INTRODUCTION
DEFINITION OF BIOINFORMATICS
HISTORY
OBJECTIVES OF BIOINFORMATICS
TOOLS OF BIOINFORMATICS
BIOLOGICAL DATABASES
HOMOLOGY AND SIMILARITY TOOLS (SEQUENCE ALIGNMENT)
PROTEIN FUNCTION ANALYSIS TOOLS
STRUCTURAL ANALYSIS TOOLS
SEQUENCE MANIPULATION TOOLS
SEQUENCE ANALYSIS TOOLS
APPLICATION
CONCLUSION
REFERENCES
Introduction
Definition
History
Principle
Components of bioinformatics
Bioinformatics databases
Tools of bioinformatics
Applications of bioinformatics
Molecular medicine
Microbial genomics
Plant genomics
Animal genomics
Human genomics
Drug and vaccine designing
Proteomics
For studying biomolecular structures
In- silico testing
Conclusion
References
INTRODUCTION
DEFINITION OF BIOINFORMATICS
HISTORY
OBJECTIVES OF BIOINFORMATICS
TOOLS OF BIOINFORMATICS
BIOLOGICAL DATABASES
HOMOLOGY AND SIMILARITY TOOLS (SEQUENCE ALIGNMENT)
PROTEIN FUNCTION ANALYSIS TOOLS
STRUCTURAL ANALYSIS TOOLS
SEQUENCE MANIPULATION TOOLS
SEQUENCE ANALYSIS TOOLS
APPLICATION
CONCLUSION
REFERENCES
Introduction
Definition
History
Principle
Components of bioinformatics
Bioinformatics databases
Tools of bioinformatics
Applications of bioinformatics
Molecular medicine
Microbial genomics
Plant genomics
Animal genomics
Human genomics
Drug and vaccine designing
Proteomics
For studying biomolecular structures
In- silico testing
Conclusion
References
Ecto and endomycorrhizae and their significanceRitaSomPaul
A part of Botany (Hons) syllabus in Mycopathology illustrates the basic differnces in ectomycorrhizae and endomycorrhizae as well as their significance
introduction
What is virus
What is virus resistance plant
History
Gene use for develop virus resistance plant
Coat protein gene
cDNA of satellite RNA
Defective viral genome
Antisense RNA approach and
Ribozyme – mediated protection
conclusion
References
Sequence alig Sequence Alignment Pairwise alignment:-naveed ul mushtaq
Sequence Alignment Pairwise alignment:- Global Alignment and Local AlignmentTwo types of alignment Progressive Programs for multiple sequence alignment BLOSUM Point accepted mutation (PAM)PAM VS BLOSUM
An Introduction to Bioinformatics
Drexel University INFO648-900-200915
A Presentation of Health Informatics Group 5
Cecilia Vernes
Joel Abueg
Kadodjomon Yeo
Sharon McDowell Hall
Terrence Hughes
This ppt have a detailed source about the Biosafety issues in Biotechnology and their implements over by the government. It have a topics about the issues in antibiotic resistance gene , GMO crops etc.
Automated sequencing of genomes require automated gene assignment
Includes detection of open reading frames (ORFs)
Identification of the introns and exons
Gene prediction a very difficult problem in pattern recognition
Coding regions generally do not have conserved sequences
Much progress made with prokaryotic gene prediction
Eukaryotic genes more difficult to predict correctly
Terminator technology refers to plants that have been genetically modified to render sterile seeds at harvest – it is also called Genetic Use Restriction Technology or GURTS
Ecto and endomycorrhizae and their significanceRitaSomPaul
A part of Botany (Hons) syllabus in Mycopathology illustrates the basic differnces in ectomycorrhizae and endomycorrhizae as well as their significance
introduction
What is virus
What is virus resistance plant
History
Gene use for develop virus resistance plant
Coat protein gene
cDNA of satellite RNA
Defective viral genome
Antisense RNA approach and
Ribozyme – mediated protection
conclusion
References
Sequence alig Sequence Alignment Pairwise alignment:-naveed ul mushtaq
Sequence Alignment Pairwise alignment:- Global Alignment and Local AlignmentTwo types of alignment Progressive Programs for multiple sequence alignment BLOSUM Point accepted mutation (PAM)PAM VS BLOSUM
An Introduction to Bioinformatics
Drexel University INFO648-900-200915
A Presentation of Health Informatics Group 5
Cecilia Vernes
Joel Abueg
Kadodjomon Yeo
Sharon McDowell Hall
Terrence Hughes
This ppt have a detailed source about the Biosafety issues in Biotechnology and their implements over by the government. It have a topics about the issues in antibiotic resistance gene , GMO crops etc.
