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中科院武汉病毒所 2009 级硕士中期报告




E . c o li K- 12 中 3- 羟基苯丙酸
           转运蛋白研究

          报告人:陈 冰
        指导老师:周宁一研究员

            2011.11.23



                            1/17
Background


         COOH         3-(3-hydroxyphenyl)propionate

                                    (3-HPP)



                      From the degradation of lignin and
                     other aromatic constituents of plants
                OH




                                                             2/17
Background

Pathway for the catabolism of 3-HPP in E.coli K-12




Eduardo Díaz.,et al.2001. Biodegradation of Aromatic Compounds by Escherichia coli .
     Microbiology and Molecular Biology Reviews. p. 523-569, Vol. 65, No. 4
                                                                                 3/17
Background

               Transporter Classification system, TC

                             Transporters

    Class        Electrochemical potential-driven transporters
      2

   Subclass
                 Porters: uniporters, symporters and antiporters
     2.A

   Family
                 The Major Facilitator Superfamily (MFS)
    2.A.1
                                   (Up to date :69)
   Subfamily
   2.A.1.15     The Aromatic Acid:H+ Symporter (AAHS) Family



                                                                   4/17
Background

     The Aromatic Acid:H+ Symporter (AAHS) Family:
         MhpT : 3-Hydroxyphenyl propionate porter
         PcaK : 4-Hydroxybenzoate/protocatachuate porter
         TfdK : 2,4-Dichlorophenoxyacetate porter
         BenK : Benzoate porter
         GenK : gentisate porter
         MhbT : 3-Hydroxybenzoate porter
         VanK : Vanillate porter
         MucK : cis,cis-muconate porter
         NiaP or YceI : The putative niacin/nicotinamide uptake porter
         Orf1 : Probable 1-hydroxy-2-naphthoate transporter
         MmlH : Probable 4-methylmuconolactone transporter
                                                               Up to date:11

                                                                           5/17
Results

 E.coli K-12 W3110 can grow with 3-HPP as sole carbon source


                                              A: MM+MnSO4+E.coli K-12

                                              B: MM+MnSO4+E.coli K-12+glycerol

                                              C: MM+MnSO4+E.coli K-12+3-HPP
                                                 (the final concertration:2mM)

                                              D: MM+MnSO4+E.coli K-12+glucose

                                              E: MM+MnSO4+E.coli K-12+glycerol+3-HPP

                                              F: MM+MnSO4+E.coli K12+glycerol+glucose
The growth experiments of E.coli. K12 W3110




                                                                                   6/17
Results
MhpT is a transmembrane protein by TMHMM topology prediction


  A
          A




               MhpT-GFP is localized in the membrane
                A                              B


                    B



           A: negative control, GFP -BL21   B: W3110-MhpT-GFP-BL21

                                                                     7/17
Results


 Two plasmids involved in the λ Red recombination system


    Knockout of mhpT in Escherichia coli K-12


                λ Red recombination system in
              Escherichia coli gene modification




                                                       8/17
Results              A simple gene disruption strategy




H1 and H2 refer to the homology extensions or regions.P1 and P2 refer to priming sites
Kirill A.,et al.2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR
products.PNAS.6640-6645,vol.97                                                                   9/17
Results

 Verification of mhpT knock-out mutants




W3110 wild type
                               W3110△mhpT::kan




                                        10/17
Results
Growth of Escherichia coli K-12 W3110 and mhpT mutant




              Medium: Mineral medium (pH=7.0)


                                                    11/17
Results
Growth of Escherichia coli K-12 W3110 and mhpT mutant


                                   pH=8.2




            Medium: Na2HPO4/KH2PO4 buffer(pH=8.2)


                                                        12/17
Results

     Construction of vectors to express MhpT

          mhpT




                                               13/17
Results
    The growth curves
  of four different strains

                                            mutant
                              wild type   (mhpT-T31)




                              mutant      mutant(T31)




                                            14/17
Results
Site-directed mutagenesis of MhpT


                                    Glu-27-Ala
                                    Glu-27-Asp
                                    Asp-75-Glu
                                    Ala-272-His
                                    Lys-276-Asp




                                                  15/17
Future work:

•Uptake of the 14C-labelled 3-HPP in the wild type, mutant,
overexpression and complementary strains

2. Activity analyses on MhpA to 3-HPP as initial substract
   in the wild type, mutant, overexpression and complementary strains

3. Detection of mhpT transcription by real-time PCR




                                                                        16/17
Th an k
yo u !


