Desorption Electrospray Ionization
DI Desorption Ionization
ECNCI Electron Capture Negative Chemical Ionization
EH Electrohydrodynamic Ionization
ES Electrospray
ESI Electrospray Ionization
EI Electron Impact
FAB Fast Atom Bombardment
FD Field Desorption
FI Field Ionization
GD Glow Discharge
LD Laser Desorption
MALDI Matrix-Assisted Laser Desorption Ionization
MPI Multi-Photon Ionization
NCI Negative Chemical Ionization
MCI Negative Ion Chemical Ionization
PD Plasma Desorption
PI Photo Ionization
REMPI Resonance Enhanced Multi-Photon Ionization
SIMS Secondary Ion Mass Spectrometry
TS(P) Thermospray
SI Surface Ionization
SSI Spark Source Ionization
TI Thermal Ionization
Fields/Analyzers]Instruments
B Magnetic Sector
E Electric Sector
ICR Ion Cyclotron Resonance
Q Quadrupole
q Radio Frequency (rf) Only Quadrupole
T Time
TOF Time of flight
Trap Ion Trap
V Voltage
EB Forward geometry, electric sector followed by magnetic sector, used for double
focusing.
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BE Reverse geometry, usually decoupled (ie not used in double focusing mode) to
allow for MS/MS, usually MIKES.
BEQQ A hybrid configuration consisting of a magnetic sector, electric sector, and
two quadrupoles.
EBE Usually a high resolution region followed by los r solution MS/MS.
EBEB or BEBE A double focusing, double focusing (4 sector) instrument.
FTICR Fourier Transform Ion Cyclotron Resonance
FTMS Fourier Transform Mass Spectrometer (same as FTICR)
ITMS Ion Trap Mass Spectrometer
MIKES Mass Analyzed Ion Kinetic Energy Spectrometer, BE geometry
TOF Time of Flight Mass Spectrometer
QQQ A triple quadrupole mass spectrometer
Scanning Modes
Product Scan A scan of the product distribution from a single mass precursor.
(a.k.a. Daughter Scan)
Parent Scan A scan of all parents which produce a particular mass ion.
Neutral Gain A scan of all parents which pick up a particular mass upon
collision.
Neutral Loss A scan of all parents which lose a particular mass.
Linked Scan A scan with two or more analyzers scanning simultaneously with
a fixed relationship.
B/E Magnet to electric sector ratio is held constant, produces daughter scans
in double focusing instruments.
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B2
/E Magnet to electric sector ration is held constant, produces a parent scan.
SIM Single Ion Monitoring or Selected Ion Monitoring.
SRM Single Reaction Monitoring or Selected Reaction Monitoring.
MIM Multiple Ion Monitoring
MRM Multiple Reaction Monitoring
V Accelerating voltage scan (used in sector instruments for parent scans)
Collisions/Reactions/Ion Activation Methods
Associative Collisions leading to product ions of higher mass than reactant ion.
Charge Exchange A process whereby one particle transfers an electron to another.
Charge Inversion Usually the removal of 2 e to produce a positive ion from negative ion
Charge Stripping Production of a M(m)+ ion from an Mm ion. (Usually the production of a
doubly charged positive ion from a singly charged positive ion.)
Dissociative Collision Collisions leading to product ions of lower mass than reactant ion.
Elastic Collision A collision in which kinetic energy and internal energy is conserved.
Inelastic Collision A collision in which kinetic energy and internal energy is not conserved.
