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ESRI EUROPEAN USER CONFERENCE, 26-28 October 2011, Madrid


Automatic image processing for agriculture
 through specific ENVI modules (add-on)

                                                            L. García-Torres,
                                                     J. J. Caballero-Novella,
                                                           D. Gómez-Candón,
                                                         F. López-Granados

                         Institute for Sustainable Agriculture, CSIC,
                                P.O. Box 4084, 14004- Cordoba, Spain
                                        e-mail: lgarciatorres@ias.csic.es
ESRI EUROPEAN USER CONFERENCE, 26-28 October 2011, Madrid


  Automatic image processing for agriculture through specific ENVI modules
                                  (add-on)
Content
 1) ENVI, a powerful image processing programme

 2) Complementary ENVI modules are NEEDED for Agriculture/ Precision Agriculture
                                (why?/ which?)

 3) Specific ENVI modules (“add-on) developed by IAS-CSIC
        3a. Orchards trees assessment (CLUAS®)
        3b. Herbaceous crop assessment (SARI®)
        3c. Cropping systems classification (CROPCLASS®) and parcel isolation
                 (CROPCLASS++, under development)
        3e. Automatic image georeferentiation/ co-registration AUGEO-2.0®
        3f. Automatic modules integration (AMI, under development)

 4) AIM: to contribute to the automatic designing of agricultural operations through
                 remote images, ENVI and new specific “ENVI-add-on”

 5) Projects, publications, registrations and patents (IAS/ CSIC)
Remote sensing:
       Very useful for agriculture and environment studies
       Highly informative
       Economically feasible at large and reduced scale

                  ONLY IF IMAGE PROCESSING IS FULLY AUTOMATED
                  (adequately managed through specific menus)
ESRI EUROPEAN USER CONFERENCE, 26-28 October 2011, Madrid


    Automatic image processing for agriculture through specific ENVI modules (add-on)


AIM
               To contribute to automate the design of agricultural
                    operation through remote sensing images

WHICH agricultural operations?: ALL,
              seeding, fertilization, herbicide application, etc.


WHAT IS NEEDED?
          Specific modules (add-on) to complete and automate
                       ENVI image processing

Any remote image can provide potentially tremendous amount of information for
farmers, however its processing, sectioning and assessment at reduced scale (micro-
parcel, micro-plot scale) is needed:
         To provide useful/ manageable information
         To achieve the processes economically feasible to be used for farmers......
•   1) ENVI/ Interfaces: many processing options…. But lack specific menus for agricultural
    uses,
ESRI EUROPEAN USER CONFERENCE, 26-28 October 2011, Madrid


2) ENVI/ Interfaces: many processing options. But it lacks specific menus for
agricultural uses…




                                 …so we solved this inconvenience
                                 by adding our own tools.




                                                                          6
ESRI EUROPEAN USER CONFERENCE, 26-28 October 2011, Madrid


  Automatic image processing for agriculture through specific ENVI modules (add-on)
3) AMI: Automatic designing of agricultural operations through
remote images
4. Precision Agriculture through remote sensing
        (sophisticated technology, environmental-friendly, and economics)
                                            a) Spatial variability of biotic (weed
                                           patches) and abiotic (nutrient, water)
                                                            factors

                                                    b) Biotic/ abiotic map


                                                       c) Treatment map


                                           d) Variable rate application equipment



Zones of the plot
      Prescription treatment map
                                           e) Site-specific treatments (micro-plots)
ESRI EUROPEAN USER CONFERENCE, 26-28 October 2011, Madrid

             Automatic image processing for agriculture through specific ENVI modules (add-on)




3) Specific ENVI modules (“add-on) developed by IAS-CSIC
        3a. Orchards trees assessment (CLUAS)

        3b. Herbaceous crop assessment (SARI)

        3c. Cropping systems classification (CROPCLASS )

        3d. Isolation of individual agricultural parcel (CROPCLASS++)

        3e. Automatic image georeferentiation/ co-registration AUGEO-2.0

        3f. Automatic modules integration (AMI, under development)
ESRI EUROPEAN USER CONFERENCE, 26-28 October 2011, Madrid


  Automatic image processing for agriculture through specific ENVI modules (add-on)


3a) Software CLUAS® for Orchards trees assessment
                 (Clustering assessment)

        To assess quantitative agronomic and environmental
               indicators of trees.

        Neighbouring pixels within a range of digital values are
              integrated into groups of defined size.

