Here we illustrate the classic Ginzburg-Landau-de Gennes theory of isotropic nematic phase transition and show how fluctuations as well as deterministic kinetics can lead to phase equilibria.
A seminar presented in "CompFlu16" at IIIT Hyderabad in December 2016 on homogeneous nucleation kinetics in anisotropic liquids using a Landau-de Gennes field theoretic study.
HEATED WIND PARTICLE’S BEHAVIOURAL STUDY BY THE CONTINUOUS WAVELET TRANSFORM ...cscpconf
Nowadays Continuous Wavelet Transform (CWT) as well as Fractal analysis is generally used for the Signal and Image processing application purpose. Our current work extends the field of application in case of CWT as well as Fractal analysis by applying it in case of the agitated wind particle’s behavioral study. In this current work in case of the agitated wind particle, we have mathematically showed that the wind particle’s movement exhibits the “Uncorrelated” characteristics during the convectional flow of it. It is also demonstrated here by the Continuous Wavelet Transform (CWT) as well as the Fractal analysis with matlab 7.12 version
A seminar presented in "CompFlu16" at IIIT Hyderabad in December 2016 on homogeneous nucleation kinetics in anisotropic liquids using a Landau-de Gennes field theoretic study.
HEATED WIND PARTICLE’S BEHAVIOURAL STUDY BY THE CONTINUOUS WAVELET TRANSFORM ...cscpconf
Nowadays Continuous Wavelet Transform (CWT) as well as Fractal analysis is generally used for the Signal and Image processing application purpose. Our current work extends the field of application in case of CWT as well as Fractal analysis by applying it in case of the agitated wind particle’s behavioral study. In this current work in case of the agitated wind particle, we have mathematically showed that the wind particle’s movement exhibits the “Uncorrelated” characteristics during the convectional flow of it. It is also demonstrated here by the Continuous Wavelet Transform (CWT) as well as the Fractal analysis with matlab 7.12 version
First-order cosmological perturbations produced by point-like masses: all sca...Maxim Eingorn
This presentation based on the paper http://arxiv.org/abs/1509.03835 was made at Institute of Cosmology, Tufts University, on November 12, 2015. The abstract follows:
In the framework of the concordance cosmological model the first-order scalar and vector perturbations of the homogeneous background are derived without any supplementary approximations in addition to the weak gravitational field limit. The sources of these perturbations (inhomogeneities) are presented in the discrete form of a system of separate point-like gravitating masses. The obtained expressions for the metric corrections are valid at all (sub-horizon and super-horizon) scales and converge in all points except the locations of the sources, and their average values are zero (thus, first-order backreaction effects are absent). Both the Minkowski background limit and the Newtonian cosmological approximation are reached under certain well-defined conditions. An important feature of the velocity-independent part of the scalar perturbation is revealed: up to an additive constant it represents a sum of Yukawa potentials produced by inhomogeneities with the same finite time-dependent Yukawa interaction range. The suggesting itself connection between this range and the homogeneity scale is briefly discussed along with other possible physical implications.
(If visualization is slow, please try downloading the file.)
Part 2 of a tutorial given in the Brazilian Physical Society meeting, ENFMC. Abstract: Density-functional theory (DFT) was developed 50 years ago, connecting fundamental quantum methods from early days of quantum mechanics to our days of computer-powered science. Today DFT is the most widely used method in electronic structure calculations. It helps moving forward materials sciences from a single atom to nanoclusters and biomolecules, connecting solid-state, quantum chemistry, atomic and molecular physics, biophysics and beyond. In this tutorial, I will try to clarify this pathway under a historical view, presenting the DFT pillars and its building blocks, namely, the Hohenberg-Kohn theorem, the Kohn-Sham scheme, the local density approximation (LDA) and generalized gradient approximation (GGA). I would like to open the black box misconception of the method, and present a more pedagogical and solid perspective on DFT.
