CIP Genebank Data Systems:
1.Genebank Overview
2.Genebak IT Platform
3.Identification Systems by Collection
4.Genebank and International/National databases
CIP Genebank Data Systems:
1.Genebank Overview
2.Genebak IT Platform
3.Identification Systems by Collection
4.Genebank and International/National databases
Standards in bioresource centers: practice in Japantbrc
30th January 2019The Sukosol hotel, Bangkok, Thailand
Hiroko Kawasaki
Industrial Innovation Division,
Biological Resources Center (NBRC),
National Institute of Technology and Evaluation (NITE), Japan
IDnova - RFID Vs. MRO. SNAM RETE GAS case studyMario Beltrami
Radio Frequency Identification enabling Safety & Security of the industrial hazardous infrastructures.
mcT Safety & Security
November 28, 2013 - Milan, Italy
"The Barcode" Presentation
By: Group Four (Aslam, Ceren, Fohn, Sara and Youssef)
for the group assignment of the "Research Methodology" course at the University of Greenwich
Standards in bioresource centers: practice in Japantbrc
30th January 2019The Sukosol hotel, Bangkok, Thailand
Hiroko Kawasaki
Industrial Innovation Division,
Biological Resources Center (NBRC),
National Institute of Technology and Evaluation (NITE), Japan
IDnova - RFID Vs. MRO. SNAM RETE GAS case studyMario Beltrami
Radio Frequency Identification enabling Safety & Security of the industrial hazardous infrastructures.
mcT Safety & Security
November 28, 2013 - Milan, Italy
"The Barcode" Presentation
By: Group Four (Aslam, Ceren, Fohn, Sara and Youssef)
for the group assignment of the "Research Methodology" course at the University of Greenwich
CIP Poster Genebank Data Management. A Digital Genebank: Information Management & Hardware Technology.
- What data is stored?
- What data is published?
- How is data colected?
AGENDA
Curator considerations for germplasm images
--Include a color calibration chart
--Include a measure tape
--Include a barcode label
--Include a watermark and a standard background color
--Draft guidelines for germplasm images
Data manager considerations for germplasm images
--CIP policy for images
--Update file image properties (metadata) with ExifTool: Authors and Copyright
--Upload image metadata on Genesys: Using a quick guide
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Field Employee Tracking System| MiTrack App| Best Employee Tracking Solution|...informapgpstrackings
Keep tabs on your field staff effortlessly with Informap Technology Centre LLC. Real-time tracking, task assignment, and smart features for efficient management. Request a live demo today!
For more details, visit us : https://informapuae.com/field-staff-tracking/
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Worried about document security while sharing them in Salesforce? Fret no more! Here are the top-notch security standards XfilesPro upholds to ensure strong security for your Salesforce documents while sharing with internal or external people.
To learn more, read the blog: https://www.xfilespro.com/how-does-xfilespro-make-document-sharing-secure-and-seamless-in-salesforce/
Your Digital Assistant.
Making complex approach simple. Straightforward process saves time. No more waiting to connect with people that matter to you. Safety first is not a cliché - Securely protect information in cloud storage to prevent any third party from accessing data.
Would you rather make your visitors feel burdened by making them wait? Or choose VizMan for a stress-free experience? VizMan is an automated visitor management system that works for any industries not limited to factories, societies, government institutes, and warehouses. A new age contactless way of logging information of visitors, employees, packages, and vehicles. VizMan is a digital logbook so it deters unnecessary use of paper or space since there is no requirement of bundles of registers that is left to collect dust in a corner of a room. Visitor’s essential details, helps in scheduling meetings for visitors and employees, and assists in supervising the attendance of the employees. With VizMan, visitors don’t need to wait for hours in long queues. VizMan handles visitors with the value they deserve because we know time is important to you.