        Each one of those groups is processed as a unit known as
               “cluster”, representing a single tree.
3a. Software CLUAS® : Assessment of land uses in tree orchards (at tree and parcel
                                                                         level)


                                               Plot     Area     Olive       Vegetat.     Bare soil
                                                        (ha)     trees       Cover          (%)
                                                                   (%)         (%)

                                                A       5.23      24.6%       50.1%         25.2


                                                B       4.65       6.7%       61.1%         32.4

                                                C        3.2      40.9%       54.2%          5.6

                                                D       0.65      32.2%       67.4%          0.4

                                                E       4.31      38.0%       47.1%         15.0



                                                                   IAS- CSIC.
                                           Peña-Barragán et al.2005, Agric., Environment &Ecosystems

                                          García-Torres, L., et al. 2008. Computers & Electronic in
                                                      Agriculture, 61, 179-191
3b. Software SARI® to define and assess “micro-plots”


                                 SARI CHARACTERISTICS




    Microplot length and height is arbitrarily defined.
    Indicators calculated by SARI:
         Integrated pixel digital values (IDV)
         Percentage of pixels (%PI) with DV≠0
    Classify the microplots in defined classes
3b. Software SARI®, Sectioning & Assessment of Remote Images,
              Precision Agriculture (2011a & 2011b)

       To design any agricultural operation at farm/ parcel level

                    (Outcome: input parcel prescription map)




                                                   (
ESRI EUROPEAN USER CONFERENCE, 26-28 October 2011, Madrid


  Automatic image processing for agriculture through specific ENVI modules (add-on)



3c. Cropping systems classification (CROPCLASS®)
                    (Specific ENVI module, “add-on”)


         - Multi-temporal classification of crop fields.

         - User-defined plot size and geometry.

         - Import/export related only to georeferenced coordinates.

         - Spatial and digital information retrieval from each plot.

         - Reports for each plot and the image as a whole.
3c. Software CROPCLASS®: to automatically isolate, classify and analysis
                           each parcel


                                                        High spatial resolution,
                                                        multispectral and
                                                        multi-temporal series
                                                        of images

                                                        1) Plot/ parcel isolation
                                                        2) Assessment and
                                                        export of digital values
                                                        3) Analysis and
                                                        interpretation of “its”
                                                        agricultural status
                                                        4) Export of the
                                                        information generated
ESRI EUROPEAN USER CONFERENCE, 26-28 October 2011, Madrid
          Automatic image processing for agriculture through specific ENVI modules (add-on

                                                 )


3e Automatic image georeferencing/ co-registration AUGEO-2.0®
               (Specific ENVI module, “add-on”)




                                       - Only ATT’s within a defined range are
                                       mutually detected.
                                       - Different colors work as a filter.
                                       - Minimum and maximum distance


                                         (Gómez-Candón et al. 2011c. Precision Agriculture, DOI)


                                                                                             16
3e Automatic image georeferencing/ co-registration, Software AUGEO-2.0®
       STANDARD GEO-REFERENCING               AUGEO GEO-REFERENCING




                                           • Better accuracy
   •   Hard-edge points are difficult to
                                           • Less time-consuming
       find.
   •   More time-consuming


            Hard edge points.                Artificial Terrestrial Targets
ESRI EUROPEAN USER CONFERENCE, 26-28 October 2011, Madrid


  Automatic image processing for agriculture through specific ENVI modules (add-on)
3f. AMI: Automatic Module Integration (under development)




                                            - All previos modules compiled
                                            into one add-on.

                                            - Execution as a sequence.

                                            - Outputs from one module could
                                            serve as input data to another.




                                                                                  18
ESRI EUROPEAN USER CONFERENCE, 26-28 October 2011, Madrid

4) Software CROPCLASS® + AMI:
        to automatically isolate, classify and analysis each parcel managing
        multitemporal images series




                         T=1




                              T=2



                                       T=N



            3f. Automatic modules integration (AMI, under development)         19
ESRI EUROPEAN USER CONFERENCE, 26-28 October 2011, Madrid


  Automatic image processing for agriculture through specific ENVI modules (add-on)

5) Publications, registrations, patents and projects (IAS-CSIC)
        Projects (Spanish Ministry of Science & Innovation)
                         AGL2007- 60926 (2008-2010)
                         AGL2010- 15506 (2011-2013)
        Papers
                 -- CLUAS®, Computers & Electronic in Agriculture, 2008
                 -- AUGEO-2.0®, Precision Agriculture 2011- DOI
                 -- SARI®, Precision Agriculture 2011a (in print)
                 -- SARI®, Precision Agriculture 2011b (in print)
        Registration
                     CLUAS® (2008)
                     SARI® (2008)
                     AUGEO-2.0® (April 2010)
                     CROPCLASS® (March 2011)
        Patents:
                  CLUAS PCT/ ES2008/07001·
                  SARI P200801932/ Nº ES 2 332 567
Automatic image processing for agriculture through specific ENVI modules (add-on)


Final comments

         COULD BE WISE THAT ENVI INCORPORATE
                SPECIFIC MODULES FOR
           AGRICULTURE/ AGRI-ENVIRONMENT?