ALL-SCALE cosmological perturbations and SCREENING OF GRAVITY in inhomogeneou...Maxim Eingorn
M. Eingorn, First-order cosmological perturbations engendered by point-like masses, ApJ 825 (2016) 84: http://iopscience.iop.org/article/10.3847/0004-637X/825/2/84
In the framework of the concordance cosmological model, the first-order scalar and vector perturbations of the homogeneous background are derived in the weak gravitational field limit without any supplementary approximations. The sources of these perturbations (inhomogeneities) are presented in the discrete form of a system of separate point-like gravitating masses. The expressions found for the metric corrections are valid at all (sub-horizon and super-horizon) scales and converge at all points except at the locations of the sources. The average values of these metric corrections are zero (thus, first-order backreaction effects are absent). Both the Minkowski background limit and the Newtonian cosmological approximation are reached under certain well-defined conditions. An important feature of the velocity-independent part of the scalar perturbation is revealed: up to an additive constant, this part represents a sum of Yukawa potentials produced by inhomogeneities with the same finite time-dependent Yukawa interaction range. The suggested connection between this range and the homogeneity scale is briefly discussed along with other possible physical implications.
On Approach of Estimation Time Scales of Relaxation of Concentration of Charg...Zac Darcy
In this paper we generalized recently introduced approach for estimation of time scales of mass transport.
The approach have been illustrated by estimation of time scales of relaxation of concentrations of charge
carriers in high-doped semiconductor. Diffusion coefficients and mobility of charge carriers and electric
field strength in semiconductor could be arbitrary functions of coordinate.
This talk was presented at the 22nd International conference on Surface Modification Technology, 22-24 September 2008, in Trollhattan, Sweden. It describes some recent computational research work carried out using molecular dynamics methods to calculate physical properties, including viscosity, of liquid nickel over a wide temperature range.
The all-electron GW method based on WIEN2k: Implementation and applications.ABDERRAHMANE REGGAD
The all-electron GW method based on WIEN2k:
Implementation and applications.
Ricardo I. G´omez-Abal
Fritz-Haber-Institut of the Max-Planck-Society
Faradayweg 4-6, D-14195, Berlin, Germany
15th. WIEN2k-Workshop
March, 29th. 2008
An approach to decrease dimentions of logicalijcsa
In this paper we consider manufacturing logical elements with function AND-NOT based on bipolar transistors.Based on recently considered approach to decrease dimensions of solid state electronic devices with the same time increasing of their performance we introduce an approach to decrease dimensions of transistors and p-n-junctions, which became a part of the logical element. Framework the approach a heterostructure
with required configuration should be manufactured. After the manufacture required areas of the heterostructures should be doped by diffusion or ion implantation. The doping should be finished by optimized annealing of dopant and/or radiation defects.
Sinc collocation linked with finite differences for Korteweg-de Vries Fraction...IJECEIAES
A novel numerical method is proposed for Korteweg-de Vries Fractional Equation. The fractional derivatives are described based on the Caputo sense. We construct the solution using different approach, that is based on using collocation techniques. The method combining a finite difference approach in the time-fractional direction, and the Sinc-Collocation in the space direction, where the derivatives are replaced by the necessary matrices, and a system of algebraic equations is obtained to approximate solution of the problem. The numerical results are shown to demonstrate the efficiency of the newly proposed method. Easy and economical implementation is the strength of this method.
Enhanced Process / Product Understanding and Control in Freeze Drying by usin...BTL
This presentation gives an overview into how advanced techniques such as manometric temperature measurement (MTM) and ice nucleation control can be used to enhance understanding of the freeze drying of your product, and provide additional control of its behaviour throughout the freeze drying cycle. This presentation was originally presented at Emerging Technologies in Freeze Drying, Stirling, 3rd April 2012.
First-order cosmological perturbations produced by point-like masses: all sca...Maxim Eingorn
This presentation based on the paper http://arxiv.org/abs/1509.03835 was made at Institute of Cosmology, Tufts University, on November 12, 2015. The abstract follows:
In the framework of the concordance cosmological model the first-order scalar and vector perturbations of the homogeneous background are derived without any supplementary approximations in addition to the weak gravitational field limit. The sources of these perturbations (inhomogeneities) are presented in the discrete form of a system of separate point-like gravitating masses. The obtained expressions for the metric corrections are valid at all (sub-horizon and super-horizon) scales and converge in all points except the locations of the sources, and their average values are zero (thus, first-order backreaction effects are absent). Both the Minkowski background limit and the Newtonian cosmological approximation are reached under certain well-defined conditions. An important feature of the velocity-independent part of the scalar perturbation is revealed: up to an additive constant it represents a sum of Yukawa potentials produced by inhomogeneities with the same finite time-dependent Yukawa interaction range. The suggesting itself connection between this range and the homogeneity scale is briefly discussed along with other possible physical implications.