Feasible Features
One Subscription, Four Modules – Admin, Employee, Receptionist, and Gatekeeper ensures confidentiality and prevents data from being manipulated
User Friendly – can be easily used on Android, iOS, and Web Interface
Multiple Accessibility – Log in through any device from any place at any time
One app for all industries – a Visitor Management System that works for any organisation.
Stress-free Sign-up
Visitor is registered and checked-in by the Receptionist
Host gets a notification, where they opt to Approve the meeting
Host notifies the Receptionist of the end of the meeting
Visitor is checked-out by the Receptionist
Host enters notes and remarks of the meeting
Customizable Components
Scheduling Meetings – Host can invite visitors for meetings and also approve, reject and reschedule meetings
Single/Bulk invites – Invitations can be sent individually to a visitor or collectively to many visitors
VIP Visitors – Additional security of data for VIP visitors to avoid misuse of information
Courier Management – Keeps a check on deliveries like commodities being delivered in and out of establishments
Alerts & Notifications – Get notified on SMS, email, and application
Parking Management – Manage availability of parking space
Individual log-in – Every user has their own log-in id
Visitor/Meeting Analytics – Evaluate notes and remarks of the meeting stored in the system
Visitor Management System is a secure and user friendly database manager that records, filters, tracks the visitors to your organization.
"Secure Your Premises with VizMan (VMS) – Get It Now"
OpenFOAM solver for Helmholtz equation, helmholtzFoam / helmholtzBubbleFoamtakuyayamamoto1800
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Check out the webinar slides to learn more about how XfilesPro transforms Salesforce document management by leveraging its world-class applications. For more details, please connect with sales@xfilespro.com
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top nidhi software solution freedownloadvrstrong314
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Dominate Social Media with TubeTrivia AI’s Addictive Quiz Videos.pdf
Barcoding at CIP Genebank 2020
1. S e e d s f o r R e s i l i e n c e P r o j e c t f o r N a t i o n a l G e n e b a n k s i n
N i g e r i a , Z a m b i a , E t h i o p i a , K e n y a a n d G h a n a
18 November, 2020
Barcoding at CIP Genebank & New GRIN-Global
Tools
Edwin Rojas (CIP)
IT Specialist &
GRIN-Global Administrator
Lima - Peru
2. Agenda
• CIP Genebank Overview
• General Specifications for Barcode and Media
• General Specifications for Hardware
• Barcode Use Case 1: Field Collection
• Barcode Use Case 2: Seed Collection
• Barcode Use Case 3: In Vitro Collection
• Barcode Use Case 4: Greenhouse
• Evaluate phytosanitary symptoms
• Sweetpotato clonal conservation in pots
• Cross flower of wild crops to regenerate seeds
• Seed growth in jiffy pots
• Manufacture and Label Providers
• New GRIN-Global Tools
• Questions and Answers
4. About CIP Genebank
CIP Genebank use a QMS (quality management system) to give the users of
the Genebank a visible assurance of the quality of the germplasm being
distributed, they are cleaned and viruses free.
CIP is the custodian of one
the world’s largest in vitro
collection for Potato,
Sweetpotato and Andean
roots and tubers crops
(ARTC).
CIP is the custodian of
one of the largest clonal
plant cryobanks.
6. About CIP Genebank: Environments
Cold chambers/
Laboratories
Greenhouses Field
7. About CIP Genebank
Term conservations
Term Conservation Format Collection Time
Long-term conservation Seed and cryo > 5 years
Medium-term conservation In vitro >1 year and < 5 years
Short-term conservation Field and
greenhouses
< 1 year
8. General Specifications for Barcodes and Media
Definition and benefits
A barcode is a machine-readable representation of information interpreted by the scanner.
