The document discusses the different types of bonding mechanisms that hold atoms together in solids, including ionic bonding, covalent bonding, metallic bonding, van der Waals bonding, and hydrogen bonding. Ionic bonding involves the transfer of electrons between metals and nonmetals, covalent bonding involves the sharing of electrons between nonmetals, and metallic bonding involves the delocalization of electrons among metal atoms. Weaker van der Waals forces result from induced dipole interactions between molecules. Hydrogen bonding is a special type of dipole-dipole interaction that occurs when hydrogen is bonded to highly electronegative atoms like oxygen or fluorine.
A non-covalent interaction differs from a covalent bond in that it does not involve the sharing of electrons, but rather involves more dispersed variations of electromagnetic interactions between molecules or within a molecule.
DNA supercoiling refers to the over- or under-winding of a DNA strand, and is an expression of the strain on that strand.Certain enzymes such as topoisomerases are able to change DNA topology to facilitate functions such as DNA replication or transcription
A non-covalent interaction differs from a covalent bond in that it does not involve the sharing of electrons, but rather involves more dispersed variations of electromagnetic interactions between molecules or within a molecule.
DNA supercoiling refers to the over- or under-winding of a DNA strand, and is an expression of the strain on that strand.Certain enzymes such as topoisomerases are able to change DNA topology to facilitate functions such as DNA replication or transcription
This presentation gives you a detailed information about the swiss prot database that comes under UniProtKB. It also covers TrEMBL: a computer annotated supplement to Swiss-Prot.
this presentation is about bioinformatics. the contents of bioinformatics are as under:
1.Introduction to bioinformatics.
2.Why bioinformatics is necessary?
3.Goals of bioinformatics
4.Field of bioinformatics
5.Where bioinformatics help?
6.Applications of bioinformatics
7.Software and tools of bioinformatics
8.References
INTRODUCTION
WHAT IS DATA AND DATABASE?
WHAT IS BIOLOGICAL DATABASE?
TYPES OF BIOLOGICAL DATABASE
PRIMARY DATABASE
Nucleic acid sequence database
Protein sequence database
SECONDARY DATABASE
COMPOSITE DATABASE
TERTIARY DATABASE
WHY NEED?
CONCLUSION
REFRENCES
This presentation gives you a detailed information about the swiss prot database that comes under UniProtKB. It also covers TrEMBL: a computer annotated supplement to Swiss-Prot.
this presentation is about bioinformatics. the contents of bioinformatics are as under:
1.Introduction to bioinformatics.
2.Why bioinformatics is necessary?
3.Goals of bioinformatics
4.Field of bioinformatics
5.Where bioinformatics help?
6.Applications of bioinformatics
7.Software and tools of bioinformatics
8.References
INTRODUCTION
WHAT IS DATA AND DATABASE?
WHAT IS BIOLOGICAL DATABASE?
TYPES OF BIOLOGICAL DATABASE
PRIMARY DATABASE
Nucleic acid sequence database
Protein sequence database
SECONDARY DATABASE
COMPOSITE DATABASE
TERTIARY DATABASE
WHY NEED?
CONCLUSION
REFRENCES
element of matter – The Atom, Bohr Model, Heisenberg’s uncertainty principlegkumarouct
In order to understand the structure of materials and its
correlation to property, we have to start form the basic
element of matter – The Atom,
The Bohr Model, Heisenberg’s uncertainty principle, Laws of Quantum mechanics, Orbital shape and quantum numbers, Atomic Bonding, Lennard-Jones potential
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
In this webinar we give an overview of advanced applications of the IVM system in preclinical research. IVIM technology is a provider of all-in-one intravital microscopy systems and solutions optimized for in vivo imaging of live animal models at sub-micron resolution. The system’s unique features and user-friendly software enables researchers to probe fast dynamic biological processes such as immune cell tracking, cell-cell interaction as well as vascularization and tumor metastasis with exceptional detail. This webinar will also give an overview of IVM being utilized in drug development, offering a view into the intricate interaction between drugs/nanoparticles and tissues in vivo and allows for the evaluation of therapeutic intervention in a variety of tissues and organs. This interdisciplinary collaboration continues to drive the advancements of novel therapeutic strategies.
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
Richard's entangled aventures in wonderlandRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Multi-source connectivity as the driver of solar wind variability in the heli...Sérgio Sacani
The ambient solar wind that flls the heliosphere originates from multiple
sources in the solar corona and is highly structured. It is often described
as high-speed, relatively homogeneous, plasma streams from coronal
holes and slow-speed, highly variable, streams whose source regions are
under debate. A key goal of ESA/NASA’s Solar Orbiter mission is to identify
solar wind sources and understand what drives the complexity seen in the
heliosphere. By combining magnetic feld modelling and spectroscopic
techniques with high-resolution observations and measurements, we show
that the solar wind variability detected in situ by Solar Orbiter in March
2022 is driven by spatio-temporal changes in the magnetic connectivity to
multiple sources in the solar atmosphere. The magnetic feld footpoints
connected to the spacecraft moved from the boundaries of a coronal hole
to one active region (12961) and then across to another region (12957). This
is refected in the in situ measurements, which show the transition from fast
to highly Alfvénic then to slow solar wind that is disrupted by the arrival of
a coronal mass ejection. Our results describe solar wind variability at 0.5 au
but are applicable to near-Earth observatories.