Reactive A subset of inelastic collisions in which a reaction takes place
ARMS Angle Resolved Mass Spectrometry
CAD Collisionally Activated Dissociation (CA collisional Activation)
CID Collision Induced Dissociation
EID Electron Induced Dissociation
EIEIO Electron Induced Excitation of Ions from Organics (Same as EID)
ERMS Energy Resolved Mass Spectrometry
I/M Ion/Molecule (reaction or collision)
I/S Ion/Surface (reaction or collision)
NRMS Neutralization Reionization Mass Spectrometry
PD Photodissociation or Photo Detachment
Methodology
CE-MS Capillary Electrophoresis Mass Spectrometry
CZE-MS Capillary Zone Electrophoresis Mass Spectrometry
FA Flowing Afterglow
FIK Field Ionization Kinetics
GC-MS Gas Chromatography Mass Spectrometry
ICP-MS Inductively Coupled Plasma Mass Spectrometry
LC-MS Liquid Chromatography Mass Spectrometry
MIKES Mass Analyzed Ion Kinetic Energy Spectrometry
MS/MS Tandem mass spectrometry
MSn
n stages of mass analysis
PEPICO Photo Electron Photo Ionization Coincidence
PIPECO Photo Ionization Photo Electron Coincidence
SFC-MS Supercritical Fluid Chromatography Mass Spectrometry
General
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AMS Accelerator Mass Spectrometry
APCI Atmospheric Pressure Chemical Ionization
ATD Arrival Time Distribution
CI Chemical Ionization
CID Collision-Induced Dissociation
CZE/MS Capillary Zone Electrophoresis/Mass Spectrometry
DI Desorption Ionization
EA Electron Affinity
EI Electron Impact (Ionization)
ES Electrospray
FAB Fast Atom Bombardment
FD Field Desorption
FT-ICR Fourier Transform Ion Cyclotron Resonance
GC/MS Gas Chromatography/Mass Spectrometry
GD Glow Discharge
ICP Inductively Coupled Plasma
IDMS Isotope Dilution Mass Spectrometry
IE Ionization Energy
IRMS Isotope Ratio Mass Spectrometry
ITR Integrating Transient Recording
LC/MS Liquid Chromatography/Mass Spectrometry
LD Laser Desorption
MAGIC Monodisperse aerosol generator for introduction from liquid chromatography
MALDI Matrix Assisted Laser Desorption Ionization
MS/MS Mass Spectrometry/Mass Spectrometry
MW Molecular Weight
NCI Negative Ion Chemical Ionization
PA Proton Affinity
PD Plasma Desorption
PIPECO Photoionization Photoelectron Coincidence Spectroscopy
RBS Rutherford Backscattering Spectroscopy
RF Radio Frequency
RIMS Resonance Ionization Mass Spectrometry
SI Spray Ionization
SID Surface Induced Dissociation
SIM Selected Ion Monitoring
SIMS Secondary Ion Mass Spectrometry.
TDC Time-to-digital-converter
TOF Time-of-flight
TPD Temperature Programmed Desorption
TS Thermospray
Definitions
Appearance energy: endothemicity of process: AB+ e-
A+
+ B + 2e-
Atmospheric pressure chemical ionization: a variant of chemical ionization performed at
atmospheric pressure.
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Base peak: the most intense peak in the mass spectrum, hence 100% relative abundance.
Breakdown curve: plot of ion abundance vs. ion internal energy (normalized at each energy);
shows mass spectrum as a function of internal energy.
Charge exchange: process whereby one particle transfers an electron to another (such as M + A+.
M+.
+ A); used in chemical ionization.
Chemical ionization: method in which neutral molecules are ionized by ion-molecule reactions
to generate an ionized form of the molecule at a pressure of about 1 torr. Collision-induced
dissociation: process whereby a mass-selected ion is excited and caused to fragment by collision
with a target gas, especially in MS—MS.
Cyclotron motion: cyclic rotation of an ion in a fixed magnetic field.
Desorption ionization: method for ionizing nonvolatile solid samples, in which molecules are
subjected to the impact of Energetic particles or photon beams.
Distonic ion: radical ion in which the charge and radical sites are formally located on different
atoms in the molecule.
Distribution of internal energy (P[]): analogue of Boltzmann distribution for molecules not in
thermal equilibrium.
Double focusing: a combination of direction and velocity focusing in sector instruments, used to
achieve high resolution. Strictly, the proper term is “second-order double focusing” and it is
related to coefficients of the direction and energy terms of the equation of motion for the ions
Electron affinity: enthalpy change for the process: M-
M + e-
.
Electron capture: ionization process in which a molecule or atom captures a thermal energy
electron, typically in a CI source, and generates the molecular radical anion, M-.
. Electron
impact: ionization method in which molecules are ionized directly by energetic electrons
(usually 70 eV) at low pressure (10-5
torr).
Electrospray ionization: method used to ionize samples from solution by combination of electric
field, heat, and pneumatic force.
Even-electron ion: ion with even number of electrons, commonly with a closed-shell electronic
configuration.
Fragmentation pattern: set of reactions leading from the molecular ion to fragment ions.
Fragment ion: ion generated by fragmentation not directly by ionization of a neutral molecule.
Gas chromatography—mass spectrometry (GC—MS): combined technique for mixture analysis,
in which the separated GC components are passed continuously into the MS. Glow discharge:
method used to ionize solid samples for elemental analysis by applying an electric field to create
an energetic plasma.
Inductively coupled plasma: method used to ionize solution samples for elemental analysis by a
plasma.
Inelastic collision: collision in which internal energy is not conserved.
Ion internal energy: total electronic, vibrational, and internal rotational energy, referenced to
ground state of the ion.
Ion source: device used to generate sample ions by electron impact, chemical ionization, etc.