(If visualization is slow, please try downloading the file.)
Part 2 of a tutorial given in the Brazilian Physical Society meeting, ENFMC. Abstract: Density-functional theory (DFT) was developed 50 years ago, connecting fundamental quantum methods from early days of quantum mechanics to our days of computer-powered science. Today DFT is the most widely used method in electronic structure calculations. It helps moving forward materials sciences from a single atom to nanoclusters and biomolecules, connecting solid-state, quantum chemistry, atomic and molecular physics, biophysics and beyond. In this tutorial, I will try to clarify this pathway under a historical view, presenting the DFT pillars and its building blocks, namely, the Hohenberg-Kohn theorem, the Kohn-Sham scheme, the local density approximation (LDA) and generalized gradient approximation (GGA). I would like to open the black box misconception of the method, and present a more pedagogical and solid perspective on DFT.
ALL-SCALE cosmological perturbations and SCREENING OF GRAVITY in inhomogeneou...Maxim Eingorn
M. Eingorn, First-order cosmological perturbations engendered by point-like masses, ApJ 825 (2016) 84: http://iopscience.iop.org/article/10.3847/0004-637X/825/2/84
In the framework of the concordance cosmological model, the first-order scalar and vector perturbations of the homogeneous background are derived in the weak gravitational field limit without any supplementary approximations. The sources of these perturbations (inhomogeneities) are presented in the discrete form of a system of separate point-like gravitating masses. The expressions found for the metric corrections are valid at all (sub-horizon and super-horizon) scales and converge at all points except at the locations of the sources. The average values of these metric corrections are zero (thus, first-order backreaction effects are absent). Both the Minkowski background limit and the Newtonian cosmological approximation are reached under certain well-defined conditions. An important feature of the velocity-independent part of the scalar perturbation is revealed: up to an additive constant, this part represents a sum of Yukawa potentials produced by inhomogeneities with the same finite time-dependent Yukawa interaction range. The suggested connection between this range and the homogeneity scale is briefly discussed along with other possible physical implications.
On Approach of Estimation Time Scales of Relaxation of Concentration of Charg...Zac Darcy
In this paper we generalized recently introduced approach for estimation of time scales of mass transport.
The approach have been illustrated by estimation of time scales of relaxation of concentrations of charge
carriers in high-doped semiconductor. Diffusion coefficients and mobility of charge carriers and electric
field strength in semiconductor could be arbitrary functions of coordinate.
This talk was presented at the 22nd International conference on Surface Modification Technology, 22-24 September 2008, in Trollhattan, Sweden. It describes some recent computational research work carried out using molecular dynamics methods to calculate physical properties, including viscosity, of liquid nickel over a wide temperature range.
The all-electron GW method based on WIEN2k: Implementation and applications.ABDERRAHMANE REGGAD
The all-electron GW method based on WIEN2k:
Implementation and applications.
Ricardo I. G´omez-Abal
Fritz-Haber-Institut of the Max-Planck-Society
Faradayweg 4-6, D-14195, Berlin, Germany
15th. WIEN2k-Workshop
March, 29th. 2008
An approach to decrease dimentions of logicalijcsa
In this paper we consider manufacturing logical elements with function AND-NOT based on bipolar transistors.Based on recently considered approach to decrease dimensions of solid state electronic devices with the same time increasing of their performance we introduce an approach to decrease dimensions of transistors and p-n-junctions, which became a part of the logical element. Framework the approach a heterostructure
with required configuration should be manufactured. After the manufacture required areas of the heterostructures should be doped by diffusion or ion implantation. The doping should be finished by optimized annealing of dopant and/or radiation defects.