A barcode help in:
1. A simple way and fast to acquire item information to identify it for example in conservation
the accession number
2. A simple way and fast to collect general information of the item for example in germplasm
distribution the order number, doi and accession number
3. Track the item for example with the inventory number
Therefore use barcodes in Genebanks is a good data management practice to gain efficiencies
1. CIP 700129 2. 2020-085;CIP 700129;10.18730/8V5~ 3. INV44026
9. Barcode
Types
Symbologies Description
1D (linear) Code 39 Can encode both numeric and alpha data
Code 128 For a wider selection of characters arose
than Code 39
2D Data Matrix
A Data Matrix Code is a two-dimensional
(2D) code that consists of black and white
modules. Capacity to recover 20-30% of
data
Though usually for small size items.
Data Matrix Code can store large amounts
of data for encoding, making them
appropriate for a wide variety of
applications.
QR
A QR Code is another type of 2D code
that consists of black modules arranged in
a square pattern on a white background.
Capacity to recover 20-30% of data
Though usually for websites and not for
small size items. QR is pretty looks.
QR Code can store large amounts of data
for encoding, making them appropriate for
a wide variety of applications.
General Specifications for Barcodes and Media
Barcode Types and Symbologies
10. Pointed end labels
(stick-ins)
1 roll of 1000 labels to 30 USD
Self-tie labels
(loop locks)
1 roll of 1000 labels to 25 USD
Self-adhesive labels
(square)
1 roll of 4000 labels to 32 USD
General Specifications for Barcodes and Media
Media types (labels)
12. Label
Type
Glue Type Purpose
Removable glue For medium-term conservation like In
vitro conservation and clonal
conservation in greenhouses. When
is needed to reuse the vessels to
facilitate wash them.
Permanent glue For long-term conservation like seed
conservation and cryo conservation
Self-adhesive labels
(square)
General Specifications for Barcodes and Media
Glue types (adhesives)
13. Label
Type
Media Type Purpose
Synthetic of
Polypropylene
For short-term or medium-term
conservation
Synthetic of
Polyester
For long-term conservation
(seeds or cryo)
Self-adhesive labels
(square)
General Specifications for Barcodes and Media
Media types
15. General Specifications for Hardware
Print technologies: Thermal transfer
Printing
Technology
Printer Type Purpose
Thermal Transfer Desktop Printer Recommended for genebank
activities in special for long-term
conservation.
Thermal transfer delivers high-
definition text, graphic, and bar code
print quality for maximum readability
and scannability.
Thermal transfer printing produces
long-life image stability
Use ribbon.
Ribbon
Label
16. General Specifications for Hardware
Print technologies: Direct thermal
Printing
Technology
Printer Type Purpose
Direct Thermal Desktop Printer Direct thermal printing is an old
technology, originally designed for
copiers and fax machines, that utilizes
chemically coated paper.
Not frequently used in desktop
printers.
Not use ribbon.
Mobile Printer Frequently used in mobile printers.
Label durability for a maximum of 3
months and used in greenhouses
when cross flower plants or in
laboratories for petri dishes for seed
viability o cryo activities.
Not use ribbon.
