In this slide contains Principle, Methods, Interpretation and applications of XRD.
Presented by: Udit Narayan Singh (Department of pharmaceutics)
RIPER, anantpur.
In this slide contains Principle, Methods, Interpretation and applications of XRD.
Presented by: Udit Narayan Singh (Department of pharmaceutics)
RIPER, anantpur.
In this slide contains Interference In Atomic Absorption Spectroscopy and applications.
Presented by: Shaik Gouse ul azam. ( department of pharmaceutical analysis.)
RIPER, anantpur.
Nuclear magnetic resonance (NMR) spectroscopyVK VIKRAM VARMA
SPECTROSCOPY
NMR SPECTROSCOPY
HISTORY
THEORY
PRINCIPLE
INSTRUMENTATION
SOLVENTS USED IN NMR(PROTON NMR)
CHEMICAL SHIFT
FACTORS AFFECTING CHEMICAL SHIFT
RELAXATION PROCESS
SPIN-SPIN COUPLING
푛+1 RULE
NMR SIGNALS IN VARIOUS COMPOUNDS
COUPLING CONSTANT
NUCLEAR MAGNETIC DOUBLE RESONANCE/ SPIN DECOUPLING
FT-NMR
ADVANTAGES & DISADVANTAGES
APPLICATIONS
REFERENCE
MASS SPECTROSCOPY ( Molecular ion, Base peak, Isotopic abundance, Metastable ...Sachin Kale
CONTENT:
Molecular Ion Peak
Significance of Molecular ion & Graphically Method
Base Peak
Isotopic Abundance
Metastable Ion
Significance of Metastable ion
Nitrogen Rule & graphs
Formulation of Rule
In this slide contains instrumentation of Fourier-Transform Nuclear Magnetic Resonance (FT-NMR).
Presented by: P. Venkatesh. (Department of pharmaceutical analysis).
RIPER, anantpur.
This is regarding the Fourier Transform NMR helpful for the analysis in the Pharmaceutical field and this is helpful to the Masters students as this topic is in the syllabus and the presentation gives the complete and detail idea of various aspects of FT-NMR.
In this slide contains Interference In Atomic Absorption Spectroscopy and applications.
Presented by: Shaik Gouse ul azam. ( department of pharmaceutical analysis.)
RIPER, anantpur.
Nuclear magnetic resonance (NMR) spectroscopyVK VIKRAM VARMA
SPECTROSCOPY
NMR SPECTROSCOPY
HISTORY
THEORY
PRINCIPLE
INSTRUMENTATION
SOLVENTS USED IN NMR(PROTON NMR)
CHEMICAL SHIFT
FACTORS AFFECTING CHEMICAL SHIFT
RELAXATION PROCESS
SPIN-SPIN COUPLING
푛+1 RULE
NMR SIGNALS IN VARIOUS COMPOUNDS
COUPLING CONSTANT
NUCLEAR MAGNETIC DOUBLE RESONANCE/ SPIN DECOUPLING
FT-NMR
ADVANTAGES & DISADVANTAGES
APPLICATIONS
REFERENCE
MASS SPECTROSCOPY ( Molecular ion, Base peak, Isotopic abundance, Metastable ...Sachin Kale
CONTENT:
Molecular Ion Peak
Significance of Molecular ion & Graphically Method
Base Peak
Isotopic Abundance
Metastable Ion
Significance of Metastable ion
Nitrogen Rule & graphs
Formulation of Rule
In this slide contains instrumentation of Fourier-Transform Nuclear Magnetic Resonance (FT-NMR).
Presented by: P. Venkatesh. (Department of pharmaceutical analysis).
RIPER, anantpur.
This is regarding the Fourier Transform NMR helpful for the analysis in the Pharmaceutical field and this is helpful to the Masters students as this topic is in the syllabus and the presentation gives the complete and detail idea of various aspects of FT-NMR.
Sub topics of NMR spectroscopy.Volume and Concentration Consideration in NMR Spectroscopy,Spectrometer setup,Deuterium Lock,Probe Tunning for optimizing NMR signal,Sample Tune Placement,
A brief description of NMR sub topics regarding to Volume and Concentration, Consideration in NMR Spectroscopy, Biomolecule samples, Small molecule samples, Sample volume, Spectrometer setup, NMR instrumentation, Deuterium Lock, Probe Tunning for optimizing NMR signal, Sample Tube Placement
1. contents - NMR SPECTROMETER
INTRUMENTATION OF NMR
COMPONENTS OF NMR SPECTROMETER
REFERENCES
2. NMR Spectrometer is an instrument which is used to obtain NMR Spectra.
A high resolution spectrometer contains a complex collection of electronic equipments.
