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CLINICAL BIOCHEMISTRY
By: Neli Syahida Ni'ma
BIOLOGIC SAMPLE
Whole
blood
Serum
Plasm
a Urine
Saliva
Feces
Spinal Synovial
Collecting Specimens
• Most biochemical analyses are made on serum or plasma but
occasionally whole blood is required (e.g. for ‘blood gases’).
• Haemolysis must be avoided when blood is drawn & sample is
processed → affect result (e.g. increases in plasma potassium and
phosphate concentrations and aspartate aminotransferase activity,
owing to leakage from red cells)
• Collecting in an appropriate container !!! → Collecting a blood
specimen into the wrong container can lead to erroneous results
CONTAINER
TYPES OF ANTICOAGULANT
Heparin
• most widely used
• unacceptable for polymerase chain reaction
(PCR) because inhibition of the polymerase
enzyme by this large molecule
EDTA
• Chelating agent of divalent cations (Ca2+ and
Mg2+)
• Preserves the cellular components of blood →
particularly useful for hematologic
examinations, isolation genomic DNA,
qualitative and quantitative virus
determinations by molecular techniques
Na-Citrate
• Citrate tube is rarely acceptable or
chemistry testing but may be
acceptable, usually used for genomic
DNA isolation
Sodium/Potassium Fluoride
• Weak anticoagulant that is often
added as preservative for blood
glucose analyses.
• Often used together with another
anticoagulant (such as potassium
oxalate)
Case
• The laboratory staff were concerned when a serum specimen from an
outpatient due to attend the diabetic clinic was analysed and the following
results were found:
• Investigation was conducted and disclosed that phlebotomist who had
taken the blood had collected the original specimen into a tube containing
(potassium) fluoride and oxalate, the correct container for an accurate
blood glucose measurement, but had then concealed his error by
transferring the sample to a plain tube.
• Explain this case, why inappropriate tube can cause erroneous result!
Potassium 12.2 mmol/L
Sodium 140 mmol/L
Creatinine 84 μmol/L
Calcium 0.34 mmol/L
Phosphate 1.22 mmol/L
ANALYTICAL METHOD
Must be accurate, precise, specific, sensitive
The imprecision of the analysis can be expressed as the CV,
where CV =
𝑆𝐷
𝑚𝑒𝑎𝑛
𝑥 100
ERRORS
Pre-analytical: wrong specimen, mislabelling,
incorrect preservation
Analytical: human or instrumental error
Post-analytical: transcription error
Factors affecting
biochemical result
Factors affecting biochemical result
Environment
• Altitude → blood hemoglobin and hematocrit increased because of
reduced atmospheric PO2
• People living in areas with hard water → statistically significant
increase in serum concentrations of cholesterol, TG, and Mg.
• Individuals who primarily work indoors → lower concentrations of
25-hydroxy vitamin D, → higher serum calcium concentrations and
greater urinary excretion o calcium.
Underlying Medical Condition
• Anxiety → stimulates increased secretion aldosterone, angiotensin,
catecholamines, cortisol, prolactin, renin, somatotropin, TSH, and
vasopressin. Plasma concentrations of albumin, cholesterol, fibrinogen,
glucose, insulin, and lactate also increase
• Shock and Trauma → corticotropin secretion is stimulated to produce 3-
5x increase in the serum cortisol concentration
• Pregnancy →
• Blood volume increase from about 2600 mL early in pregnancy to
3500 mL at about 35 weeks
• Deficiency of iron and ferritin.
• Blindness → In some blind individuals, the normal diurnal variation of
cortisol may or may not persist
Lifestyle
• Recreational drug →
• Morphine increases the activity of amylase, lipase, ALT, AST, ALP,
bilirubin, gastrin, TSH, and prolactin.
• Morphine decreases concentrations of insulin, norepinephrine,
pancreatic polypeptide, and neurotensin.
• Nicotine →
• Increases concentration of epinephrine plasma and the urinary
excretion of catecholamines and their metabolites.
• Increase glucose concentration by 10 mg/dL (0.56 mmol/L) within 10
minutes of smoking a cigarette.
• Affects the body’s immune response (serum IgA, IgG, and IgM levels
are lower in smokers, whereas the IgE concentration is higher)
• Sperm count reduced, abnormal forms of sperm is greater, and
sperm motility is less → fertility decreased
Lifestyle
• Alcohol →
• Ingestion of enough alcohol may increase the blood glucose
concentration by 20% to 50%.
• Chronic alcohol ingestion increased activity o γ-glutamyltransferase
(GGT) → often used as a marker o persistent drinking.
• Chronic alcoholism: abnormal pituitary, adrenocortical, medullary
function.