Laser or dot matrix Desktop Printer Not recommended for genebank
activities
Label
18. General Specifications for Hardware
Mobile computer specifications
IPXX = IP+ Code 1 + Code 2 = solid particle protection + liquid ingress protection
Product: PocketPC for Field
Manufacture/Model: Zebra, MC9300 series
Level of Protection: IP67
Cost: 2500 USD
scanner
19. General Specifications for Hardware
Resistance norm to define the level of protection of hardware: IP Norm
IPXX = IP+ Code 1+ Code 2
Code 1 Solid particle protection Code 2 Liquid ingress protection
0 No special protection 0 No waterproofing
1 Protection from solid objects greater
than 50 mm in diameter
1 Dripping water
2 Protection from solid objects greater
than 12 mm in diameter
2 Dripping water when tilted at 15°
3 Protection from solid objects greater
than 2.5 mm in diameter
3 Spraying water
4 Protection from solid objects greater
than 1 mm in diameter
4 Splashing of water
5 Complete protection against contact,
protection against dust deposit
5 Water jets
6 Complete protection against contact,
protection from infiltration of dust
6 Powerful water jets
7 Immersion, up to 1 meter (3 ft 3 in) depth
8 Immersion, 1 meter (3 ft 3 in) or more depth
https://en.wikipedia.org/wiki/IP_Code
20. General Specifications for Hardware
Mobile printer and mobile computer specifications
IPXX = IP+ Code 1+ Code 2
Product: Mobile Barcode Printer
Manufacture/Model: Zebra, ZQ600 Series
Level of Protection: IP54
Cost: 800 USD
Product: PocketPC for Laboratory and Greenhouse
Manufacture/Model : Zebra, TC72 series
Level of Protection: IP65
Cost: 2200 USD
scanner
21. General Specifications for Hardware
TabletPC specifications
IPXX = IP+ Code 1+ Code 2
Product: TabletPC for laboratory
Manufacture/Model : Zebra, ET51 series
Level of Protection: IP65
Cost: 1400 USD
22. General Specifications for Hardware
Barcode scanner and desktop printer specifications
IPXX = IP+ Code 1+ Code 2
Product: Handheld Scanner
Manufacture/Model: Zebra, DS8100 series
Level of Protection: IP52
Cost: 400 USD
Product: Desktop Barcode and RFID Printer
Manufacture/Model: Zebra, Series ZT411 series
Classification: Rugged metal frame and case for
demanding activities
Cost: 1500 USD
25. In Office Sowing Evaluation Harvest In Office
Write/Cut
Labels
Print
Field Book
Read & Write
on Paper
Read & Write
on Paper
Read & Write
on Paper
Read Paper &
Re-Write on PC
Print Labels
Upload
Field Book
Scan & Update
Field Book
Scan & Update
Field Book
Scan & Update
Field Book
Download
Field Book
Eliminate manual paper operations to reduce human error and labor cost
Barcode data collection is faster than manual collection
Adoption of superior method for data entry is needed: Barcode produces greater than 99.9% data accuracy
Skilled typists make one error approximately every 300 keystrokes
Barcode Use Case 1: Field collection
Steps of labeling
Field Book App: http://phenoapps.org/apps/
Next year 2021 will connect directly to GRIN-Global
Storage
Assign
location
Assign
location
27. Software: Zebra Designer Pro
Cost: $300 aprox.
https://www.zebra.com/us/en/products/software/barcode-printers/link-os/zebradesigner-pro.html
Barcode Use Case 1: Field collection
Components and their specifications
Barcode: accession number + ’-’ + plot number
Example: CIP 702333-3
Printing type: Thermal transfer
28. Barcode Use Case 1: Field collection
Components and their specifications
Product: Desktop Barcode and RFID Printer
Manufacture/Model: Zebra, Series ZT411 series
Classification: Rugged metal frame and case for
demanding activities
Cost: 1500 USD
Printing type: Thermal transfer
Self-tie labels (loop locks)
Synthetyc of polyplas
1 roll of 1000 labels to 30 USD
Sizes: 191 x 255 mm, 4 columns
Thickness: 200 microns
Product: Ribbon Wax
Model: 5319 PERFORMANCE
Manufacture: Zebra
Cost: 20 USD
Purpose: short-term conservation
29. Barcode Use Case 1: Field collection
Data collection
Field Book App: http://phenoapps.org/apps/
A free tool for Android
Next year 2021 will connect directly to GRIN-Global
meanwhile import/export from Excel
User Manual:
https://excellenceinbreeding.org/sites/default/files/manual/field_book_manual_v3.pdf
30. Barcode Use Case 1: Field collection