NMR spectrometers are referred to as 300 MHz instruments (or) 500 MHz instruments, depending upon the frequency of the RF radiation used for resonance.
These spectrometers use very powerful magnets to create a small but measurable energy difference between two possible spin states.
3. COMPONENTS OF NMR SPECTROMETER
Magnet
Field Lock
Shim Coils
Probe Unit
- Sample Holder
- RF Oscillator
- Sweep Generator
- RF Receiver
Detector
Read out Device
4. magnets ;-
The heart of both continuous-wave and Fourier form NMR instruments is the magnet.
Magnets produces the magnetic field, which determines the frequency of any nucleus.
Sensitivity and resolution are critically dependent on quality of magnet.
It should give homogenous magnetic field, i.e. the strength of the magnetic field should not change from point to point.
The magnet must be capable of producing a very strong magnetic field with strength at least 10,000 gauss
5. Types of Magnets
Permanent Magnet:
Permanent magnets with field strengths of 0.7, 1.4, and 2.1 T are mostly used.
Permanent magnets are highly temperature-sensitive and require extensive thermostating and shielding as a consequence.
It is inexpensive and simple to operate.
They are operated up to 30 – 60 MHz
They provide field of good homogeneity.
Disadvantage:- Field variation is not possible, as required, because different nuclei resonate at different magnetic field.
6. Electro Magnets:
They require power supply to produce magnetic field
Cooling system is required to counter the heat generated from the electric power.
They are more effective than the permanent magnet because of possibility of field variation
They are operated up to 60 - 90 MHz
7. 3. Super conducting magnet:
A super conducting magnet has an electromagnet made up of superconducting wire.
These magnets attain fields large as 21 T.
Superconducting wire has a resistance approximately equal to zero by immersing it in liquid helium (at 0° c).
Superconducting magnet systems be filled with liquid nitrogen every 10 days
The length of superconducting wire in the magnet is typically several miles.
They are operated up to 470 MHz
8. field lock
In order to produce a high resolution NMR spectrum of a sample there is need of homogeneous magnetic field.
The field strength might vary due to aging of the magnet, movement of metal object near the magnet, and temperature fluctuations.
9. shim coils
Shim coils are pairs of wire loops.
By using these coils Current is adjusted until the magnetic field has required homogeneity.
Magnetic field produced by the Shim coils cancels the small residual inhomogeneities in the magnetic field.
About NMR, Fundamental Principle and Theory, Instrumentation, Solvent, Chemical Shift, Factor Affecting Chemical Shift, Spin-spin Coupling, Application of NMR, Reference, Acknowledgment
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Sérgio Sacani
Since volcanic activity was first discovered on Io from Voyager images in 1979, changes
on Io’s surface have been monitored from both spacecraft and ground-based telescopes.
Here, we present the highest spatial resolution images of Io ever obtained from a groundbased telescope. These images, acquired by the SHARK-VIS instrument on the Large
Binocular Telescope, show evidence of a major resurfacing event on Io’s trailing hemisphere. When compared to the most recent spacecraft images, the SHARK-VIS images
show that a plume deposit from a powerful eruption at Pillan Patera has covered part
of the long-lived Pele plume deposit. Although this type of resurfacing event may be common on Io, few have been detected due to the rarity of spacecraft visits and the previously low spatial resolution available from Earth-based telescopes. The SHARK-VIS instrument ushers in a new era of high resolution imaging of Io’s surface using adaptive
optics at visible wavelengths.
Multi-source connectivity as the driver of solar wind variability in the heli...Sérgio Sacani
The ambient solar wind that flls the heliosphere originates from multiple
sources in the solar corona and is highly structured. It is often described
as high-speed, relatively homogeneous, plasma streams from coronal
holes and slow-speed, highly variable, streams whose source regions are
under debate. A key goal of ESA/NASA’s Solar Orbiter mission is to identify
solar wind sources and understand what drives the complexity seen in the
heliosphere. By combining magnetic feld modelling and spectroscopic
techniques with high-resolution observations and measurements, we show
that the solar wind variability detected in situ by Solar Orbiter in March
2022 is driven by spatio-temporal changes in the magnetic connectivity to
multiple sources in the solar atmosphere. The magnetic feld footpoints
connected to the spacecraft moved from the boundaries of a coronal hole
to one active region (12961) and then across to another region (12957). This
is refected in the in situ measurements, which show the transition from fast
to highly Alfvénic then to slow solar wind that is disrupted by the arrival of
a coronal mass ejection. Our results describe solar wind variability at 0.5 au
but are applicable to near-Earth observatories.