Sinc collocation linked with finite differences for Korteweg-de Vries Fraction...IJECEIAES
A novel numerical method is proposed for Korteweg-de Vries Fractional Equation. The fractional derivatives are described based on the Caputo sense. We construct the solution using different approach, that is based on using collocation techniques. The method combining a finite difference approach in the time-fractional direction, and the Sinc-Collocation in the space direction, where the derivatives are replaced by the necessary matrices, and a system of algebraic equations is obtained to approximate solution of the problem. The numerical results are shown to demonstrate the efficiency of the newly proposed method. Easy and economical implementation is the strength of this method.
Enhanced Process / Product Understanding and Control in Freeze Drying by usin...BTL
This presentation gives an overview into how advanced techniques such as manometric temperature measurement (MTM) and ice nucleation control can be used to enhance understanding of the freeze drying of your product, and provide additional control of its behaviour throughout the freeze drying cycle. This presentation was originally presented at Emerging Technologies in Freeze Drying, Stirling, 3rd April 2012.
Definition of solidification, Cooling Curves of metal and alloy, Nucleation and Crystal Growth.
Reference: Material Science and Engineering, William Callister
Particle and field based methods for complex fluids and soft materialsAmit Bhattacharjee
Presentation about various problems solved at space and time in our beautiful planet at IISER Mohali. Discusses on problems on atomistic to mesoscopic to macroscopic domain, so as time ranging from femto-pico-micro-mili to seconds.
Natural Convection and Entropy Generation in Γ-Shaped Enclosure Using Lattice...A Behzadmehr
This work presents a numerical analysis of entropy generation in Γ-Shaped enclosure that was submitted to the natural convection process using a simple thermal lattice Boltzmann method (TLBM) with the Boussinesq approximation. A 2D thermal lattice Boltzmann method with 9 velocities, D2Q9, is used to solve the thermal flow problem. The simulations are performed at a constant Prandtl number (Pr = 0.71) and Rayleigh numbers ranging from 103 to 106 at the macroscopic scale (Kn = 10-4). In every case, an appropriate value of the characteristic velocity is chosen using a simple model based on the kinetic theory. By considering the obtained dimensionless velocity and temperature values, the distributions of entropy generation due to heat transfer and fluid friction are determined. It is found that for an enclosure with high value of Rayleigh number (i.e., Ra=105), the total entropy generation due to fluid friction and total Nu number increases with decreasing the aspect ratio.
Shear reversal simulations of a dense glass -forming supercooled colloidal melt: Rheology, microstructure and puzzles. Using non-equilibrium MD technique in nano to micro meter lengthscale and microsecond timescale, we show how "Bauschinger effect" can be realized in dense colloids.
Analytical, Numerical and Experimental Validation of Coil Voltage in Inductio...ijeljournal
This paper presents, mathematical model of induction heating process by using analytical and numerical
methods. In analytical method, series equivalent circuit (SEC) is used to represent induction coil and work
piece. Induction coil and workpiece parameters (resistance and reactance) are calculated by standard
formulas along with Nagaoka correction factors and Bessel functions. In Numerical method, magnetic
vector potential formulation is done and finite element method (FEM) is used to solve the field equations.
Analytically and numerically computed parameters such as equivalent coil resistance, reactance, coil
voltage, work piece power are compared and found that they are in good agreement. Analytically and
numerically obtained coil voltages at different frequencies are validated by experimental results. This
mathematical model is useful for coil design and optimization of induction heating process.
Analytical, Numerical and Experimental Validation of Coil Voltage in Inductio...ijujournal
This paper presents, mathematical model of induction heating process by using analytical and numerical methods. In analytical method, series equivalent circuit (SEC) is used to represent induction coil and work piece. Induction coil and workpiece parameters (resistance and reactance) are calculated by standard formulas along with Nagaoka correction factors and Bessel functions. In Numerical method, magnetic
vector potential formulation is done and finite element method (FEM) is used to solve the field equations. Analytically and numerically computed parameters such as equivalent coil resistance, reactance, coil voltage, work piece power are compared and found that they are in good agreement. Analytically and
numerically obtained coil voltages at different frequencies are validated by experimental results. This mathematical model is useful for coil design and optimization of induction heating process.