Print barcode labels with Zebra Designer
Demo (5 mins)
31. Barcode Use Case 2: Seed collection
Video (48 segs)
https://www.youtube.com/watch?v=q7ep_tQQs5Q
34. Software to print: GRIN-Global Mobile App
A free tool
https://gitlab.com/GRIN-Global/grin-global-apps/mobileapp
Barcode Use Case 2: Seed collection
Components and their specifications
Barcode: ’INV’ + inventory id
Example: INV 299661
Printing type: Thermal transfer
35. Barcode Use Case 2: Seed collection
Components and their specifications
Product: Desktop Barcode and RFID Printer
Manufacture/Model: Zebra, Series ZT411 series
Classification: Rugged metal frame and case for
demanding activities
Cost: 1500 USD
Printing type: Thermal transfer
Self-adhesive labels (square)
Synthetic of polyester
1 roll of 4000 labels to 32 USD
Sizes: 3.3 x 3.5 mm, radius corner of 2.0 mm,3 columns
Glue: Permanent glue
Product: Ribbon Resin
Model: 5095 PERFORMANCE
Manufacture: Zebra
Cost: 65 USD
Purpose: long-term conservation
36. Barcode Use Case 2: Seed collection
Data collection
Inventory Mobile App: https://gitlab.com/GRIN-Global/grin-global-apps/mobileapp
A Free tool for Android and Windows
YouTube training:
https://www.youtube.com/watch?v=kMaMgfNpRCk&list=PLrY0roojbpPV0GWtFx6J5kihJMHvue2k7
45. Barcode Use Case 3: In vitro collection
Verify labels after subculture
46. Barcode Use Case 3: In vitro collection
Components and their specifications
Product: Desktop Barcode and RFID Printer
Manufacture/Model: Zebra, Series ZT411 series
Classification: Rugged metal frame and case for
demanding activities
Cost: 1500 USD
Printing type: Thermal transfer
Self-adhesive labels (square)
Synthetic of polypropylene
1 roll of 4000 labels to 32 USD
Sizes: 3.3 x 3.5 mm, radius corner of 2.0 mm,3 columns
Glue: REMOVABLE glue
Product: Ribbon Wax/Resin
Model: 3200 PERFORMANCE (35USD)
Manufacture: Zebra
Cost: 35 USD
Purpose: medium-term conservation
47. Barcode Use Case 3: In vitro collection
Barcode encoded
Barcode: ’INV’ + inventory id
Example: INV 299661
Printing type: Thermal transfer
Separation between
inventories to avoid
labeling errors
Green color for
materials free of
pathogens.
48. Barcode Use Case 4: Greenhouse
Evaluate phytosanitary symptoms
Sweetpotato clonal conservation in pots
Cross flower of wild crops to regenerate seeds
Seed growth in jiffy pots
Video (1.11 min) to evaluate phytosanitary symptoms
https://www.youtube.com/watch?v=4fL9kjJ6hxo
50. Barcode Use Case 4: Greenhouse
Specifications: Evaluate phytosanitary symptoms
Product: Desktop Barcode and RFID Printer
Manufacture/Model: Zebra, Series ZT411 series
Classification: Rugged metal frame and case for
demanding activities
Cost: 1500 USD
Printing type: Thermal transfer
Self-adhesive labels (square)
Synthetic of polypropylene
1 roll of 4000 labels to 32 USD
Sizes: 3.3 x 3.5 mm, radius corner of 2.0 mm,3 columns
Glue: REMOVABLE glue
Product: Ribbon Wax/Resin
Model: 3200 PERFORMANCE (35USD)
Manufacture: Zebra
Cost: 35 USD
Purpose: medium-term conservation
51. Barcode Use Case 4: Greenhouse
Cross flower of wild crops to regenerate seeds
52. Barcode Use Case 4: Greenhouse
Specifications: Cross flower of wild crops to regenerate seeds
Manufacture/model: Zebra PolyPro 4000D
Synthetic of polypropylene
1 roll of 250 labels
36 rolls to 250 USD
Sizes: 2.0 x 1.0 inches,1 column
Permanent glue
Product: Mobile Barcode Printer
Manufacture/Model: Zebra, ZQ600 Series
Level of Protection: IP54
Cost: 800 USD
Printing type: Direct thermal
Not use ribbon
53. Barcode Use Case 4: Greenhouse
Sweetpotato clonal conservation in pots
55. Barcode Use Case 4: Greenhouse
Specifications: Seed growth in jiffy pots
Product: Desktop Barcode and RFID Printer
Manufacture/Model: Zebra, Series ZT411 series
Classification: Rugged metal frame and case for
demanding activities
Cost: 1500 USD
Printing type: Thermal transfer
Product: Ribbon Wax/Resin
Model: 3200 PERFORMANCE (35USD)
Manufacture: Zebra
Cost: 35 USD
Purpose: medium-term conservation
Pointed end labels (stick-ins)
100 mm x 19 mm, 200 microns
1 roll of 1000 labels to 30 USD
Description: Waterproof lightweight non-adhesive
stick in (push in) plant tags. Pointed at one end so
they can be stuck into plant pots and trays.