Automated sequencing of genomes require automated gene assignment
Includes detection of open reading frames (ORFs)
Identification of the introns and exons
Gene prediction a very difficult problem in pattern recognition
Coding regions generally do not have conserved sequences
Much progress made with prokaryotic gene prediction
Eukaryotic genes more difficult to predict correctly
Terminator technology refers to plants that have been genetically modified to render sterile seeds at harvest – it is also called Genetic Use Restriction Technology or GURTS
Scott Edmunds talk in the "Policies and Standards for Reproducible Research" session on Revolutionizing Data Dissemination: GigaScience, at the Genomic Standards Consortium meeting at Shenzhen. 6th March 2012
Alexandra Basford, InCoB 2011: A Journal’s Perspective on Data Standards and ...GigaScience, BGI Hong Kong
Alexandra Basford's talk in the curation session at the InCoB meeting in Kuala Lumpar, 30/11/11 on: GigaScience: A Journal’s Perspective on Data Standards and Biocuration
Scott Edmunds talk on GigaScience Big-Data, Data Citation and future data handling at the International Conference of Genomics on the 15th November 2011.
Michel digital nomenclature-gna-zoobank-2014-co-namesconfv2Ellinor Michel
Global Digital Infrastructure for Biological Nomenclature and Taxonomy
Ellinor Michel, Dep’t of Life Sciences, The Natural History Museum, London, UK, (e.michel@nhm.ac.uk)
Richard L. Pyle, Natural Sciences Dep’t, Bishop Museum, Honolulu, HI, USA
Robert P. Guralnick, Dep’t of Ecology & Evolutionary Biology, Univ Colorado, Boulder, CO, USA
Jon Todd, Dep’t of Earth Sciences, The Natural History Museum, London, UK,
The future for interoperable scientific information is digital, yet scientific names, the handles for all biodiversity information, remain without an integrated system tied to published descriptions and museum type specimens. Descriptions and type specimens provide standards for the otherwise fluid concepts of biological taxa. We are working to unify the infrastructures for biological nomenclature across nomenclatural codes (including zoological (ICZN - http://iczn.org/), botanical (ICNafp - http://www.iapt-taxon.org/nomen/main.php) and bacterial (ICNB) codes) through the Global Names Architecture (GNA). Our initial focus is on animal names, as these comprise the largest component of metazoan biodiversity and ZooBank (zoobank.org) is the first code-related online nomenclatural registration system. Users are applied scientists in agriculture, medicine, veterinary science and climate change research; biodiversity researchers such as ecologists, physiologists; archives such as museums; the scientific publishing community – in short, all users of scientific names of organisms based on the work of taxonomists.
European agrobiodioversity, ECPGR network meeting on EURISCO, Central Crop Da...Dag Endresen
Presentation on the Darwin Core standard for data exchange and the germplasm extension for genebanks during the 2014 workshop of the ECPGR Documentation and Information Working Group "Tailoring the Documentation of Plant Genetic Resources in Europe to the Needs of the User" (http://www.ecpgr.cgiar.org/working_groups/documentation_information/docinfo2014.html) in Prague-Ruzyně, Czech Republic, 20th May 2014.
Short URL: https://goo.gl/C5UEnU
DOI: http://doi.org/10.13140/RG.2.2.10865.28006
GBIF registry (GBRDS), at European Nodes meeting in Alicante, Spain (10 March...Dag Endresen
Regional NODES meeting of Europe 2010. Presentation of the Global Biodiversity Resources Discovery System (GBRDS, under development) for the NODES. How do we the NODES want the GBRDS to look like. What do we the NODES wish/need the GBRDS to be.
http://www.gbif.org/
http://gbrds.gbif.org/
http://code.google.com/p/gbif-registry/
Similar to Introduction to Biodiversity Informatics (20)
Updates to Canadensys network activities at the North America Regional Nodes Meeting to the Global Biodiversity Information Facility (GBIF) in the Biodiversity Institute of Ontario at the University of Guelph in Guelph, Ontario.