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
Professional air quality monitoring systems provide immediate, on-site data for analysis, compliance, and decision-making.
Monitor common gases, weather parameters, particulates.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
A brief information about the SCOP protein database used in bioinformatics.
The Structural Classification of Proteins (SCOP) database is a comprehensive and authoritative resource for the structural and evolutionary relationships of proteins. It provides a detailed and curated classification of protein structures, grouping them into families, superfamilies, and folds based on their structural and sequence similarities.
Cancer cell metabolism: special Reference to Lactate PathwayAADYARAJPANDEY1
Normal Cell Metabolism:
Cellular respiration describes the series of steps that cells use to break down sugar and other chemicals to get the energy we need to function.
Energy is stored in the bonds of glucose and when glucose is broken down, much of that energy is released.
Cell utilize energy in the form of ATP.
The first step of respiration is called glycolysis. In a series of steps, glycolysis breaks glucose into two smaller molecules - a chemical called pyruvate. A small amount of ATP is formed during this process.
Most healthy cells continue the breakdown in a second process, called the Kreb's cycle. The Kreb's cycle allows cells to “burn” the pyruvates made in glycolysis to get more ATP.
The last step in the breakdown of glucose is called oxidative phosphorylation (Ox-Phos).
It takes place in specialized cell structures called mitochondria. This process produces a large amount of ATP. Importantly, cells need oxygen to complete oxidative phosphorylation.
If a cell completes only glycolysis, only 2 molecules of ATP are made per glucose. However, if the cell completes the entire respiration process (glycolysis - Kreb's - oxidative phosphorylation), about 36 molecules of ATP are created, giving it much more energy to use.
IN CANCER CELL:
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
introduction to WARBERG PHENOMENA:
WARBURG EFFECT Usually, cancer cells are highly glycolytic (glucose addiction) and take up more glucose than do normal cells from outside.
Otto Heinrich Warburg (; 8 October 1883 – 1 August 1970) In 1931 was awarded the Nobel Prize in Physiology for his "discovery of the nature and mode of action of the respiratory enzyme.
WARNBURG EFFECT : cancer cells under aerobic (well-oxygenated) conditions to metabolize glucose to lactate (aerobic glycolysis) is known as the Warburg effect. Warburg made the observation that tumor slices consume glucose and secrete lactate at a higher rate than normal tissues.
What is greenhouse gasses and how many gasses are there to affect the Earth.moosaasad1975
What are greenhouse gasses how they affect the earth and its environment what is the future of the environment and earth how the weather and the climate effects.
Nutraceutical market, scope and growth: Herbal drug technologyLokesh Patil
As consumer awareness of health and wellness rises, the nutraceutical market—which includes goods like functional meals, drinks, and dietary supplements that provide health advantages beyond basic nutrition—is growing significantly. As healthcare expenses rise, the population ages, and people want natural and preventative health solutions more and more, this industry is increasing quickly. Further driving market expansion are product formulation innovations and the use of cutting-edge technology for customized nutrition. With its worldwide reach, the nutraceutical industry is expected to keep growing and provide significant chances for research and investment in a number of categories, including vitamins, minerals, probiotics, and herbal supplements.
2. INTRODUCTION
• NMR spectroscopy, different from the
interaction of E.M.R. with matter.
• Sample is subjected with two magnetic
field, one is stationary and another is
varying at same radio frequency.
• Combination of these two field energy is
absorbed by sample and signal is obtained
when electromagnetic field provided to
the nucleus of the sample.
• Nucleus start spin around the nuclear axis
and generate another magnetic field.
• Combination of these two field, the energy
is absorbed by nucleus, this technique is
called as NMR spectroscopy.
3. COMPONENTS IN NMR
SPECTROMETER
• An intense , homogeneous and stable magnetic field .
• A probe which enables the coils used to excite and detect the signal, to
be placed close to the sample.
• A high power RF transmitter probable of delivering sharp pulses.
