These are the slides for a workshop I gave on June 2, 2014 at USC. They are an introduction to git and version control for my fellow scientists. Note that the branching section draws heavily on the diagrams and material from the Pro Git book (http://git-scm.com/book/), though I reimplemented them for my own uses.
Introducing basic concepts of Git such as working directory, index, staging area, local and remote repository, commits and branches. Also touches on Version Control Systems in general.
In case you get started with Git, but you feel lost or you want to verify what you know, or you simply have no idea what this Git is... try this presentation. We used it several times to get engineers and non-engineers trained. It starts slowly, but also includes fundamentals to understand the difference between traditional source control and Git.
No warranties whatsoever of course. This is based on our experience, trial and error as well as assumptions. Git is complex, but beautiful.
Feedback welcome... and it is CC-BY-SA. So use it, share it, improve it.
P.S: This presentation will be updated often.
Git is a version control system for tracking changes in computer files and coordinating work on those files among multiple people.
This PPT describes most used commands.
Git Tutorial For Beginners | What is Git and GitHub? | DevOps Tools | DevOps ...Simplilearn
This presentation on Git will help you understand version control system, distributed version control system, what is Git, Git vs GitHub, Git architecture, fork & clone, collaborators, branch, merge & rebase, various Git commands and at the end you will also see a demo on Git. Git is a version control system (VCS) for tracking changes in computer files and coordinating work on those files among multiple people. It is primarily used for software development, but it can be used to keep track of changes in any files. This course enables you to learn and solve versioning problems with your files and codes. Now let us get started and understand what is Git along with a demo.
Below topics are explained in this Git presentation:
1. Version control system
2. Distributed version control system
3. What is Git?
4. Git vs GitHub
5. Git architecture
6. Fork and clone
7. Collaborators
8. Branch, merge and rebase
9. Commands in Git
10. Git demo
Why learn DevOps?
Simplilearn’s DevOps training course is designed to help you become a DevOps practitioner and apply the latest in DevOps methodology to automate your software development lifecycle right out of the class. You will master configuration management; continuous integration deployment, delivery and monitoring using DevOps tools such as Git, Docker, Jenkins, Puppet and Nagios in a practical, hands-on and interactive approach. The DevOps training course focuses heavily on the use of Docker containers, a technology that is revolutionizing the way apps are deployed in the cloud today and is a critical skillset to master in the cloud age.
After completing the DevOps training course you will achieve hands-on expertise in various aspects of the DevOps delivery model. The practical learning outcomes of this Devops training course are:
An understanding of DevOps and the modern DevOps toolsets
The ability to automate all aspects of a modern code delivery and deployment pipeline using:
1. Source code management tools
2. Build tools
3. Test automation tools
4. Containerization through Docker
5. Configuration management tools
6. Monitoring tools
Who should take this course?
DevOps career opportunities are thriving worldwide. DevOps was featured as one of the 11 best jobs in America for 2017, according to CBS News, and data from Payscale.com shows that DevOps Managers earn as much as $122,234 per year, with DevOps engineers making as much as $151,461. DevOps jobs are the third-highest tech role ranked by employer demand on Indeed.com but have the second-highest talent deficit.
1. This DevOps training course will be of benefit the following professional roles:
2. Software Developers
3. Technical Project Managers
4. Architects
5. Operations Support
6. Deployment engineers
7. IT managers
8. Development managers
Learn more at: https://www.simplilearn.com/
Git is a distributed revision control system that is widely used in the software development industry. The presentation was used in a lecture delivered in BITS-Pilani, India. The lecture served as a basic crash course on Git.
First, it sets off with a guide to install and configure git on various platforms.
Then, the basic working concepts of Git are explained.
This is followed by a detailed step-by-step guided demonstration of a sample workflow in Git.
Afterwards, Some auxillary commands that are frequently used are discussed briefly.
Finally, basic concepts of branching and merging are detailed.
The presentation ends with a few possible merge conflicts that occur in Git.
Introducing basic concepts of Git such as working directory, index, staging area, local and remote repository, commits and branches. Also touches on Version Control Systems in general.