Ionization energy (IE): minimum energy required to remove an electron from a molecule;
endothermicity of the process: M M+.
.
Isobaric peak (ion): peaks or ions of the same nominal (integral) mass, but different exact mass
and composition.
Isotopic peak (ion): peaks or ions due to other isotopes of the same chemical, but different
isotopic composition.
Used for MS Short Course at Tsinghua
by R. Graham Cooks, Hao Chen, Zheng Ouyang, Andy Tao, Yu Xia and Lingjun Li
19. 19
19
Liquid chromatography—mass spectrometry (LC—MS): combined technique for mixture
analysis.
Magnetron motion: slow circular drift of an ion along a path of constant electrostatic potential;
magnetron motion occurs in ICR as a result of the crossed radial electric field
and axial magnetic field.
Mass resolving power: m/m, in which is ionic mass and m is the width of the mass
peak (typically taken as the full width at half-maximum mass spectral peak height).
Mass spectrum:- Plot of ion abundance vs. mass-to-charge ratio normalized to most
abundant ion.
Mass-to-charge ratio (m/z): Daltons/electronic charge.
Mathieu stability diagram: diagram showing the solutions to the Mathieu equation
that correspond to stable ion trajectories, displayed as a function of parameters related
to operating voltages, mass and charge of the trapped ions.
Matrix-assisted laser desorption ionization: method of ionization that uses laser irradiation of
solid analyte present in high dilution in a matrix.
Metastable ion: ion that fragments slowly after emergence from the ion source but before it
reaches the detector; in sector instruments, metastable ions give rise to signals that appear at
unique m/z values related to the parent and product ion masses.
Molecular ion: ion derived from the neutral molecule by loss or gain of an electron or other
simple unit, such as (M+H)+
, (M+Cl)-
, (M—H)-
. Ions formed by ESI and MALDI are usually
even-electron species such as [M + H] + or [M — H]- and should be referred to as the
‘protonated molecule’ Or ‘deprotonated molecule’ etc.
Molecular mass (Mr):Average molecular mass calculated by using the average atomic mass
of the individual elements (e.g. C=12.011; H = 1.008; N =14.007; O=15.999) Chemical average
molecular weight.
Monoisotopic molecular mass (Mi): calculated by using the atomic mass of the most abundant
isotope of each atom (C=12.00000, H=1.007825, O=15.9949)
Multiply charged ion: ion bearing more than a single charge and having a correspondingly
reduced mass-to-charge ratio.
Neutral loss scan: an MS-MS experiment that records all parent ions that lose a particular
neutral fragment.
Odd-electron ion: see Radical ion.
Parent ion (m1
+
): any ion (including negatively and doubly charged ions) that fragments to
product ions.
Parent ion scan: an MS-MS experiment that records all parent ions that produce a particular
product ion.
Photodissociation: process in which an ion fragments by absorption of one or more photons
Product ion (m2
+
): ion generated by fragmentation of any parent ion.
Product ion scan: an MS-MS experiment that records all product ions derived from a single
parent ion.
Proton affinity: enthalpy change for the process: MH+
M + H+
.
Radical ion (odd-electron ion): charged, open-shell molecule with at least one unpaired electron.
Relative abundance (RA): abundance normalized relative to the base peak.
Resolving power (mass): ability to distinguish between ions differing slightly in mass-to-charge
may be characterized by giving the peak width, measured in mass units, expressed as a function
of mass, for a specific point on the peak,usually50% or 5% of the maximum peak height
Used for MS Short Course at Tsinghua
by R. Graham Cooks, Hao Chen, Zheng Ouyang, Andy Tao, Yu Xia and Lingjun Li
20. 20
20
Resolution: 10% valley definition, m/Δm two peaks of equal height in a mass spectrum at
masses m and m-Δm separated by a valley that at its lowest point is just 10% of the height of
either peak. Then the resolution (10% valley definition) is m/Δm. It is usually a function of m,
and therefore m/Δm should be given for a number of values of m.
Secondary ion mass spectrometry: mass spectrometry based on analysis of particles emitted
when a surface, usually a solid although sometimes a liquid, is bombarded by energetic ( keV)
primary particles (such as Ar+
and Cs+
).
Selected ion monitoring (SIM): experiment in which a mass analyzer is used to detect one or a
few ions as a function of time.
Spray ionization: methods used to ionize liquid samples directly by electrical, thermal, and
pneumatic energy, by means of a spray of fine droplets.
Surface-induced dissociation: process whereby a mass-selected ion is excited and caused to
fragment by collision with a target surface.
Tandem mass spectrometry (MS-MS): two-stage mass analysis experiment; used to study the
chemistry of selected ions or individual components in mixtures.