Delivered to Consortium of Northeastern Herbaria meeting workshop in Montreal, QC on Saturday, June 14, 2014 on use of scientific names in collections.
A Strategic Approach: GenAI in EducationPeter Windle
Artificial Intelligence (AI) technologies such as Generative AI, Image Generators and Large Language Models have had a dramatic impact on teaching, learning and assessment over the past 18 months. The most immediate threat AI posed was to Academic Integrity with Higher Education Institutes (HEIs) focusing their efforts on combating the use of GenAI in assessment. Guidelines were developed for staff and students, policies put in place too. Innovative educators have forged paths in the use of Generative AI for teaching, learning and assessments leading to pockets of transformation springing up across HEIs, often with little or no top-down guidance, support or direction.
This Gasta posits a strategic approach to integrating AI into HEIs to prepare staff, students and the curriculum for an evolving world and workplace. We will highlight the advantages of working with these technologies beyond the realm of teaching, learning and assessment by considering prompt engineering skills, industry impact, curriculum changes, and the need for staff upskilling. In contrast, not engaging strategically with Generative AI poses risks, including falling behind peers, missed opportunities and failing to ensure our graduates remain employable. The rapid evolution of AI technologies necessitates a proactive and strategic approach if we are to remain relevant.
2024.06.01 Introducing a competency framework for languag learning materials ...Sandy Millin
http://sandymillin.wordpress.com/iateflwebinar2024
Published classroom materials form the basis of syllabuses, drive teacher professional development, and have a potentially huge influence on learners, teachers and education systems. All teachers also create their own materials, whether a few sentences on a blackboard, a highly-structured fully-realised online course, or anything in between. Despite this, the knowledge and skills needed to create effective language learning materials are rarely part of teacher training, and are mostly learnt by trial and error.
Knowledge and skills frameworks, generally called competency frameworks, for ELT teachers, trainers and managers have existed for a few years now. However, until I created one for my MA dissertation, there wasn’t one drawing together what we need to know and do to be able to effectively produce language learning materials.
This webinar will introduce you to my framework, highlighting the key competencies I identified from my research. It will also show how anybody involved in language teaching (any language, not just English!), teacher training, managing schools or developing language learning materials can benefit from using the framework.
How to Make a Field invisible in Odoo 17Celine George
It is possible to hide or invisible some fields in odoo. Commonly using “invisible” attribute in the field definition to invisible the fields. This slide will show how to make a field invisible in odoo 17.
Synthetic Fiber Construction in lab .pptxPavel ( NSTU)
Synthetic fiber production is a fascinating and complex field that blends chemistry, engineering, and environmental science. By understanding these aspects, students can gain a comprehensive view of synthetic fiber production, its impact on society and the environment, and the potential for future innovations. Synthetic fibers play a crucial role in modern society, impacting various aspects of daily life, industry, and the environment. ynthetic fibers are integral to modern life, offering a range of benefits from cost-effectiveness and versatility to innovative applications and performance characteristics. While they pose environmental challenges, ongoing research and development aim to create more sustainable and eco-friendly alternatives. Understanding the importance of synthetic fibers helps in appreciating their role in the economy, industry, and daily life, while also emphasizing the need for sustainable practices and innovation.
Operation “Blue Star” is the only event in the history of Independent India where the state went into war with its own people. Even after about 40 years it is not clear if it was culmination of states anger over people of the region, a political game of power or start of dictatorial chapter in the democratic setup.
The people of Punjab felt alienated from main stream due to denial of their just demands during a long democratic struggle since independence. As it happen all over the word, it led to militant struggle with great loss of lives of military, police and civilian personnel. Killing of Indira Gandhi and massacre of innocent Sikhs in Delhi and other India cities was also associated with this movement.
Unit 8 - Information and Communication Technology (Paper I).pdfThiyagu K
This slides describes the basic concepts of ICT, basics of Email, Emerging Technology and Digital Initiatives in Education. This presentations aligns with the UGC Paper I syllabus.