       Our add-on are free for research groups upon request



        THANK YOU FOR YOUR ATTENTION¡

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Automatic Image Processing for Agriculture through specific ENVI Modules (add-on)

  • 1. ESRI EUROPEAN USER CONFERENCE, 26-28 October 2011, Madrid Automatic image processing for agriculture through specific ENVI modules (add-on) L. García-Torres, J. J. Caballero-Novella, D. Gómez-Candón, F. López-Granados Institute for Sustainable Agriculture, CSIC, P.O. Box 4084, 14004- Cordoba, Spain e-mail: lgarciatorres@ias.csic.es
  • 2. ESRI EUROPEAN USER CONFERENCE, 26-28 October 2011, Madrid Automatic image processing for agriculture through specific ENVI modules (add-on) Content 1) ENVI, a powerful image processing programme 2) Complementary ENVI modules are NEEDED for Agriculture/ Precision Agriculture (why?/ which?) 3) Specific ENVI modules (“add-on) developed by IAS-CSIC 3a. Orchards trees assessment (CLUAS®) 3b. Herbaceous crop assessment (SARI®) 3c. Cropping systems classification (CROPCLASS®) and parcel isolation (CROPCLASS++, under development) 3e. Automatic image georeferentiation/ co-registration AUGEO-2.0® 3f. Automatic modules integration (AMI, under development) 4) AIM: to contribute to the automatic designing of agricultural operations through remote images, ENVI and new specific “ENVI-add-on” 5) Projects, publications, registrations and patents (IAS/ CSIC)
  • 3. Remote sensing: Very useful for agriculture and environment studies Highly informative Economically feasible at large and reduced scale ONLY IF IMAGE PROCESSING IS FULLY AUTOMATED (adequately managed through specific menus)
  • 4. ESRI EUROPEAN USER CONFERENCE, 26-28 October 2011, Madrid Automatic image processing for agriculture through specific ENVI modules (add-on) AIM To contribute to automate the design of agricultural operation through remote sensing images WHICH agricultural operations?: ALL, seeding, fertilization, herbicide application, etc. WHAT IS NEEDED? Specific modules (add-on) to complete and automate ENVI image processing Any remote image can provide potentially tremendous amount of information for farmers, however its processing, sectioning and assessment at reduced scale (micro- parcel, micro-plot scale) is needed: To provide useful/ manageable information To achieve the processes economically feasible to be used for farmers......
  • 5. 1) ENVI/ Interfaces: many processing options…. But lack specific menus for agricultural uses,
  • 6. ESRI EUROPEAN USER CONFERENCE, 26-28 October 2011, Madrid 2) ENVI/ Interfaces: many processing options. But it lacks specific menus for agricultural uses… …so we solved this inconvenience by adding our own tools. 6
  • 7. ESRI EUROPEAN USER CONFERENCE, 26-28 October 2011, Madrid Automatic image processing for agriculture through specific ENVI modules (add-on) 3) AMI: Automatic designing of agricultural operations through remote images
  • 8. 4. Precision Agriculture through remote sensing (sophisticated technology, environmental-friendly, and economics) a) Spatial variability of biotic (weed patches) and abiotic (nutrient, water) factors b) Biotic/ abiotic map c) Treatment map d) Variable rate application equipment Zones of the plot Prescription treatment map e) Site-specific treatments (micro-plots)
  • 9. ESRI EUROPEAN USER CONFERENCE, 26-28 October 2011, Madrid Automatic image processing for agriculture through specific ENVI modules (add-on) 3) Specific ENVI modules (“add-on) developed by IAS-CSIC 3a. Orchards trees assessment (CLUAS) 3b. Herbaceous crop assessment (SARI) 3c. Cropping systems classification (CROPCLASS ) 3d. Isolation of individual agricultural parcel (CROPCLASS++) 3e. Automatic image georeferentiation/ co-registration AUGEO-2.0 3f. Automatic modules integration (AMI, under development)
  • 10. ESRI EUROPEAN USER CONFERENCE, 26-28 October 2011, Madrid Automatic image processing for agriculture through specific ENVI modules (add-on) 3a) Software CLUAS® for Orchards trees assessment (Clustering assessment) To assess quantitative agronomic and environmental indicators of trees. Neighbouring pixels within a range of digital values are integrated into groups of defined size. Each one of those groups is processed as a unit known as “cluster”, representing a single tree.