• A sensitive receiver to amplify the NMR signal.
• A detector to convert the NMR signals in to a form which can be stored
in computer memory.
• A pulse programmer to produce precisely time pulses and delays.
• A computer to control everything and to process the data.
5. MAGNET
• Must be strong, stable, and produce a homogeneous field.
(Homogeneous, the field does not vary in strength or
direction from point to point over the space occupied by the
sample)
• Range from 60 MHz (1.4 T) to 700 MHz (16.4 T) and
higher.
• There are two parts of magnet-
a) Superconducting magnet
b) Shim Coils
6. a) Superconducting magnet-
• It is made up of superconducting
Nb/Sn or Sb/Ti wire.
• The magnet is submerged liquid
helium, for providing the sufficient
cooling.
• The magnet and the liquid helium
reservoir are encased in a liquid
nitrogen reservoir to decrease the
evaporative loss of more expensive
liquid helium.
• The sample probe is put in the bore
along with a set of room
temperature shim coils.
7. b) Shim Coils-
• Shim coils are used for making
magnetic field homogeneous,
provided by the magnets.
• Through these coils current is
adjusted until the magnetic field has
the required homogeneity.
• Magnetic field produced by the shim
coils cancel the small residual
inhomogeneities in the main
magnetic field.
• Naming of shim coils is done on the
basis, that on which direction they
generate the corresponding magnetic
field.
8. SAMPLE HOLDER
• The sample holder in NMR is normally
tube-shaped and is therefore called the
sample tube.
• The tube must be transparent to RF
radiation, durable, and chemically inert.
• Glass or Pyrex tubes are commonly
used.
• These are sturdy, practical, and cheap.
• They are usually about 6–7 in. long and
~1/8 in. in diameter, with a plastic cap.
• This type of tube is used for obtaining
spectra of bulk samples and solutions.
9.
10. • In which the sample holder is placed.
• Contains an air turbine to spin the
sample holder, while the spectrum is
collect.
• used to excite and detect the
magnetization in radio-frequency of
sample.
• The most essential component is the
RF transmitting and receiving coil.
• For maximum sensitivity, a fixed
frequency probe is needed (mean: a
separate probe is required for each
nucleus like1H, 13C, 19F).
PROBE
11.
12. RF GENERATOR AND DETECTOR
RF detector-
• The NMR signal emanating from
the probe is detected by a digitizer
receiver at regular time intervals.
• These signals in the time domain
must be converted to a frequency
domain spectrum by application of
a “Fourier transformation” or
other mathematical transformation
13. SAMPLE PREPARATION
Samples are degassed to remove oxygen and filtered to remove iron
particles; both O2 and iron are paramagnetic and cause undesired line
broadening.
Liquid Samples:
• Neat non-viscous liquids are run “as is” by placing about 0.5 mL of the
liquid in a glass NMR tube.
• Liquids can be mixed in a suitable solvent, concentration is generally
about 2–10%.
Solid Samples:
• Solid samples are dissolved in a suitable solvent for analyses.
• A typical sample size is 2–3 mg dissolved in 0.5 mL of solvent.
Gas Samples:
• Have no sufficient sensitivity to analyse gas phase samples.
• Gases must be concentrated by being absorbed in a suitable solvent.
14. SOLVENT
A suitable solvent for NMR should meet the following requirements:
1) Chemically inert toward the sample and the sample holder,
2) Have no NMR absorption spectrum itself or a very simple spectrum,
and
3) Easily recovered, by distillation, for example, if the original sample is
required for other testing.
• The best solvents for proton NMR contain no protons.
• Deuterated chloroform (CDCl3), deuterated water (D2O) and many
other deuterated solvents
15. ADVANTAGE OF NMR
• One type of organic compound can be determined
quantitatively in the presence of a different type, such as
the percentage of alcohols in alkanes, amines in alcohols,
aromatics and aliphatic in petroleum.
• NMR can be used to provide determination of chemical
purity and quantitative measurements of impurities in
materials.
16. ACKNOWLEDGEMENT
I wish to express my sincere gratitude to Mrs. Preeti Gupta
for providing me an opportunity to do my presentation work on
“NMR Spectrophotometer”
I sincerely thank Mrs. Preeti Gupta for their guidance and
encouragement in carrying out this presentation work. I also
wish to express my gratitude to my class friends of BBAU,
who rendered their help during the period of my presentation
work.