Thermal ionization: method whereby solid samples are ionized on the hot surface of a metal
filament.
Unimolecular rate constant (k[]): the rate constant k (in s-1
) is dependent on the internal energy
(, always shown explicitly) at which it is measured.
Thermochemistry
AE Appearance Energy
AP Appearance Potential
EA Electron Affinity
IE Ionization Energy
IP Ionization Potential
PA Proton Affinity
GB Gas Phase Basicity
GA Gas Phase Acidity (more commonly referred to as –Gacid)
RE Recombination Energy
HA Hydride Affinity
Some Ionization Energies
Element IE (eV) Compound IE (eV) Compound IE (eV)
He 24.6
Ne 21.6
Ar 15.8
Kr 14.0
Xe 12.1
H 13.6
C 11.2
N 14.5
O 13.6
F 17.4
HF 16.0
H2 15.4
CO2 13.8
CH4 12.5
H2O 12.6
O2 12.1
C2H2 11.4
CH3OH 10.9
CH3CO2H 10.7
n-Butane 10.5
H2S 10.4
NH3 10.2
(CH3)2C=O 9.7
(C2H5)2O 9.5
NO 9.26
Benzene 9.25
Pyridine 9.3
n-Propylamine 8.8
Nitrobenzene 8.7
Phenol 8.5
Aniline 7.7
Used for MS Short Course at Tsinghua
by R. Graham Cooks, Hao Chen, Zheng Ouyang, Andy Tao, Yu Xia and Lingjun Li
21. 21
21
Some Values of Proton Affinites
GLOSSARY - THERMODYNAMICS
adiabatic
No heat transferred between system and surroundings; for a chemical reaction (ionization,
dissociation, etc) this usually means the lowest energy product state is formed (eg. adiabatic
dissociation, adiabatic ionization energy).
vertical
Used to describe an electronic transition or ionization (neutralization) occurring at the Born-
Oppenheimer limit, i.e., with no change in nuclear coordinates of the molecule (eg. vertical
excitation, vertical ionization energy).
ionization energy (IE)
Also ionization energy (IE), sometimes referred to as recombination energy (RE); energy
required to remove an electron: M —> M+
+ e; strictly refers to 0 K; may be adiabatic or vertical.
Used for MS Short Course at Tsinghua
by R. Graham Cooks, Hao Chen, Zheng Ouyang, Andy Tao, Yu Xia and Lingjun Li
22. 22
22
electron affinity (EA)
Energy required to remove an electron from a negative ion: M-.
—> M + e; strictly refers to 0 K;
may be adiabatic or vertical.
Heat of formation of a positive ion (Hf
o
(M+
))
Sum of the heat of formation of a neutral molecule and its adiabatic ionization potential:
Hf
o
(M+
) = Hf
o
(M) + IP(K) (at 0 K)
Heat of formation of a negative ion (Hf
o
(M-
))
Difference between the heat of formation of a neutral molecule and its adiabatic electron affinity:
Hf
o
(M-
) = Hf
o
(M) - EA(M)
Appearance energy (AE)
Also appearance potential (AP); mass spectrometrically determined amount of energy required to
form an ion from a neutral molecule: AB A+
+ B + e or e + AB A-
+ B
Bond Dissociation Energy
BDE, D[A—B], D[A+
—B-
], etc.
Energy required to break a bond in a molecule; may be homolytic or heterolytic.
Do
o
[A—B] or Do[A—B] at 0 K D°298[A—B] or D298[A—B] at 298K
bond dissociation enthalpy
DH[A—B], DH°[A—B] DH°298[A-B], etc.
Enthalpy of homolytic or heterolytic bond cleavage; usually differs from bond energy by RT.
Proton Affinity (PA)
Enthalpy change for the reaction:
BH+
B + H+
; usually pertains to 298K
Gas thase Basicity (GB)
Free energy change for the reaction: BH+
B + H+
GB = PA -TSioniz
Gas phase Acidity (Gacid or Hacid)
Free energy or enthalpy change, respectively, for the reaction:
AH A-
+ H+
; enthalpy change pertains to 298K
Hacid(AH) = PA(A-
); Gacid=Hacid - TSacid
methyl cation affinity (MCA)
Enthalpy change for the reaction:
BCH3
+
B + CH3
+
; usually pertains to 298K
hydride (ion) affinity (HA. HIA)
Enthalpy change (298K) for the reaction
AH A + H-
or RH R+
+H-
Used for MS Short Course at Tsinghua
by R. Graham Cooks, Hao Chen, Zheng Ouyang, Andy Tao, Yu Xia and Lingjun Li