  • 11. 3a. Software CLUAS® : Assessment of land uses in tree orchards (at tree and parcel level) Plot Area Olive Vegetat. Bare soil (ha) trees Cover (%) (%) (%) A 5.23 24.6% 50.1% 25.2 B 4.65 6.7% 61.1% 32.4 C 3.2 40.9% 54.2% 5.6 D 0.65 32.2% 67.4% 0.4 E 4.31 38.0% 47.1% 15.0 IAS- CSIC. Peña-Barragán et al.2005, Agric., Environment &Ecosystems García-Torres, L., et al. 2008. Computers & Electronic in Agriculture, 61, 179-191
  • 12. 3b. Software SARI® to define and assess “micro-plots” SARI CHARACTERISTICS Microplot length and height is arbitrarily defined. Indicators calculated by SARI: Integrated pixel digital values (IDV) Percentage of pixels (%PI) with DV≠0 Classify the microplots in defined classes
  • 13. 3b. Software SARI®, Sectioning & Assessment of Remote Images, Precision Agriculture (2011a & 2011b) To design any agricultural operation at farm/ parcel level (Outcome: input parcel prescription map) (
  • 14. ESRI EUROPEAN USER CONFERENCE, 26-28 October 2011, Madrid Automatic image processing for agriculture through specific ENVI modules (add-on) 3c. Cropping systems classification (CROPCLASS®) (Specific ENVI module, “add-on”) - Multi-temporal classification of crop fields. - User-defined plot size and geometry. - Import/export related only to georeferenced coordinates. - Spatial and digital information retrieval from each plot. - Reports for each plot and the image as a whole.
  • 15. 3c. Software CROPCLASS®: to automatically isolate, classify and analysis each parcel High spatial resolution, multispectral and multi-temporal series of images 1) Plot/ parcel isolation 2) Assessment and export of digital values 3) Analysis and interpretation of “its” agricultural status 4) Export of the information generated
  • 16. ESRI EUROPEAN USER CONFERENCE, 26-28 October 2011, Madrid Automatic image processing for agriculture through specific ENVI modules (add-on ) 3e Automatic image georeferencing/ co-registration AUGEO-2.0® (Specific ENVI module, “add-on”) - Only ATT’s within a defined range are mutually detected. - Different colors work as a filter. - Minimum and maximum distance (Gómez-Candón et al. 2011c. Precision Agriculture, DOI) 16
  • 17. 3e Automatic image georeferencing/ co-registration, Software AUGEO-2.0® STANDARD GEO-REFERENCING AUGEO GEO-REFERENCING • Better accuracy • Hard-edge points are difficult to • Less time-consuming find. • More time-consuming Hard edge points. Artificial Terrestrial Targets
  • 18. ESRI EUROPEAN USER CONFERENCE, 26-28 October 2011, Madrid Automatic image processing for agriculture through specific ENVI modules (add-on) 3f. AMI: Automatic Module Integration (under development) - All previos modules compiled into one add-on. - Execution as a sequence. - Outputs from one module could serve as input data to another. 18
  • 19. ESRI EUROPEAN USER CONFERENCE, 26-28 October 2011, Madrid 4) Software CROPCLASS® + AMI: to automatically isolate, classify and analysis each parcel managing multitemporal images series T=1 T=2 T=N 3f. Automatic modules integration (AMI, under development) 19
  • 20. ESRI EUROPEAN USER CONFERENCE, 26-28 October 2011, Madrid Automatic image processing for agriculture through specific ENVI modules (add-on) 5) Publications, registrations, patents and projects (IAS-CSIC) Projects (Spanish Ministry of Science & Innovation) AGL2007- 60926 (2008-2010) AGL2010- 15506 (2011-2013) Papers -- CLUAS®, Computers & Electronic in Agriculture, 2008 -- AUGEO-2.0®, Precision Agriculture 2011- DOI -- SARI®, Precision Agriculture 2011a (in print) -- SARI®, Precision Agriculture 2011b (in print) Registration CLUAS® (2008) SARI® (2008) AUGEO-2.0® (April 2010) CROPCLASS® (March 2011) Patents: CLUAS PCT/ ES2008/07001· SARI P200801932/ Nº ES 2 332 567
  • 21. Automatic image processing for agriculture through specific ENVI modules (add-on) Final comments COULD BE WISE THAT ENVI INCORPORATE SPECIFIC MODULES FOR AGRICULTURE/ AGRI-ENVIRONMENT? Our add-on are free for research groups upon request THANK YOU FOR YOUR ATTENTION¡