This document introduces evidence-based research (EBR). It discusses the scientific ideal of building upon past knowledge and systematically reviewing existing evidence before embarking on new research. However, the evidence shows researchers rarely use a systematic or transparent approach. To address this, an international group established the Evidence-Based Research Network to implement systematicity and transparency in all research phases through initiatives like the EVBRES COST action. Adopting an evidence-based approach could help prevent research waste, improve resource allocation, reduce errors, and restore trust by focusing on research that is relevant, necessary, and placed in proper context of prior results.
Klara Brunnhuber: Research Waste when Justifying New ResearchCaroline Blaine
Klara Brunnhuber, Vice Chair of EVBRES COST Action on how researchers currently justify a new study and why this lack of a systematic and transparent approach leads to research waste.
Hans Lund: Background and Introduction to the COST Action EVBRESCaroline Blaine
Feb 2019: Prof Hans Lund's presentation on the background to what EVBRES is, why it is important and its main aims. See www.evbres.eu for more information.
Klara Brunnhuber: Research Waste when Justifying New ResearchCaroline Blaine
Klara Brunnhuber, Vice Chair of EVBRES COST Action on how researchers currently justify a new study and why this lack of a systematic and transparent approach leads to research waste.
Hans Lund: Background and Introduction to the COST Action EVBRESCaroline Blaine
Feb 2019: Prof Hans Lund's presentation on the background to what EVBRES is, why it is important and its main aims. See www.evbres.eu for more information.
HEALTHCARE RESEARCH METHODS: Secondary and tertiary StudiesDr. Khaled OUANES
Secondary analyses are based on the use of pre-existing data sets and usually the researcher conducting the statistical analysis has not had any contact with the participants whose data are being examined.
A systematic review is, on the other hand, the thorough compilation and summary of all publications relevant to a particular research topic.
Research requires properly planned methodology. I would like to recommend that researchers to focus on these 4 critical steps. If these steps are fulfilled, you will find it easy to conduct your research.
The Process of Health Research and literature reviewsDr. Khaled OUANES
Identifying a study topic is often the most challengingpart of a research project.Each of the possible study topics has its own set of virtues and shortcomings.
What is Research
The search for knowledge is closely linked to the object of study; that is, to the reconstruction of the facts that will provide an explanation to an observed event and that at first sight can be considered as a problem. It is very human to seek answers and satisfy our curiosity. Let’s talk about research.
Research is the careful consideration of study regarding a particular concern or problem using scientific methods. According to the American sociologist Earl Robert Babbie, “research is a systematic inquiry to describe, explain, predict, and control the observed phenomenon. It involves inductive and deductive methods.”
Inductive methods analyze an observed event, while deductive methods verify the observed event. Inductive approaches are associated with qualitative research, and deductive methods are more commonly associated with quantitative analysis.
Research is conducted with a purpose to:
Identify potential and new customers
Understand existing customers
Set pragmatic goals
Develop productive market strategies
Address business challenges
Put together a business expansion plan
Identify new business opportunities
What are the characteristics of research?
Good research follows a systematic approach to capture accurate data. Researchers need to practice ethics and a code of conduct while making observations or drawing conclusions.
The analysis is based on logical reasoning and involves both inductive and deductive methods.
Real-time data and knowledge is derived from actual observations in natural settings.
There is an in-depth analysis of all data collected so that there are no anomalies associated with it.
It creates a path for generating new questions. Existing data helps create more research opportunities.
It is analytical and uses all the available data so that there is no ambiguity in inference.
Accuracy is one of the most critical aspects of research. The information must be accurate and correct. For example, laboratories provide a controlled environment to collect data. Accuracy is measured in the instruments used, the calibrations of instruments or tools, and the experiment’s final result.
What is the purpose of research?
There are three main purposes:
Exploratory: As the name suggests, researchers conduct exploratory studies to explore a group of questions. The answers and analytics may not offer a conclusion to the perceived problem. It is undertaken to handle new problem areas that haven’t been explored before. This exploratory process lays the foundation
Theoretical Research
Theoretical research, also referred to as pure or basic research, focuses on generating knowledge, regardless of its practical application. Here, data collection is used to generate new general concepts for a better understanding of a particular field or to answer a theoretical research question.
Results of this kind are usually oriented towards the formulation of theories and are usually based on documentary analysis, the developme
HEALTHCARE RESEARCH METHODS: Secondary and tertiary StudiesDr. Khaled OUANES
Secondary analyses are based on the use of pre-existing data sets and usually the researcher conducting the statistical analysis has not had any contact with the participants whose data are being examined.