Analytical, Numerical and Experimental Validation of Coil Voltage in Inductio...ijeljournal
This paper presents, mathematical model of induction heating process by using analytical and numerical methods. In analytical method, series equivalent circuit (SEC) is used to represent induction coil and work piece. Induction coil and workpiece parameters (resistance and reactance) are calculated by standard formulas along with Nagaoka correction factors and Bessel functions. In Numerical method, magnetic vector potential formulation is done and finite element method (FEM) is used to solve the field equations. Analytically and numerically computed parameters such as equivalent coil resistance, reactance, coil voltage, work piece power are compared and found that they are in good agreement. Analytically and numerically obtained coil voltages at different frequencies are validated by experimental results. This mathematical model is useful for coil design and optimization of induction heating process.
Analytical, Numerical and Experimental Validation of Coil Voltage in Inductio...ijeljournal
This paper presents, mathematical model of induction heating process by using analytical and numerical methods. In analytical method, series equivalent circuit (SEC) is used to represent induction coil and work piece. Induction coil and workpiece parameters (resistance and reactance) are calculated by standard formulas along with Nagaoka correction factors and Bessel functions. In Numerical method, magnetic vector potential formulation is done and finite element method (FEM) is used to solve the field equations. Analytically and numerically computed parameters such as equivalent coil resistance, reactance, coil voltage, work piece power are compared and found that they are in good agreement. Analytically and numerically obtained coil voltages at different frequencies are validated by experimental results. This mathematical model is useful for coil design and optimization of induction heating process.
ANALYTICAL, NUMERICAL AND EXPERIMENTAL VALIDATION OF COIL VOLTAGE IN INDUCTIO...ijeljournal
This paper presents, mathematical model of induction heating process by using analytical and numerical
methods. In analytical method, series equivalent circuit (SEC) is used to represent induction coil and work
piece. Induction coil and workpiece parameters (resistance and reactance) are calculated by standard
formulas along with Nagaoka correction factors and Bessel functions. In Numerical method, magnetic
vector potential formulation is done and finite element method (FEM) is used to solve the field equations.
Analytically and numerically computed parameters such as equivalent coil resistance, reactance, coil
voltage, work piece power are compared and found that they are in good agreement. Analytically and
numerically obtained coil voltages at different frequencies are validated by experimental results. This
mathematical model is useful for coil design and optimization of induction heating process.
Similar to Kinetic pathways to the isotropic-nematic phase transformation: a mean field approach (20)
Richard's entangled aventures in wonderlandRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...University of Maribor
Slides from:
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Track: Artificial Intelligence
https://www.etran.rs/2024/en/home-english/
Deep Behavioral Phenotyping in Systems Neuroscience for Functional Atlasing a...Ana Luísa Pinho
Functional Magnetic Resonance Imaging (fMRI) provides means to characterize brain activations in response to behavior. However, cognitive neuroscience has been limited to group-level effects referring to the performance of specific tasks. To obtain the functional profile of elementary cognitive mechanisms, the combination of brain responses to many tasks is required. Yet, to date, both structural atlases and parcellation-based activations do not fully account for cognitive function and still present several limitations. Further, they do not adapt overall to individual characteristics. In this talk, I will give an account of deep-behavioral phenotyping strategies, namely data-driven methods in large task-fMRI datasets, to optimize functional brain-data collection and improve inference of effects-of-interest related to mental processes. Key to this approach is the employment of fast multi-functional paradigms rich on features that can be well parametrized and, consequently, facilitate the creation of psycho-physiological constructs to be modelled with imaging data. Particular emphasis will be given to music stimuli when studying high-order cognitive mechanisms, due to their ecological nature and quality to enable complex behavior compounded by discrete entities. I will also discuss how deep-behavioral phenotyping and individualized models applied to neuroimaging data can better account for the subject-specific organization of domain-general cognitive systems in the human brain. Finally, the accumulation of functional brain signatures brings the possibility to clarify relationships among tasks and create a univocal link between brain systems and mental functions through: (1) the development of ontologies proposing an organization of cognitive processes; and (2) brain-network taxonomies describing functional specialization. To this end, tools to improve commensurability in cognitive science are necessary, such as public repositories, ontology-based platforms and automated meta-analysis tools. I will thus discuss some brain-atlasing resources currently under development, and their applicability in cognitive as well as clinical neuroscience.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.