In case you get started with Git, but you feel lost or you want to verify what you know, or you simply have no idea what this Git is... try this presentation. We used it several times to get engineers and non-engineers trained. It starts slowly, but also includes fundamentals to understand the difference between traditional source control and Git.
No warranties whatsoever of course. This is based on our experience, trial and error as well as assumptions. Git is complex, but beautiful.
Feedback welcome... and it is CC-BY-SA. So use it, share it, improve it.
P.S: This presentation will be updated often.
Git is a version control system for tracking changes in computer files and coordinating work on those files among multiple people.
This PPT describes most used commands.
Git Tutorial For Beginners | What is Git and GitHub? | DevOps Tools | DevOps ...Simplilearn
This presentation on Git will help you understand version control system, distributed version control system, what is Git, Git vs GitHub, Git architecture, fork & clone, collaborators, branch, merge & rebase, various Git commands and at the end you will also see a demo on Git. Git is a version control system (VCS) for tracking changes in computer files and coordinating work on those files among multiple people. It is primarily used for software development, but it can be used to keep track of changes in any files. This course enables you to learn and solve versioning problems with your files and codes. Now let us get started and understand what is Git along with a demo.
Below topics are explained in this Git presentation:
1. Version control system
2. Distributed version control system
3. What is Git?
4. Git vs GitHub
5. Git architecture
6. Fork and clone
7. Collaborators
8. Branch, merge and rebase
9. Commands in Git
10. Git demo
Why learn DevOps?
Simplilearn’s DevOps training course is designed to help you become a DevOps practitioner and apply the latest in DevOps methodology to automate your software development lifecycle right out of the class. You will master configuration management; continuous integration deployment, delivery and monitoring using DevOps tools such as Git, Docker, Jenkins, Puppet and Nagios in a practical, hands-on and interactive approach. The DevOps training course focuses heavily on the use of Docker containers, a technology that is revolutionizing the way apps are deployed in the cloud today and is a critical skillset to master in the cloud age.
After completing the DevOps training course you will achieve hands-on expertise in various aspects of the DevOps delivery model. The practical learning outcomes of this Devops training course are:
An understanding of DevOps and the modern DevOps toolsets
The ability to automate all aspects of a modern code delivery and deployment pipeline using:
1. Source code management tools
2. Build tools
3. Test automation tools
4. Containerization through Docker
5. Configuration management tools
6. Monitoring tools
Who should take this course?
DevOps career opportunities are thriving worldwide. DevOps was featured as one of the 11 best jobs in America for 2017, according to CBS News, and data from Payscale.com shows that DevOps Managers earn as much as $122,234 per year, with DevOps engineers making as much as $151,461. DevOps jobs are the third-highest tech role ranked by employer demand on Indeed.com but have the second-highest talent deficit.
1. This DevOps training course will be of benefit the following professional roles:
2. Software Developers
3. Technical Project Managers
4. Architects
5. Operations Support
6. Deployment engineers
7. IT managers
8. Development managers
Learn more at: https://www.simplilearn.com/
Git is a distributed revision control system that is widely used in the software development industry. The presentation was used in a lecture delivered in BITS-Pilani, India. The lecture served as a basic crash course on Git.
First, it sets off with a guide to install and configure git on various platforms.
Then, the basic working concepts of Git are explained.
This is followed by a detailed step-by-step guided demonstration of a sample workflow in Git.
Afterwards, Some auxillary commands that are frequently used are discussed briefly.
Finally, basic concepts of branching and merging are detailed.
The presentation ends with a few possible merge conflicts that occur in Git.
GitHub is a Git repository hosting service, but it adds many of its own features. While Git is a command line tool, GitHub provides a Web-based graphical interface. It also provides access control and several collaboration features, such as a wikis and basic task management tools for every project.
Simple introduction for development teams familiar with Subversion.
Internal presentation licensed as CC-BY-NC-SA. Attribute to this URL or http://fittl.com/ if you re-publish, do *NOT* use commercially.