• Chronic alcoholism increased mean cell volume (MCV) : caused by
decreased folic acid or direct toxicity alcohol on RBC precursor
• Diet →
• Fasting: decreases the variability in the concentrations of many
analytes → to standardize blood collections, particularly lipids
• Vegetarian: concentrations of cholesterol and triglycerides may be
only 2/3 of people with mixed diet
• Malnutrition → total serum protein, albumin, β-globulin concentrations
are reduced
Interpretation
REFERENCE VALUE OR NORMAL VALUE?
What is
normal
anyway?
• The range of the mean ± 2 SD = 95.5% → considered ‘normal’
• The range of the mean ± 3 SD = 99.7% of the total number
Many biological variation follow normal distribution curve
Non normal distribution?
Healthy
Not healthy
Reference value,
not normal value
CHOLESTEROL PROFILE
Mabuchi et al., 2005, Cutoff Point Separating
Affected and Unaffected Familial
Hypercholesterolemic Patients
SIGNIFICANT CHANGES
Between measurement there will always be variation: analytical
variation & biological variation. So, how to differ whether different
result is due to variation or significant changes?
SD = 𝑆𝐷𝐴
2
+ 𝑆𝐷𝐵
2 In which
SDA = standard deviation of analytical
SDB = standard deviation of biological
If the difference between two test results > 2.8 X SD, the difference
can be regarded as of potential clinical significance: the
probability of this difference being a result of analytical and
biological variation is <0.05
CLINICAL SENSITIVITY & SPECIFITY
TEST RESULT
Positive Negative
REALITY
Positive
True Positive (TP) False Negative (FN)
Negative
False Positive (FP) True Negative (TN)
Ideal diagnostic test would be 100% sensitive and 100% specific. But practically, it’s impossible!! Factors that increase
specificity tend to decrease the sensitivity, and vice versa
Upper limit range plasma free
thyroxine = 26 pmol/L
To diagnose hyperthyroidism
If set > 32 pmol/L →
specificity 100%, sensitivity
low (many false negative)
If set > 20 pmol/L →
sensitivity 100%, specificity
low (many false positive)
Win-win solution:
𝐸𝑓𝑓𝑖𝑐𝑖𝑒𝑛𝑐𝑦 =
𝑇𝑃 + 𝑇𝑁
𝑇𝑜𝑡𝑎𝑙 𝑡𝑒𝑠𝑡
𝑥 100%
PREDICTIVE VALUES
• To answer: given a positive result, what is the likelihood that a patient actually has the disease ?
• Predictive value combines disease prevalence with the test’s sensitivity and specificity.
Thank you

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Biokimia klinik week 2

  • 3. Collecting Specimens • Most biochemical analyses are made on serum or plasma but occasionally whole blood is required (e.g. for ‘blood gases’). • Haemolysis must be avoided when blood is drawn & sample is processed → affect result (e.g. increases in plasma potassium and phosphate concentrations and aspartate aminotransferase activity, owing to leakage from red cells) • Collecting in an appropriate container !!! → Collecting a blood specimen into the wrong container can lead to erroneous results
  • 5. TYPES OF ANTICOAGULANT Heparin • most widely used • unacceptable for polymerase chain reaction (PCR) because inhibition of the polymerase enzyme by this large molecule EDTA • Chelating agent of divalent cations (Ca2+ and Mg2+) • Preserves the cellular components of blood → particularly useful for hematologic examinations, isolation genomic DNA, qualitative and quantitative virus determinations by molecular techniques Na-Citrate • Citrate tube is rarely acceptable or chemistry testing but may be acceptable, usually used for genomic DNA isolation Sodium/Potassium Fluoride • Weak anticoagulant that is often added as preservative for blood glucose analyses. • Often used together with another anticoagulant (such as potassium oxalate)
  • 6. Case • The laboratory staff were concerned when a serum specimen from an outpatient due to attend the diabetic clinic was analysed and the following results were found: • Investigation was conducted and disclosed that phlebotomist who had taken the blood had collected the original specimen into a tube containing (potassium) fluoride and oxalate, the correct container for an accurate blood glucose measurement, but had then concealed his error by transferring the sample to a plain tube. • Explain this case, why inappropriate tube can cause erroneous result! Potassium 12.2 mmol/L Sodium 140 mmol/L Creatinine 84 μmol/L Calcium 0.34 mmol/L Phosphate 1.22 mmol/L
  • 7. ANALYTICAL METHOD Must be accurate, precise, specific, sensitive The imprecision of the analysis can be expressed as the CV, where CV = 𝑆𝐷 𝑚𝑒𝑎𝑛 𝑥 100
  • 8. ERRORS Pre-analytical: wrong specimen, mislabelling, incorrect preservation Analytical: human or instrumental error Post-analytical: transcription error
  • 11. Environment • Altitude → blood hemoglobin and hematocrit increased because of reduced atmospheric PO2 • People living in areas with hard water → statistically significant increase in serum concentrations of cholesterol, TG, and Mg. • Individuals who primarily work indoors → lower concentrations of 25-hydroxy vitamin D, → higher serum calcium concentrations and greater urinary excretion o calcium.