Kinetic pathways to the isotropic-nematic phase transformation: a mean field approach
1. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
Kinetic pathways to the isotropic-nematic
phase transformation: a mean field approach
Amit Kumar Bhattacharjee
Institute of Materialphysics in Space
Köln, Germany
February 21, 2012
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 1 / 31
2. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
Outline
1 Liquid crystals: another candidate in soft materials.
2 Motivation for a theory of nematics.
3 Computational approaches: complexity.
4 Kinetic pathways in equilibrium phase transition.
5 Invitation to a new direction in complex criterion.
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 2 / 31
3. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
Liquid crystals
States of matter ⇒ solid, liquid, gas.
F = E − TS : hard matter (minimize E), soft
matter (maximize S).
Changes of Phase; order of transition (e.g. liquid
to solid, paramagnet to ferromagnet).
Multistage transition process (e.g. Nematic,
Smectic A-C, Cholesteric, Discotic, Coloumnar).
Necessity to study:
◮ Technological applications : elctro-optic display,
watches, temperature sensors etc.
◮ Physical interests : Statistical field theory, ideas
apply from Biophysics to Cosmology!
[Spindle formation in mitosis]
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 3 / 31
4. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
Nematic mesophases1
Consist of anisotropic molecules (e.g. rods,
discs), having long range orientational order
without translational order.
Uniaxial phase have rotational symmetry about
the direction of order, described through a
headless vector n: the director.
Biaxial phase have two directions of order,
described through two headless vectors: the
director n and the co-director l.
Isotropic-Nematic transition is weakly first order.
isotropic
nematic
1
de Gennes & Prost, The physics of liquid crystals (’93)
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 4 / 31
5. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
Nematic mesophases
LC sample in
crossed polarizer
Schlieren texture
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 5 / 31
6. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
Motivation
Topological defect entanglement in a nematic liquid crystal film of
width 790µm after a temperature quench, showing monopoles,
boojums and various integer and half-integer defects [Turok et al,
Science (’91)].
The schlieren textures with two and four
brushes exhibited by a uniaxial nematic
film at 114.8◦
centigrade.
[Chandrasekhar et al, Current
Science (’98)].
Nucleation of ellipsoidal nematic droplet with an aspect ratio of 1.7
and homogeneous director field in a MC simulation
(n = 20, L∗
= 15, ∆P∗
= 0.052). [Cuetos et al, PRL (’07)].
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 6 / 31
7. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
Mean field description
Landau (’62)
de Gennes (’91)
Theoretic treatment : broken symmetry variable,
conservation laws, order of transition.
Coarse graining of space : Symmetry based
ansatz of F (instead of explicit DOF coarse
graining).
Temporal coarse graining retaining thermal
fluctuation effects.
Numerical techniques in mesoscale
◮ Brownian dynamics, Dissipative particle
dynamics, Time-dependent Ginzburg-Landau.
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 7 / 31
8. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
Definition of Order
Quantified through a symmetric traceless tensor Qαβ having five degrees
of freedom.
Molecular frame :
Q(x, t) = du f(x, u, t) uu ≡ uu (quadrupolar symmetry).
Principal frame : Qαβ = 3
2S(nαnβ −1
3 δαβ)+T
2 (lαlβ −mαmβ)(α, β = x, y, z).
Principal values represent strength of uniaxial (S) and biaxial (T)
ordering.
Principal axes designate the director n and the codirector l and the joint
normal m.
◮ S = T = 0 correspond to isotropic phase.
◮ S = 2
3 , T = 0 correspond to uniaxial nematic phase.
◮ T = 0 correspond to biaxial phase.
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 8 / 31
9. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
Statics : “Minimal” model
FGLdG = d3
x[
1
2
ATrQ2
+
1
3
BTrQ3
+
1
4
C(TrQ2
)2
+ E′
(TrQ3
)2
+
1
2
L1(∂αQβγ)(∂αQβγ) +
1
2
L2(∂αQαβ)(∂γQβγ)].
