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The Standard Genetic Algorithm Dr. Chrisantha Fernando Systems Biology Centre University of Birmingham
DIY Evolution.
Genotype ,[object Object],[object Object],1101000101110101 1101011111110101 0.2, 0.5, 0.2, 0.83, 0.01, 0.3 0.6, 0.1, 0.5, 0.8, 0.9, 1.0 Represents length of  left leg.  Size of head, etc…
Evaluation  ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
A Trivial Example ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],I. Harvey
So first initialize a population ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],I. Harvey
Main Loop ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],I. Harvey
More complicated Evaluations ,[object Object],Dario Floreano’s Lab
Even More Complicated Evaluations
Problems in Practice ,[object Object],[object Object]
Selection Methods ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
[object Object],0 2
Elitism ,[object Object],[object Object],[object Object]
Mutation (Asexual Reproduction) ,[object Object],[object Object],[object Object]
Recombination (Sexual Reproduction) 10100010 000111 00000011 101111 Parent A Parent B 10100010101111 00000011000111 1-point random equal crossover 0 01 0001 01 00111 Uniform crossover
The Competing Conventions Problem ,[object Object],[object Object],Head, Eye, Face,  Head Face, Eye, Leg,  Leg OK, so two heads, and two  legs. Sometimes competing conventions can help, some- times it can hinder.
Schema Theorem ,[object Object],[object Object]
A Black Art ,[object Object],[object Object]
Relationship to Real Genomes ,[object Object]
Homework. I’m happy to help if you need.  [email_address] ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]

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