A systematic review is, on the other hand, the thorough compilation and summary of all publications relevant to a particular research topic.
Research requires properly planned methodology. I would like to recommend that researchers to focus on these 4 critical steps. If these steps are fulfilled, you will find it easy to conduct your research.
The Process of Health Research and literature reviewsDr. Khaled OUANES
Identifying a study topic is often the most challengingpart of a research project.Each of the possible study topics has its own set of virtues and shortcomings.
What is Research
The search for knowledge is closely linked to the object of study; that is, to the reconstruction of the facts that will provide an explanation to an observed event and that at first sight can be considered as a problem. It is very human to seek answers and satisfy our curiosity. Let’s talk about research.
Research is the careful consideration of study regarding a particular concern or problem using scientific methods. According to the American sociologist Earl Robert Babbie, “research is a systematic inquiry to describe, explain, predict, and control the observed phenomenon. It involves inductive and deductive methods.”
Inductive methods analyze an observed event, while deductive methods verify the observed event. Inductive approaches are associated with qualitative research, and deductive methods are more commonly associated with quantitative analysis.
Research is conducted with a purpose to:
Identify potential and new customers
Understand existing customers
Set pragmatic goals
Develop productive market strategies
Address business challenges
Put together a business expansion plan
Identify new business opportunities
What are the characteristics of research?
Good research follows a systematic approach to capture accurate data. Researchers need to practice ethics and a code of conduct while making observations or drawing conclusions.
The analysis is based on logical reasoning and involves both inductive and deductive methods.
Real-time data and knowledge is derived from actual observations in natural settings.
There is an in-depth analysis of all data collected so that there are no anomalies associated with it.
It creates a path for generating new questions. Existing data helps create more research opportunities.
It is analytical and uses all the available data so that there is no ambiguity in inference.
Accuracy is one of the most critical aspects of research. The information must be accurate and correct. For example, laboratories provide a controlled environment to collect data. Accuracy is measured in the instruments used, the calibrations of instruments or tools, and the experiment’s final result.
What is the purpose of research?
There are three main purposes:
Exploratory: As the name suggests, researchers conduct exploratory studies to explore a group of questions. The answers and analytics may not offer a conclusion to the perceived problem. It is undertaken to handle new problem areas that haven’t been explored before. This exploratory process lays the foundation
Theoretical Research
Theoretical research, also referred to as pure or basic research, focuses on generating knowledge, regardless of its practical application. Here, data collection is used to generate new general concepts for a better understanding of a particular field or to answer a theoretical research question.
Results of this kind are usually oriented towards the formulation of theories and are usually based on documentary analysis, the developme
This presentation describes the importance of literature review, how to run literature search, and how to write it. Tools to manage references are also covered.
This presentation explores a brief idea about the structural and functional attributes of nucleotides, the structure and function of genetic materials along with the impact of UV rays and pH upon them.
Slide 1: Title Slide
Extrachromosomal Inheritance
Slide 2: Introduction to Extrachromosomal Inheritance
Definition: Extrachromosomal inheritance refers to the transmission of genetic material that is not found within the nucleus.
Key Components: Involves genes located in mitochondria, chloroplasts, and plasmids.
Slide 3: Mitochondrial Inheritance
Mitochondria: Organelles responsible for energy production.
Mitochondrial DNA (mtDNA): Circular DNA molecule found in mitochondria.
Inheritance Pattern: Maternally inherited, meaning it is passed from mothers to all their offspring.
Diseases: Examples include Leber’s hereditary optic neuropathy (LHON) and mitochondrial myopathy.
Slide 4: Chloroplast Inheritance
Chloroplasts: Organelles responsible for photosynthesis in plants.
Chloroplast DNA (cpDNA): Circular DNA molecule found in chloroplasts.
Inheritance Pattern: Often maternally inherited in most plants, but can vary in some species.
Examples: Variegation in plants, where leaf color patterns are determined by chloroplast DNA.
Slide 5: Plasmid Inheritance
Plasmids: Small, circular DNA molecules found in bacteria and some eukaryotes.
Features: Can carry antibiotic resistance genes and can be transferred between cells through processes like conjugation.
Significance: Important in biotechnology for gene cloning and genetic engineering.
Slide 6: Mechanisms of Extrachromosomal Inheritance
Non-Mendelian Patterns: Do not follow Mendel’s laws of inheritance.
Cytoplasmic Segregation: During cell division, organelles like mitochondria and chloroplasts are randomly distributed to daughter cells.
Heteroplasmy: Presence of more than one type of organellar genome within a cell, leading to variation in expression.