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Professional air quality monitoring systems provide immediate, on-site data for analysis, compliance, and decision-making.
Monitor common gases, weather parameters, particulates.
Cancer cell metabolism: special Reference to Lactate PathwayAADYARAJPANDEY1
Normal Cell Metabolism:
Cellular respiration describes the series of steps that cells use to break down sugar and other chemicals to get the energy we need to function.
Energy is stored in the bonds of glucose and when glucose is broken down, much of that energy is released.
Cell utilize energy in the form of ATP.
The first step of respiration is called glycolysis. In a series of steps, glycolysis breaks glucose into two smaller molecules - a chemical called pyruvate. A small amount of ATP is formed during this process.
Most healthy cells continue the breakdown in a second process, called the Kreb's cycle. The Kreb's cycle allows cells to “burn” the pyruvates made in glycolysis to get more ATP.
The last step in the breakdown of glucose is called oxidative phosphorylation (Ox-Phos).
It takes place in specialized cell structures called mitochondria. This process produces a large amount of ATP. Importantly, cells need oxygen to complete oxidative phosphorylation.
If a cell completes only glycolysis, only 2 molecules of ATP are made per glucose. However, if the cell completes the entire respiration process (glycolysis - Kreb's - oxidative phosphorylation), about 36 molecules of ATP are created, giving it much more energy to use.
IN CANCER CELL:
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
introduction to WARBERG PHENOMENA:
WARBURG EFFECT Usually, cancer cells are highly glycolytic (glucose addiction) and take up more glucose than do normal cells from outside.
Otto Heinrich Warburg (; 8 October 1883 – 1 August 1970) In 1931 was awarded the Nobel Prize in Physiology for his "discovery of the nature and mode of action of the respiratory enzyme.
WARNBURG EFFECT : cancer cells under aerobic (well-oxygenated) conditions to metabolize glucose to lactate (aerobic glycolysis) is known as the Warburg effect. Warburg made the observation that tumor slices consume glucose and secrete lactate at a higher rate than normal tissues.
This pdf is about the Schizophrenia.
For more details visit on YouTube; @SELF-EXPLANATORY;
https://www.youtube.com/channel/UCAiarMZDNhe1A3Rnpr_WkzA/videos
Thanks...!
2. Energies of Interactions Between Atoms
Ionic bonding
What kind of forces hold the atoms together in a solid?
Ionic bonding
Covalent bonding
Metallic bonding
Van der waals bonding
Hydrogen bonding
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3. Energies of Interactions Between Atoms
• The energy of the crystal is lower than that of the free
atoms by an amount equal to the energy required to
pull the crystal apart into a set of free atoms.
• Binding (cohesive) energy of the crystal.
– NaCl is more stable than a collection of free Na and Cl.– NaCl is more stable than a collection of free Na and Cl.
– Ge crystal is more stable than a collection of free Ge.
Cl Na NaCl
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5. SI. No: Bond Example Nature of interaction
1. Ionic NaCl Transfer of valence electrons
2. Covalent Diamond Sharing electrons
Types of Bonding Mechanisms
2. Covalent Diamond Sharing electrons
3. Metallic Ag, Cu Free electrons
4.
Van der
Waals
N – solid
Electrons remains associated
with original molecule.
5. Hydrogen Ice -
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6. IONIC BONDINGIONIC BONDING
Ionic bonding is the electrostatic force of
attraction between positively and negatively
charged ions (between non-metals and metals).
All ionic compounds are crystalline solids at All ionic compounds are crystalline solids at
room temperature.
NaCl is a typical example of ionic bonding.
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7. • Metallic elements have valence electrons in their outer shell.
• When losing their electrons they become positive ions.
• Electronegative elements tend to acquire additional electrons to
become negative ions or anions.
Na Cl
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8. • Transfer of electron
• Electro positive and electro negative
• Coulomb attractive force
• After interaction: Similar to inert gas – symmetric
charge distribution
• Cohesive energy – 5 to 10 eV
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9. • When the Na+ and Cl- ions approach each other closely
enough so that the orbits of the electron in the ions begin to
overlap with each other, then the electron begins to repel
each other by virtue of the repulsive electrostatic coulomb
force.
• To prevent a violation of the exclusion principle, the closer
together the ions, then the potential energy of the system
increases very rapidly resulting a large repulsive force
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10. Na – 1S2 2S2 2P6 3S1
Na+ – 2P6 Ne
Cl – 1S2 2S2 2P6 3S2 3P5 Cl– – 3P6 Ar
• Na+ surrounded by six Cl– and vice versa
• Binding energy = 7.8 eV
• Eg:- KCl, Al2O3, etc
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11. COVALENT BONDINGCOVALENT BONDING
• Takes place between atoms with small differences in electro
negativity which are close to each other in the periodic table
(between non-metals and non-metals).
• The covalent bonding is formed when the atoms share the
outer shell e– (i.e., s and p e–) rather than by e– transfer.