GitHub is a Git repository hosting service, but it adds many of its own features. While Git is a command line tool, GitHub provides a Web-based graphical interface. It also provides access control and several collaboration features, such as a wikis and basic task management tools for every project.
Simple introduction for development teams familiar with Subversion.
Internal presentation licensed as CC-BY-NC-SA. Attribute to this URL or http://fittl.com/ if you re-publish, do *NOT* use commercially.
Git Workshop
Daniel Laufer on September 15, 2021
Get an overview of Git and GitHub including what they are, their purpose, how they work, how they interact with each other, and much more.
You will learn about essential Git commands and concepts and go through several short demos using them.
Additionally, you will learn how to collaborate with others on a project using Git and GitHub, and learn how to contribute to open-source projects.
All of this combined will allow students to learn an essential skill that will follow them through their career in tech!
Working with Git – a simple introduction for those used to working with a VCS like Subversion. Explains concepts and shows examples. Feel free to steal slides for your own purposes.
You already know how to use “git status”, “git push”, and “git add” for your personal projects. You know how to work on a team project with git version control. How do you achieve the next level of git mastery and become as productive as possible? Mistakes happen very frequently when coding. Sometimes they can be terrifying mistakes. You’ll learn git commands to un-do your coding mistakes effortlessly. How do you re-order, edit, remove, and squash commits? You’ll understand the differences between all the "git r*” commands: "git rebase", "git revert", "git reset", and "git reflog" and know when and why to use them. We’ll cover how to set up your git environment for a productive workflow, different ways to undo your mistakes in git, and finally, different ways to automate an entire git workflow.
These are the slides for a talk that I gave at PyTN 2015 on a Sunday morning.
Excerpt from slides used in undergraduate software engineering lectures.
Our favorite git tricks, git commands and utilities that make working with git easier.
Updated June 2015.
Advanced Git Techniques: Subtrees, Grafting, and Other Fun StuffAtlassian
Your team has adopted Git, and are happily coding along. But is that all? Can you do more with it? You bet! Join the always-animated Nicola Paolucci to learn advanced techniques for grafting multiple repositories, managing project dependencies with git subtree, splitting commits, and finding the best merge strategy for your staging servers. If you've ever wondered how to collate the histories of different projects, or how to split a sub-directory into it's own project without destroying its history, this session is for you.
My Msc lab held a Pecha Kucha day in 2006, and this is the talk that I gave, on visual design in science (co-written with my wife, a design and art student at the time).
Academics and social media (GSA 2013 Talk)Steven Hamblin
The talk that I will be giving at the Genetics Society of Australasia 2013 conference (or at least, the longer version that I'll be cutting down for the final version). It's an introduction to social media and a discussion of the merits and drawbacks of using social media as a scientist.
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Sérgio Sacani
Since volcanic activity was first discovered on Io from Voyager images in 1979, changes
on Io’s surface have been monitored from both spacecraft and ground-based telescopes.
Here, we present the highest spatial resolution images of Io ever obtained from a groundbased telescope. These images, acquired by the SHARK-VIS instrument on the Large
Binocular Telescope, show evidence of a major resurfacing event on Io’s trailing hemisphere. When compared to the most recent spacecraft images, the SHARK-VIS images
show that a plume deposit from a powerful eruption at Pillan Patera has covered part
of the long-lived Pele plume deposit. Although this type of resurfacing event may be common on Io, few have been detected due to the rarity of spacecraft visits and the previously low spatial resolution available from Earth-based telescopes. The SHARK-VIS instrument ushers in a new era of high resolution imaging of Io’s surface using adaptive
optics at visible wavelengths.
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
Cancer cell metabolism: special Reference to Lactate PathwayAADYARAJPANDEY1
Normal Cell Metabolism:
Cellular respiration describes the series of steps that cells use to break down sugar and other chemicals to get the energy we need to function.
Energy is stored in the bonds of glucose and when glucose is broken down, much of that energy is released.
Cell utilize energy in the form of ATP.