Slide 7: Examples of Extrachromosomal Inheritance
Four O’clock Plant (Mirabilis jalapa): Shows variegated leaves due to different cpDNA in leaf cells.
Petite Mutants in Yeast: Result from mutations in mitochondrial DNA affecting respiration.
Slide 8: Importance of Extrachromosomal Inheritance
Evolution: Provides insight into the evolution of eukaryotic cells.
Medicine: Understanding mitochondrial inheritance helps in diagnosing and treating mitochondrial diseases.
Agriculture: Chloroplast inheritance can be used in plant breeding and genetic modification.
Slide 9: Recent Research and Advances
Gene Editing: Techniques like CRISPR-Cas9 are being used to edit mitochondrial and chloroplast DNA.
Therapies: Development of mitochondrial replacement therapy (MRT) for preventing mitochondrial diseases.
Slide 10: Conclusion
Summary: Extrachromosomal inheritance involves the transmission of genetic material outside the nucleus and plays a crucial role in genetics, medicine, and biotechnology.
Future Directions: Continued research and technological advancements hold promise for new treatments and applications.
Slide 11: Questions and Discussion
Invite Audience: Open the floor for any questions or further discussion on the topic.
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
In this webinar we give an overview of advanced applications of the IVM system in preclinical research. IVIM technology is a provider of all-in-one intravital microscopy systems and solutions optimized for in vivo imaging of live animal models at sub-micron resolution. The system’s unique features and user-friendly software enables researchers to probe fast dynamic biological processes such as immune cell tracking, cell-cell interaction as well as vascularization and tumor metastasis with exceptional detail. This webinar will also give an overview of IVM being utilized in drug development, offering a view into the intricate interaction between drugs/nanoparticles and tissues in vivo and allows for the evaluation of therapeutic intervention in a variety of tissues and organs. This interdisciplinary collaboration continues to drive the advancements of novel therapeutic strategies.
Cancer cell metabolism: special Reference to Lactate PathwayAADYARAJPANDEY1
Normal Cell Metabolism:
Cellular respiration describes the series of steps that cells use to break down sugar and other chemicals to get the energy we need to function.
Energy is stored in the bonds of glucose and when glucose is broken down, much of that energy is released.
Cell utilize energy in the form of ATP.
The first step of respiration is called glycolysis. In a series of steps, glycolysis breaks glucose into two smaller molecules - a chemical called pyruvate. A small amount of ATP is formed during this process.
Most healthy cells continue the breakdown in a second process, called the Kreb's cycle. The Kreb's cycle allows cells to “burn” the pyruvates made in glycolysis to get more ATP.
The last step in the breakdown of glucose is called oxidative phosphorylation (Ox-Phos).
It takes place in specialized cell structures called mitochondria. This process produces a large amount of ATP. Importantly, cells need oxygen to complete oxidative phosphorylation.
If a cell completes only glycolysis, only 2 molecules of ATP are made per glucose. However, if the cell completes the entire respiration process (glycolysis - Kreb's - oxidative phosphorylation), about 36 molecules of ATP are created, giving it much more energy to use.
IN CANCER CELL:
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
introduction to WARBERG PHENOMENA:
WARBURG EFFECT Usually, cancer cells are highly glycolytic (glucose addiction) and take up more glucose than do normal cells from outside.
Otto Heinrich Warburg (; 8 October 1883 – 1 August 1970) In 1931 was awarded the Nobel Prize in Physiology for his "discovery of the nature and mode of action of the respiratory enzyme.
WARNBURG EFFECT : cancer cells under aerobic (well-oxygenated) conditions to metabolize glucose to lactate (aerobic glycolysis) is known as the Warburg effect. Warburg made the observation that tumor slices consume glucose and secrete lactate at a higher rate than normal tissues.
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
2. Outline
1. Definition of Evidence-Based Research (EBR)
2. The Scientific Ideal
3. The Assumption
4. The Evidence
5. The Suggested Solution
6. The Impact
3.
4. The scientific ideal (1)
"If I have seen farther it is by
standing on the
shoulders of giants"
• Sir Isaac Newton wrote these famous words in
a letter to Robert Hooke on 15th February 1676,
referring to influential scientists before him such
as Copernicus, Galilei and Kepler.
‘Newton’, Sculpture by Sir Eduardo Paolozzi
Science is cumulative, with each new
discovery dependent on previous knowledge
5. The scientific ideal (2)
“If, as is sometimes supposed, science consisted in nothing
but the laborious accumulation of facts, it would soon come to
a standstill, crushed, as it were, under its own weight……
The work which deserves, but I am afraid does not always
receive, the most credit is that in which discovery and
explanation go hand in hand, in which not only are new facts
presented, but their relation to old ones is pointed out.”
