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Implementation of a PGR Global
Documentation system in Portugal
Ana Maria Barata, Filomena Rocha, João Oliveira, José Maria Lima
Banco Português de Germoplasma Vegetal
Collections network
Allium sativum L. Humulus lupulus L.
Viability Tests Brassica oleracea L.
Phenotypic Evaluation
Phaseolus vulgaris L.
Collections Total
Cereals 719
Forrages 121
Fruits 37
Grain Legumes 734
Medicinal and Aromatic Plants 47
Oil crops 41
Ornamentals 63
Vegetables 653
Other species 57
Total 2 472
 Identification of functionalities needs
Indexing of data
to relate the information from your genebank into the system
Load the data inventory
first start with the accession-level passport data for all collections
maintained in the genebank, inventory data and secondly plan f
or the remaining related datasets - such as characterization,
evaluation, molecular data.
 Public web site launching
Analysis of the procedures in the genebank
Business Concepts (Taxonomy, Accession, Collection, Curator,
Passport, …
Actual Data Base (Organized by species, File Maker and Excel)
Business Process
Reasoning for the implementation
Created by USDA/ARS, with Bioversity International that
coordinated testing and feedback from the international
genebank community, with the Crop Trust.
Royalty free, it can be world-wide, permission to use, to copy
and/or modify.
Result analysis and decision
Main of he functionalities support BPGV and
ISOplexis needs
Indexing of data
• Design base files, in excel, for gathering the existing passport and
inventory data
• Creation of script files, in “excel” and “txt”, to transform the data,
from the base files to the import wizards tools format
• Developing views, in Admin Tool, to use in Curator Tool
Base File
Import File 00512-BPGV
BPGV00512
• Building preliminary data: code groups (codes for active and base
collection), cooperators and taxonomy
• Initial tests performed with a sample of 40 Accessions
• Validation of the imported information
• Corrections in de script files
• Load all the accession’s passport and inventory data
Inventory
2011 Training in June 2011 in BPGV and in ISOplexis
October/2015 Accessions e Inventory data upload
Dez/2015 Public web site on-line
2013 Evaluation of system capacity to genebanks needs:
functionality analysis and platform functionalities
Change version from 1.7.2 to 1.9.4
without loosing the data
This process has taken sometime and encountered some
difficulties,
but with the support of Juan Carlos and the João Oliveira and
José Lima it was possible to test and change.
Proposal and Suggestions for new functionalities
• Include decimal values in sample quantity
(already implemented by our suggestion)
• To build a migration tool for version upgrade
• Develop “specific forms”, supported in the GG
tables, to manage accessions stocks ( inputs and
outputs) in the different conservation conditions
and collections.
Recomendations
• Follow the implementation process in its four steps:
1) System Evaluation Training;
2) Functionality Analysis;
3) Implementation Decision;
4) Planning Next Steps;
• Ensure national and institutional recognition and long
term support;
• Genebank operations budget to include budget line for
documentation and information management activities;
• Proper training of genebank staff on the GG tools;
Recomendations
• Document your change processes and data index -
make your own ‘GRIN-Global [Name] Data Dictionary’;
• Establishment of a community of practices for GRIN-
Global development and users;
• To facilitate upgrading the priority must be to build a
migration tool for version upgrade;
• Long term support from USDA, TRUST and Bioversity
International, for adoption and implementation.
Thank you very much

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GRIN-Global Status I, INIAV 2016 February

  • 1. Implementation of a PGR Global Documentation system in Portugal Ana Maria Barata, Filomena Rocha, João Oliveira, José Maria Lima
  • 2.
  • 3. Banco Português de Germoplasma Vegetal
  • 5.
  • 6. Allium sativum L. Humulus lupulus L.
  • 7.
  • 8.
  • 11.
  • 12. Collections Total Cereals 719 Forrages 121 Fruits 37 Grain Legumes 734 Medicinal and Aromatic Plants 47 Oil crops 41 Ornamentals 63 Vegetables 653 Other species 57 Total 2 472
  • 13.
  • 14.
  • 15.  Identification of functionalities needs Indexing of data to relate the information from your genebank into the system Load the data inventory first start with the accession-level passport data for all collections maintained in the genebank, inventory data and secondly plan f or the remaining related datasets - such as characterization, evaluation, molecular data.  Public web site launching
  • 16. Analysis of the procedures in the genebank Business Concepts (Taxonomy, Accession, Collection, Curator, Passport, … Actual Data Base (Organized by species, File Maker and Excel) Business Process
  • 17. Reasoning for the implementation Created by USDA/ARS, with Bioversity International that coordinated testing and feedback from the international genebank community, with the Crop Trust. Royalty free, it can be world-wide, permission to use, to copy and/or modify. Result analysis and decision Main of he functionalities support BPGV and ISOplexis needs
  • 18. Indexing of data • Design base files, in excel, for gathering the existing passport and inventory data • Creation of script files, in “excel” and “txt”, to transform the data, from the base files to the import wizards tools format • Developing views, in Admin Tool, to use in Curator Tool Base File Import File 00512-BPGV BPGV00512
  • 19. • Building preliminary data: code groups (codes for active and base collection), cooperators and taxonomy • Initial tests performed with a sample of 40 Accessions • Validation of the imported information • Corrections in de script files • Load all the accession’s passport and inventory data Inventory
  • 20. 2011 Training in June 2011 in BPGV and in ISOplexis October/2015 Accessions e Inventory data upload Dez/2015 Public web site on-line 2013 Evaluation of system capacity to genebanks needs: functionality analysis and platform functionalities
  • 21. Change version from 1.7.2 to 1.9.4 without loosing the data This process has taken sometime and encountered some difficulties, but with the support of Juan Carlos and the João Oliveira and José Lima it was possible to test and change.
  • 22. Proposal and Suggestions for new functionalities • Include decimal values in sample quantity (already implemented by our suggestion) • To build a migration tool for version upgrade • Develop “specific forms”, supported in the GG tables, to manage accessions stocks ( inputs and outputs) in the different conservation conditions and collections.
  • 23. Recomendations • Follow the implementation process in its four steps: 1) System Evaluation Training; 2) Functionality Analysis; 3) Implementation Decision; 4) Planning Next Steps; • Ensure national and institutional recognition and long term support; • Genebank operations budget to include budget line for documentation and information management activities; • Proper training of genebank staff on the GG tools;
  • 24. Recomendations • Document your change processes and data index - make your own ‘GRIN-Global [Name] Data Dictionary’; • Establishment of a community of practices for GRIN- Global development and users; • To facilitate upgrading the priority must be to build a migration tool for version upgrade; • Long term support from USDA, TRUST and Bioversity International, for adoption and implementation.