Macroeconomics- Movie Location
This will be used as part of your Personal Professional Portfolio once graded.
Objective:
Prepare a presentation or a paper using research, basic comparative analysis, data organization and application of economic information. You will make an informed assessment of an economic climate outside of the United States to accomplish an entertainment industry objective.
Welcome to TechSoup New Member Orientation and Q&A (May 2024).pdfTechSoup
In this webinar you will learn how your organization can access TechSoup's wide variety of product discount and donation programs. From hardware to software, we'll give you a tour of the tools available to help your nonprofit with productivity, collaboration, financial management, donor tracking, security, and more.
Embracing GenAI - A Strategic ImperativePeter Windle
Artificial Intelligence (AI) technologies such as Generative AI, Image Generators and Large Language Models have had a dramatic impact on teaching, learning and assessment over the past 18 months. The most immediate threat AI posed was to Academic Integrity with Higher Education Institutes (HEIs) focusing their efforts on combating the use of GenAI in assessment. Guidelines were developed for staff and students, policies put in place too. Innovative educators have forged paths in the use of Generative AI for teaching, learning and assessments leading to pockets of transformation springing up across HEIs, often with little or no top-down guidance, support or direction.
This Gasta posits a strategic approach to integrating AI into HEIs to prepare staff, students and the curriculum for an evolving world and workplace. We will highlight the advantages of working with these technologies beyond the realm of teaching, learning and assessment by considering prompt engineering skills, industry impact, curriculum changes, and the need for staff upskilling. In contrast, not engaging strategically with Generative AI poses risks, including falling behind peers, missed opportunities and failing to ensure our graduates remain employable. The rapid evolution of AI technologies necessitates a proactive and strategic approach if we are to remain relevant.
3. What is biodiversity informatics?
How are biodiversity data used?
How are biodiversity data made available?
What are the key challenges?
What are its organizations?
Where can I go for more?
12. Chapman, A. D. 2005. Uses of Primary
Species-Occurrence Data, version 1.0.
Report for the Global Biodiversity
Information Facility, Copenhagen.
13. Uses of Primary Occurrence Data
1 Taxonomy: research, indices, floras/faunas, field guides,
phylogenies
2 Biogeography: distributional atlases, species distribution
modeling, species decline
3 Life Histories and Phenologies
4 Endangered, Migratory, and Invasive Species
5 Impact of Climate Change
6 Ecology, Evolution and Genetics: habitat loss, ecosystem
function
7 Environmental Planning: impact assessments
8 Conservation Planning: rapid biodiversity assessments,
identifying priority areas, reserve selection, sustainable use
14. Uses of Primary Occurrence Data
9 Health and Public Safety: disease and disease
vectors, bioterrorism, biosafety, parasitology
10 Bioprospecting
11 Border Control and Wildlife Trade
12 Education and Public Outreach
13 Ecotourism
14 Society and Politics: data repatriation
15 Recreational activities
71. What is biodiversity informatics?
How are biodiversity data used?
How are biodiversity data made available?
What are the key challenges?
What are its organizations?
Where can I go for more?
72. Thanks!
www.canadensys.net
@canadensys
@dpsSpiders
david.shorthouse@umontreal.ca
David P. Shorthouse
Editor's Notes
it aids in sequencing and annotating genomes and their observed mutations.Aids in development of biological and gene ontologies to organize and query biological dataplays a role in the analysis of gene and protein expression and regulation
computerized handling of any biodiversity informationIt typically builds on a foundation of taxonomic, biogeographic, or ecological information stored in digital form, which, with the application of modern computer techniques, can yield new ways to view and analyse existing information, as well as predictive models for information that does not yet exist
Coined by John Whiting in 1992 to cover the activities of an entity known as the Canadian Biodiversity Informatics Consortium, a group involved with fusing basic biodiversity information with environmental economics and geospatial information in the form of GPS and GIS.I coined the term as part of a title for what was at first a loose affiliation between about five agencies (including myself, a firm specializing in GPS, and GIS firm, a firm specializing in database management, a firm specializing in environmental economics, and a representative of the Canadian Museum of Naturelost any obligate connection with the GPS/GIS world and be associated with the computerized management of any aspects of biodiversity information