• Noble gas electron configuration can be attained.• Noble gas electron configuration can be attained.
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13. • Each e– in a shared pair is attracted to both nuclei involved in
the bond.
• e– overlap and attraction of nucleus (proton) and e– in a
hydrogen molecule.
e
e
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15. • Examples: Cl2 , H2O , O2 , N2 , …….
• Sharing of electron
• Total potential energy, U decreases
• Orbitals overlap effectively
• Orbitals are directionally oriented rather
than spherical symmetric.
• p- orbitals are directional
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16. Diamond
• Carbon atom, C – 1s2 2s2 2p2
• Modified to – 1s2 2s1 2px
1 2py
1 2pz
1
since 2s & 2p – energy levels are closer
• 4 unpaired electrons – 4 covalent bonds - equal strength• 4 unpaired electrons – 4 covalent bonds - equal strength
• C-C-C bond angle is 109028’
• C – is sp3 hybridized & form tetrahedron
• Each tetrahedron is covalently bonded to 4 tetrahedron
– form a 3D network shape.
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17. Properties
• Strong bond
• Binding Energy of C = 7.4 eV
• Very hard and brittle• Very hard and brittle
• High Melting and Boiling points
• Poor conductor (but resistivity increases
as temperature increases)
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18. Comparison of Ionic and Covalent BondingComparison of Ionic and Covalent Bonding
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19. METALLIC BONDINGMETALLIC BONDING
• Metallic bonding is found in metal
elements.
• Partial sharing of valence electrons
• electrostatic force of attraction
between positively charged ions andbetween positively charged ions and
delocalized outer electrons.
• Atoms contribute valence electrons
to a common pool.
• Free electron cloud or gas
+
+
+
+
+
+
+
+
+
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21. Sodium - Na
• Na – alkali metal – 1s2 2s2 2p6 3s1
• Two Na atoms come to closes – 3s orbital overlaps
• If 3rd Na atom comes, valence e– occupy 3p state –
(3s & 3p state are closer)
• Na cannot form 2 e– pair with other atoms, since Na• Na cannot form 2 e– pair with other atoms, since Na
have only 1 e–
• Structure of Na – BCC : each Na atom form 1/8th of e–
pair bond with each of its neighbours.
• It is possible only if e– pair resonates among the 8
pair of Na atom.
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22. Properties of Metallic bonding
• Less directional
• Weaker than ionic and covalent
• Binding energy = 1eV to 5eV
• Low Melting and Boling points• Low Melting and Boling points
• High ductile & malleable
• High thermal and electric conductivity
• High optical reflection and absorption
coefficients.
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23. VanVan dder Waals Bonder Waals Bondiningg
• Van Der Waals bonds occur between neutral atoms (He, Ne,
Ar, etc) and molecules (O2 , Cl2 , CO2 , CH4 , etc).
• Dipole interaction between atoms
• Temporary dipoles formed in between adjacent atoms due to
natural fluctuations in the electron density of all molecules.
• Temporary dipoles attract one molecule to another - Van der
Waals' force
• Electric field due to dipole induce dipole moment of
neighbour.
• Dipole – induced dipole interaction – Van der Waals bond
• Dispersion bond
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24. • The shape of a molecule influences its ability to form
temporary dipoles.
• Long thin molecules can pack closer to each other than
molecules that are more spherical.
• The bigger the 'surface area' of a molecule, the greater the
van der Waal's forces will be.
Homonuclear molecules,
such as iodine, develop
temporary dipoles due to
natural fluctuations of electron
density within the molecule
Heteronuclear molecules,
such as H-Cl have permanent
dipoles that attract the opposite
pole in other molecules.
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25. Van der waals interaction occurs generally between
Dipoles formed as the charge centers of one atom displaced
(do not coincides) in the presence of other.
Van der waals interaction occurs generally between
atoms which have noble gas configuration.
van der waals
bonding
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26. Properties of Van der Waals bond-
• Binding energy = 0.1 eV/bond
• Non directional
• Liquified at low temperature
• Very weak force (Van der Waal's forces are of the• Very weak force (Van der Waal's forces are of the
order of 1% of the strength of a covalent bond)
• At room temperature, Ethermal > BE - exist in
gaseous state.
• Very low Melting and Boiling point
• Poor conductor of heat and electricity.
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27. Hydrogen BondıngHydrogen Bondıng
• A hydrogen atom, having one electron, can be covalently bonded to
only one atom. However, the hydrogen atom can involve itself in an
additional electrostatic bond with a second atom of highly
electronegative character such as fluorine or oxygen. This second
bond permits a hydrogen bond between two atoms or strucures.
Hydrogen bonds connect water
molecules in ordinary ice.
Hydrogen bonding is also very
important in proteins and
nucleic acids and therefore in
life processes.
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28. • Interaction (not usual bond)
• Intermolecular rather than intramolecular
• A sub-covalent bonding
• Dipole – dipole interaction
Hydrogen BondıngHydrogen Bondıng
• Dipole – dipole interaction
• Strength – 1% of covalent bond only - varies
from 0.1 to 0.5 eV/atom
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