Lord Rayleigh at the 54th meeting of the
British Association for the Advancement
of Science held in Montreal in 1884.
(Thanks to I. Chalmers, LV Hedges, H Cooper, 2002)
Each new result should be interpreted in the context
of earlier research
6. The scientific ideal (3)
“Why do scientists think that new research is better, or more
insightful, or more powerful? The underlying assumption must be
that new studies will incorporate and improve upon lessons
learned from earlier work. Novelty in and of itself is shallow without
links to the past….For science to be cumulative, an intermediate
step between past and future research is necessary:
SYNTHESIS OF EXISTING EVIDENCE”
Harvard University Press 1984
All new studies should be based on a systematic
review of earlier similar studies
9. The evidence (1)
How often do scientific authors
refer to the totality of earlier
research?
• 55% cited no trials even
though they could
potentially refer to 3 or
more studies within the
same area
• the median number of
references for earlier
studies was consistently 2
Robinson KA and Goodman SN, Ann Intern Med. 2011
A systematic and transparent
approach is rarely used when
referencing earlier similar trials
10. The evidence (2)
Are systematic reviews of existing studies
used to see if a new study is required?
• Meta‐epidemiological, descriptive
cross‐sectional study analysing RCTs
published in high impact anaesthesiology
journals between 2014 and 2016.
• Less than ⅕ explicitly mentioned a
systematic review as justification for the new
study
• 44% did not cite a single systematic review
Engelking A, Cavar M and Puljak L. Eur J Pain. 2018
A systematic and transparent
approach is rarely used to justify new
studies
11. The evidence (3)
Do previous systematic reviews guide the
research agenda?
• Retrospective study using application for
funding to see if a systematic review used
in the planning and design of new RCTs
• 37 trials (77.1%) referenced a SR
• 20 of these (i.e. 41.7% of the total) used
information in the systematic review in the
design or planning of the new study
Bhurke S et al., BMC Med Res Methodol. 2015
A systematic and transparent approach
is rarely used to design new studies
12. The evidence (4)
How often do scientific authors put their
results in the context of earlier similar
research?
• Retrospective study showed that hardly
any randomised studies published in
the month of May in the top 5 high
impact journals contained an updated
systematic review integrating the new
results, and a large proportion made no
systematic attempt to set the results in
context.
Clarke M and Hopewell S, J Bahrain Medical Society. 2013
Classification of Discussion sections in reports of randomised studies
published in May in Annals of Internal Medicine, BMJ, JAMA, Lancet
and NEJM
A systematic and transparent
approach is rarely used when placing
new results in the context of existing
results from earlier similar trials
13. Some thoughts
• To embark on research without systematically reviewing the evidence of
what is already known, particularly when the research involves people or
animals, is unethical, unscientific, and wasteful.
• We fully acknowledge that most of the time clinical researchers refer to
previous studies and try to do it correctly - however, the evidence shows
that researchers, research funders, regulators, sponsors and publishers
of research fail to use earlier research systematically and transparently
when preparing to start, fund, regulate, sponsor or publish the results of
new studies.
14. The suggested solution
• To implement «systematicity» and «transparency» in all phases of research.
• To make sure that research is valuable, i.e. “relevant” and “necessary”.
• To achieve this, an international group of researchers established the Evidence-
Based Research Network (EBRNetwork) in Bergen in December 2014.
• EVBRES (EVidence-Based RESearch) is 4 year (2018-2022) EU-funded COST
action aimed at creating an international European-based network to raise
awareness of the need to use evidence syntheses when planning new studies and
when placing new results in context.
• Sustainability of EVBRES is secured by the EBRNetwork.
15. The impact
By building on the existing body of evidence and presenting results in
context, an Evidenced-Based Research approach will:
• help prevent research waste by making research more relevant, more
ethical and more worthwhile
• focus money spent on research improving resource allocation
• reduce false positives (type 1 error) and medical reversals
• make better evidence available for informed choices
• help with how clinical trials are reported in the media
• restore end user trust in research.
Stakeholders (especially clinical researchers) will need to invest in
acquiring the knowledge and skills to be evidence-based, but in
return will gain more interesting and relevant research.
16. The impact
In 1994 Prof. Doug Altman
expressed the need for less but
better research.
Evidence-Based Research will help
make this a reality:
• Less research waste
• Research that is truly necessary
and relevant, addressing the
needs of society today.
“We need less research,
better research, and
research done for the right
reasons”.
Professor Doug Altman, 1994