  • 12. Underlying Medical Condition • Anxiety → stimulates increased secretion aldosterone, angiotensin, catecholamines, cortisol, prolactin, renin, somatotropin, TSH, and vasopressin. Plasma concentrations of albumin, cholesterol, fibrinogen, glucose, insulin, and lactate also increase • Shock and Trauma → corticotropin secretion is stimulated to produce 3- 5x increase in the serum cortisol concentration • Pregnancy → • Blood volume increase from about 2600 mL early in pregnancy to 3500 mL at about 35 weeks • Deficiency of iron and ferritin. • Blindness → In some blind individuals, the normal diurnal variation of cortisol may or may not persist
  • 13. Lifestyle • Recreational drug → • Morphine increases the activity of amylase, lipase, ALT, AST, ALP, bilirubin, gastrin, TSH, and prolactin. • Morphine decreases concentrations of insulin, norepinephrine, pancreatic polypeptide, and neurotensin. • Nicotine → • Increases concentration of epinephrine plasma and the urinary excretion of catecholamines and their metabolites. • Increase glucose concentration by 10 mg/dL (0.56 mmol/L) within 10 minutes of smoking a cigarette. • Affects the body’s immune response (serum IgA, IgG, and IgM levels are lower in smokers, whereas the IgE concentration is higher) • Sperm count reduced, abnormal forms of sperm is greater, and sperm motility is less → fertility decreased
  • 14. Lifestyle • Alcohol → • Ingestion of enough alcohol may increase the blood glucose concentration by 20% to 50%. • Chronic alcohol ingestion increased activity o γ-glutamyltransferase (GGT) → often used as a marker o persistent drinking. • Chronic alcoholism: abnormal pituitary, adrenocortical, medullary function. • Chronic alcoholism increased mean cell volume (MCV) : caused by decreased folic acid or direct toxicity alcohol on RBC precursor • Diet → • Fasting: decreases the variability in the concentrations of many analytes → to standardize blood collections, particularly lipids • Vegetarian: concentrations of cholesterol and triglycerides may be only 2/3 of people with mixed diet • Malnutrition → total serum protein, albumin, β-globulin concentrations are reduced
  • 16. REFERENCE VALUE OR NORMAL VALUE? What is normal anyway? • The range of the mean ± 2 SD = 95.5% → considered ‘normal’ • The range of the mean ± 3 SD = 99.7% of the total number Many biological variation follow normal distribution curve Non normal distribution? Healthy Not healthy Reference value, not normal value
  • 17. CHOLESTEROL PROFILE Mabuchi et al., 2005, Cutoff Point Separating Affected and Unaffected Familial Hypercholesterolemic Patients
  • 18. SIGNIFICANT CHANGES Between measurement there will always be variation: analytical variation & biological variation. So, how to differ whether different result is due to variation or significant changes? SD = 𝑆𝐷𝐴 2 + 𝑆𝐷𝐵 2 In which SDA = standard deviation of analytical SDB = standard deviation of biological If the difference between two test results > 2.8 X SD, the difference can be regarded as of potential clinical significance: the probability of this difference being a result of analytical and biological variation is <0.05
  • 19. CLINICAL SENSITIVITY & SPECIFITY TEST RESULT Positive Negative REALITY Positive True Positive (TP) False Negative (FN) Negative False Positive (FP) True Negative (TN) Ideal diagnostic test would be 100% sensitive and 100% specific. But practically, it’s impossible!! Factors that increase specificity tend to decrease the sensitivity, and vice versa Upper limit range plasma free thyroxine = 26 pmol/L To diagnose hyperthyroidism If set > 32 pmol/L → specificity 100%, sensitivity low (many false negative) If set > 20 pmol/L → sensitivity 100%, specificity low (many false positive)
  • 20. Win-win solution: 𝐸𝑓𝑓𝑖𝑐𝑖𝑒𝑛𝑐𝑦 = 𝑇𝑃 + 𝑇𝑁 𝑇𝑜𝑡𝑎𝑙 𝑡𝑒𝑠𝑡 𝑥 100%
  • 21. PREDICTIVE VALUES • To answer: given a positive result, what is the likelihood that a patient actually has the disease ? • Predictive value combines disease prevalence with the test’s sensitivity and specificity.