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myExperiment - Defining the Social Virtual Research Environment

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David De Roure
David De Roure

Presented at the 4th IEEE International Conference on e-Science, Indianapolis, December 11, 2008

EducationTechnology
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myExperiment – Defining the Social Virtual Research Environment David De Roure, Carole Goble, Jiten Bhagat, Don Cruickshank, Antoon Goderis, Danius Michaelides and David Newman
[object Object],[object Object],[object Object]
scientists Graduate Students Undergraduate Students experimentation Data, Metadata Provenance Workflows Ontologies Digital Libraries The social process of Science 2.0 Local Web Repositories Virtual Learning Environment Technical Reports Reprints Peer-Reviewed Journal & Conference Papers Preprints & Metadata Certified Experimental Results & Analyses
Taverna Trident Kepler Triana BPEL Ptolemy II
[object Object],[object Object],[object Object],[object Object],[object Object],Reuse, Recycling, Repurposing
myExperiment.org is… ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],myExperiment.org is... myExperiment currently has 1331 registered users, 114 groups, 536 workflows, 147 files and 40 packs
 
 
 
 
 
 
 
myExperiment.org is… ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],myExperiment Features Distinctives
Ownership and Attribution The most important aspect of myExperiment Designed by scientists
Packs ,[object Object],[object Object],[object Object]
 
[object Object]
24/5/2007 | myExperiment | Slide
HTML For Developers mySQL Search Engine reviews ratings groups friendships tags Enactor files workflows ` RDF Store SPARQL endpoint Managed REST API facebook iGoogle android XML API config profiles packs credits
For Developers ,[object Object],[object Object],[object Object],[object Object],[object Object]
Google Gadgets Bringing myExperiment to the iGoogle user
Taverna Plugin Bringing myExperiment to the Taverna user
Facebook
Silverlight
Exporting packs
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> PREFIX myexp: <http://rdf.myexperiment.org/ontology#> PREFIX sioc: <http://rdfs.org/sioc/ns#> select ?friend1 ?friend2 ?acceptedat where {?z rdf:type <http://rdf.myexperiment.org/ontology#Friendship> . ?z myexp:has-requester ?x . ?x sioc:name ?friend1 . ?z myexp:has-accepter ?y . ?y sioc:name ?friend2 . ?z myexp:accepted-at ?acceptedat } All accepted Friendships including accepted-at time Semantically-Interlinked Online Communities SPARQL endpoint
 
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Six Principles of Software Design to Empower Scientists ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],De Roure, D. and Goble, C. (2009) Six Principles of Software Design to Empower Scientists. IEEE Software (in press)
[object Object]
e-Laboratory Lifecycle
Workflow Monitoring Event Logging Social Metadata Annotation Service Search User Registration Distributed Data Query Job Execution Naming and Identity Anonymisation Text Mining Research Object Management Assembling e-Laboratories Example Core Services ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Research Objects
Content Capture and Curation Workflows and Services Experts Social by User Community refine validate refine validate Self by Service Providers seed seed refine validate seed Automated refine validate seed Reuse and Symbiosis
[object Object],[object Object],[object Object],[object Object],Defining the Social Virtual Research Environment
Reflections ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
 

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myExperiment - Defining the Social Virtual Research Environment

  • 1. myExperiment – Defining the Social Virtual Research Environment David De Roure, Carole Goble, Jiten Bhagat, Don Cruickshank, Antoon Goderis, Danius Michaelides and David Newman
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  • 3. scientists Graduate Students Undergraduate Students experimentation Data, Metadata Provenance Workflows Ontologies Digital Libraries The social process of Science 2.0 Local Web Repositories Virtual Learning Environment Technical Reports Reprints Peer-Reviewed Journal & Conference Papers Preprints & Metadata Certified Experimental Results & Analyses
  • 4. Taverna Trident Kepler Triana BPEL Ptolemy II
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  • 15. Ownership and Attribution The most important aspect of myExperiment Designed by scientists
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  • 19. 24/5/2007 | myExperiment | Slide
  • 20. HTML For Developers mySQL Search Engine reviews ratings groups friendships tags Enactor files workflows ` RDF Store SPARQL endpoint Managed REST API facebook iGoogle android XML API config profiles packs credits
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  • 22. Google Gadgets Bringing myExperiment to the iGoogle user
  • 23. Taverna Plugin Bringing myExperiment to the Taverna user
  • 27. PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> PREFIX myexp: <http://rdf.myexperiment.org/ontology#> PREFIX sioc: <http://rdfs.org/sioc/ns#> select ?friend1 ?friend2 ?acceptedat where {?z rdf:type <http://rdf.myexperiment.org/ontology#Friendship> . ?z myexp:has-requester ?x . ?x sioc:name ?friend1 . ?z myexp:has-accepter ?y . ?y sioc:name ?friend2 . ?z myexp:accepted-at ?acceptedat } All accepted Friendships including accepted-at time Semantically-Interlinked Online Communities SPARQL endpoint
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  • 34. Content Capture and Curation Workflows and Services Experts Social by User Community refine validate refine validate Self by Service Providers seed seed refine validate seed Automated refine validate seed Reuse and Symbiosis
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