56. Manufacture and Label Providers
Links by product
Manufacture for desktop printer: Zebra
https://www.zebra.com/us/en/products/printers/industrial/zt400-series.html
Manufacture for mobile printer: Zebra
https://www.zebra.com/us/en/products/printers/mobile/zq600-series.html
Manufacture for handheld computer: Zebra
https://www.zebra.com/us/en/products/mobile-computers/handheld/tc72-tc77-series-touch-computer.html
Manufacture for TabletPC: Zebra
https://www.zebra.com/us/en/products/spec-sheets/tablets/et51-android-scanner.html
Manufacture for scanner: Zebra
https://www.zebra.com/us/en/products/scanners/general-purpose-scanners/handheld.html
Provider of labels and ribbons:
https://www.labelzone.co.uk/labelstation/horticultural-labels/ (Label for field)
https://dura-id.com/industries-applications/horticulture/ (Label for field)
https://www.zebra.com/us/en/products/supplies/ribbons.html (Ribbons type)
https://www.zebra.com/us/en/products/supplies/labels-tags.html (Label for direct thermal)
57. Manufacture and Label Providers
Zebra Labels and Ribbons Catalog
https://www.zebra.com/content/dam/zebra_new_ia/en-us/solutions-verticals/product/Supplies/guide/zebra-certified-supplies-guide-selector-en-us.pdf
62. New GRIN-Global Tools
GRIN-Global Wizards and Mobile App
To facilitate daily work of genebank staff like technicians, supervisors, curators and
administrators was developed new software tools for the GRIN-Global platform.
Two types of GRIN-Global tools were developed:
1. Five Wizards for Curator Tool to handle data more smoothly
- Search Wizard
- Update Wizard
- Trait Wizard
- Print Wizard
- List Comparison Wizard
2. One mobile app for Android and Windows for data collection about inventories
The tools are Open Source and under Apache license 2.0
Download last version from https://gitlab.com/GRIN-Global/Wizards and https://gitlab.com/GRIN-
Global/grin-global-apps/mobileapp
Training videos on YouTube:
https://www.youtube.com/channel/UCWexOCDil5l7VJP1WrdEjeQ/playlists
Source code published in: https://gitlab.com/CIP-Development/grin-global_client_international
68. The International Potato Center (known by its Spanish acronym CIP) is
a research-for-development organization with a focus on potato, sweetpotato,
and Andean roots and tubers. CIP is dedicated to delivering sustainable
science-based solutions to the pressing world issues of hunger, poverty,
gender equity, climate change and the preservation of our Earth’s fragile
biodiversity and natural resources.
www.cipotato.org
CIP is a member of CGIAR
CGIAR is a global agriculture research partnership for a food secure future. Its
science is carried out by the 15 research centers who are members of the
CGIAR Consortium in collaboration with hundreds of partner organizations.
www.cgiar.org
Editor's Notes
When I started in 2000 working under in vitro, seed, cryo looks complex in terms of data management