Free energy diagram
−6 −4 −2 0 2 4 6
−6
−4
−2
0
2
4
6
A
B
superheating spinodal line
I−N transition line
supercooling spinodal line
UN−BN transition line
isotropic
phase
biaxial
nematic
phase
discotic
phase
uniaxial
nematic
phase
Phase diagram
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 9 / 31
10. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
Kinetics
Landau-Ginzburg (model-A) dynamics for non-conserved order
parameter2.
◮ ∂tQαβ = −Γ[δαµδβν + δανδβµ − 2
d δαβδµν] δF
δQµν
+ ξµν.
Equation of motion
∂tQαβ(x, t) = −Γ [(A + CTrQ2
)Qαβ(x, t) + (B + 6E′
TrQ3
) Q2
αβ(x, t) −
L1∇2
Qαβ(x, t) − L2 ∇α(∇γQβγ(x, t)) ] + ξµν(x, t)
Route to equilibrium ⇒
1 nucleation kinetics above T∗
.
2 spinodal kinetics beneath T∗
.
2
Stratonovich: Zh.Eksp.Teor.Fiz. (’76), Bhattacharjee: PRE (’08)
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 10 / 31
11. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
Numerical recipe
Projection in orthonormal basis
◮ Qαβ(x, t) =
5
i=1 ai(x, t)Ti
αβ,
◮ ξαβ(x, t) =
5
i=1 ai(x, t)ξi
αβ.
Integration of the equation of a’s.
Transformation back to the principle frame.
Extraction of the largest and second largest eigenvalue and the
eigen-vectors corresponding to them.
Developed method: (Stochastic) Method of lines, Spectral collocation
methods and HPC of them.
Sytematic benchmark with scalar problem (e.g. Allen-Cahn equation),
OU process, linear and non linear theory of nematics 3.
3
Bhattacharjee et al: PRE (’08), JCP (’10)
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 11 / 31
12. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
Application I Nucleation kinetics of
nematic droplet
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 12 / 31
13. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
Classical nucleation theory
F(R) = −VρN∆µ + Aσ
V = 4
3 πR3, A = 4πR2.
∆µ = L∆T/T∗.(L=latent heat, σ=surface tension)
Nucleated droplet grow (R > Rc) or shrink (R < Rc).
Rc = 2σ/ρN|∆µ|, Fc = 16πσ3/3ρ2
N(∆µ)2.
Shape of nucleated phase ⇒ dV = constant, minimum of dA ?
Liquid-gas problem: ρN(x), σ(x) uniform ⇒ spherical droplet.
Isotropic-nematic problem ? FV(R) = VρN∆µ; σ = σ[Q{S(x), n(x)}].
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 13 / 31
14. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
Nematic droplet in isotropic background
Athermal system with handcrafted nematic droplet.
No approximation of surface free energy (e.g. Rapini-Papoular
anchoring energy4) needed in our formulation.
Consequences : nucleation rate (∝ e−∆F/kBT) can be calculated exactly,
apart from the prefactors.
S(x, t); t = 0, θ = π/4
4
Fs ∼ σ [1 + ω(q⊥ · n)2
], σ =interfacial tension, ω = anchoring strength
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 14 / 31
15. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
Nematic droplet in isotropic background
Athermal system with handcrafted uniaxial nematic droplet.
No approximation of surface free energy needed in our formulation.
Consequences : nucleation rate (∝ e−∆F/kBT) can be calculated exactly,
apart from the prefactors.
Contribution from the anisotropic surface tension ⇒ shape change from
circular to ellipsoidal 5.
t = 0
L2 = 0, t = 3000τ L2 > 0, t = 900τ L2 < 0, t = 1500τ
5
Bhattacharjee: PRE (’08)
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 15 / 31
16. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
Nematic droplet in isotropic background
∂tQαβ(x, t) = −Γ [(A + CTrQ2
)Qαβ(x, t) + (B + 6E′
TrQ3
) Q2
αβ(x, t) −
L1∇2
Qαβ(x, t) − L2 ∇α(∇γQβγ(x, t)) ] + ξµν(x, t)
t = 0
L2 = 0, t = 3000τ L2 > 0, t = 900τ L2 < 0, t = 1500τ
Homogeneous director field throughout the nucleation process.