The first step of respiration is called glycolysis. In a series of steps, glycolysis breaks glucose into two smaller molecules - a chemical called pyruvate. A small amount of ATP is formed during this process.
Most healthy cells continue the breakdown in a second process, called the Kreb's cycle. The Kreb's cycle allows cells to “burn” the pyruvates made in glycolysis to get more ATP.
The last step in the breakdown of glucose is called oxidative phosphorylation (Ox-Phos).
It takes place in specialized cell structures called mitochondria. This process produces a large amount of ATP. Importantly, cells need oxygen to complete oxidative phosphorylation.
If a cell completes only glycolysis, only 2 molecules of ATP are made per glucose. However, if the cell completes the entire respiration process (glycolysis - Kreb's - oxidative phosphorylation), about 36 molecules of ATP are created, giving it much more energy to use.
IN CANCER CELL:
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
introduction to WARBERG PHENOMENA:
WARBURG EFFECT Usually, cancer cells are highly glycolytic (glucose addiction) and take up more glucose than do normal cells from outside.
Otto Heinrich Warburg (; 8 October 1883 – 1 August 1970) In 1931 was awarded the Nobel Prize in Physiology for his "discovery of the nature and mode of action of the respiratory enzyme.
WARNBURG EFFECT : cancer cells under aerobic (well-oxygenated) conditions to metabolize glucose to lactate (aerobic glycolysis) is known as the Warburg effect. Warburg made the observation that tumor slices consume glucose and secrete lactate at a higher rate than normal tissues.
Richard's entangled aventures in wonderlandRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Earliest Galaxies in the JADES Origins Field: Luminosity Function and Cosmic ...Sérgio Sacani
We characterize the earliest galaxy population in the JADES Origins Field (JOF), the deepest
imaging field observed with JWST. We make use of the ancillary Hubble optical images (5 filters
spanning 0.4−0.9µm) and novel JWST images with 14 filters spanning 0.8−5µm, including 7 mediumband filters, and reaching total exposure times of up to 46 hours per filter. We combine all our data
at > 2.3µm to construct an ultradeep image, reaching as deep as ≈ 31.4 AB mag in the stack and
30.3-31.0 AB mag (5σ, r = 0.1” circular aperture) in individual filters. We measure photometric
redshifts and use robust selection criteria to identify a sample of eight galaxy candidates at redshifts
z = 11.5 − 15. These objects show compact half-light radii of R1/2 ∼ 50 − 200pc, stellar masses of
M⋆ ∼ 107−108M⊙, and star-formation rates of SFR ∼ 0.1−1 M⊙ yr−1
. Our search finds no candidates
at 15 < z < 20, placing upper limits at these redshifts. We develop a forward modeling approach to
infer the properties of the evolving luminosity function without binning in redshift or luminosity that
marginalizes over the photometric redshift uncertainty of our candidate galaxies and incorporates the
impact of non-detections. We find a z = 12 luminosity function in good agreement with prior results,
and that the luminosity function normalization and UV luminosity density decline by a factor of ∼ 2.5
from z = 12 to z = 14. We discuss the possible implications of our results in the context of theoretical
models for evolution of the dark matter halo mass function.
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...University of Maribor
Slides from:
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Track: Artificial Intelligence
https://www.etran.rs/2024/en/home-english/
This presentation explores a brief idea about the structural and functional attributes of nucleotides, the structure and function of genetic materials along with the impact of UV rays and pH upon them.
31. git commit …
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author: Steven Hamblin
Date: Friday May 9, 20:03:39 2014
Fixed introduction in manuscript.tex
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This is going to be an
AWESOME NATURE PAPER!
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## README
This is the README for
my AWESOME NATURE PAPER.
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commit: 83296a31...
author: Steven Hamblin
Date: Friday May 9, 20:03:39 2014
Fixed introduction in manuscript.tex
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manuscript.tex
• added 2 paragraphs
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git commit -a —>
90. Exercise
1. Make uncommi ed changes.
2. Stash those changes
3. Switch branches. Make changes
and commit.
4. Switch back and retrieve your
stashed changes.