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 16 / 31
17. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
Fluctuation induced nucleation
Temperature fluctuation drives spontaneously the nucleation event.
L2 = 0; t = 1200τ
S(x,t), n(x,t)
L2 = 0; t = 3300τ
sin2
[2θ(x, t)]
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 17 / 31
18. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
3D Nematic : L2 = 0
t = 600τ
t = 900τ
t = 690τ
t = 3000τ
droplet conformation
S(x, t) along the droplet
intersection
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 18 / 31
19. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
2D Nematic : L2 > 0
t = 2040τ t = 2400τ
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 19 / 31
20. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
3D Nematic : L2 > 0
t = 2070τ
t = 6000τ
t = 2190τ
θ(x, t) at t = 2100τ
t = 2370τ
S(x, t) along droplet
intersection
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 20 / 31
21. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
2D Nematic : L2 < 0
t = 900τ t = 2250τ
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 21 / 31
22. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
3D Nematic : L2 < 0
t = 990τ
t = 3900τ
t = 1380τ
t = 990τ
t = 1860τ
S(x, t) along droplet
intersection
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 22 / 31
23. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
Application II Defect morphology in spinodal
kinetics
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 23 / 31
24. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
Topological characterization of point defects
Uniaxial nematic defects are characterized by the group Z2, having
unstable integer and stable half integer charged defects 6.
Biaxial nematic defects are characterized by the group Q8, having a
stable integer (¯C0 class, 2π rotation of director) and three half-integer
(Cx, Cy, Cz, π rotation of director) charged defects 7.
Defects are visualized and classified through scalar order.
The half-integer defect locations are identified in S(x, t), T(x, t) while the
textures show a subset.
6
Mermin ’79
7
Goldenfeld et al. ’95
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 24 / 31
25. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
Uniaxial defect
S(x,t), n(x,t)
sin2
[2θ(x, t)]
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 25 / 31
26. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
Biaxial defect
S(x,t)
T(x,t)
Texture
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 26 / 31
27. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
Defect core structure
0 5 10 15 20 25 30 35 40 45
0
0.02
0.04
0.06
0.08
0.1
0.12
0.14
0.16
0.18
0.2
Distance
OrderParameter
S
T
Uniaxial defect
110 120 130 140 150 160
0
0.1
0.2
0.3
0.4
0.5
0.6
0.7
0.8
Distance
Orderparameter
S
T
Defect class Cx
145 150 155 160 165 170 175 180
0.4
0.5
0.6
0.7
0.8
0.9
1
Distance
Orderparameter
S
T
Defect class Cy
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 27 / 31
28. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
Line defects
Points in two dimensions correspond to
lines in three dimensions.
Annihilation of point defect-antidefect
correspond to formation and
disappearance of loop.
Line defects pass through each other
through intercommutation i.e.
exchanging segmentsa.
Intercommutation of lines depend on the
underlying abelian nature of the group
elements of that particular homotopy
groupb.
a
Turok et al ’91
b
Poenaru et al ’77
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 28 / 31
29. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
Line defects
No topological rigidity found in biaxial nematics!
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 29 / 31
30. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
Summary
Methods
Formulation of a fluctuating equation for nematics within GLdG
framework; novel visualization technique of defects.
Nucleation kinetics
Anisotropy in the droplet shape found within GLdG theory.
Breakdown of the CNT due to nontrivial defect conformation within
droplet.
Coarsening kinetics
Classification and visualization of all defect classes in nematics.
No defect entanglement found in biaxial nematics within the “minimal”
GLdG framework.
Animations :
http://www.youtube.com/view_play_list?p=7F62606B554B63A6
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 30 / 31
31. Outline Introduction Numerics and Benchmarks Nucleation Coarsening Conclusion
Thanks for your attention
Amit Kumar Bhattacharjee (Institute of Materialphysics in Space Köln, Germany)KKK Seminar February 21, 2012 31 / 31