          17/17

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Work report 陈冰11.11.23 修订版

  • 1. 中科院武汉病毒所 2009 级硕士中期报告 E . c o li K- 12 中 3- 羟基苯丙酸 转运蛋白研究 报告人:陈 冰 指导老师:周宁一研究员 2011.11.23 1/17
  • 2. Background COOH 3-(3-hydroxyphenyl)propionate (3-HPP) From the degradation of lignin and other aromatic constituents of plants OH 2/17
  • 3. Background Pathway for the catabolism of 3-HPP in E.coli K-12 Eduardo Díaz.,et al.2001. Biodegradation of Aromatic Compounds by Escherichia coli . Microbiology and Molecular Biology Reviews. p. 523-569, Vol. 65, No. 4 3/17
  • 4. Background Transporter Classification system, TC Transporters Class Electrochemical potential-driven transporters 2 Subclass Porters: uniporters, symporters and antiporters 2.A Family The Major Facilitator Superfamily (MFS) 2.A.1 (Up to date :69) Subfamily 2.A.1.15 The Aromatic Acid:H+ Symporter (AAHS) Family 4/17
  • 5. Background The Aromatic Acid:H+ Symporter (AAHS) Family: MhpT : 3-Hydroxyphenyl propionate porter PcaK : 4-Hydroxybenzoate/protocatachuate porter TfdK : 2,4-Dichlorophenoxyacetate porter BenK : Benzoate porter GenK : gentisate porter MhbT : 3-Hydroxybenzoate porter VanK : Vanillate porter MucK : cis,cis-muconate porter NiaP or YceI : The putative niacin/nicotinamide uptake porter Orf1 : Probable 1-hydroxy-2-naphthoate transporter MmlH : Probable 4-methylmuconolactone transporter Up to date:11 5/17
  • 6. Results E.coli K-12 W3110 can grow with 3-HPP as sole carbon source A: MM+MnSO4+E.coli K-12 B: MM+MnSO4+E.coli K-12+glycerol C: MM+MnSO4+E.coli K-12+3-HPP (the final concertration:2mM) D: MM+MnSO4+E.coli K-12+glucose E: MM+MnSO4+E.coli K-12+glycerol+3-HPP F: MM+MnSO4+E.coli K12+glycerol+glucose The growth experiments of E.coli. K12 W3110 6/17
  • 7. Results MhpT is a transmembrane protein by TMHMM topology prediction A A MhpT-GFP is localized in the membrane A B B A: negative control, GFP -BL21 B: W3110-MhpT-GFP-BL21 7/17
  • 8. Results Two plasmids involved in the λ Red recombination system Knockout of mhpT in Escherichia coli K-12 λ Red recombination system in Escherichia coli gene modification 8/17
  • 9. Results A simple gene disruption strategy H1 and H2 refer to the homology extensions or regions.P1 and P2 refer to priming sites Kirill A.,et al.2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products.PNAS.6640-6645,vol.97 9/17
  • 10. Results Verification of mhpT knock-out mutants W3110 wild type W3110△mhpT::kan 10/17
  • 11. Results Growth of Escherichia coli K-12 W3110 and mhpT mutant Medium: Mineral medium (pH=7.0) 11/17
  • 12. Results Growth of Escherichia coli K-12 W3110 and mhpT mutant pH=8.2 Medium: Na2HPO4/KH2PO4 buffer(pH=8.2) 12/17
  • 13. Results Construction of vectors to express MhpT mhpT 13/17
  • 14. Results The growth curves of four different strains mutant wild type (mhpT-T31) mutant mutant(T31) 14/17
  • 15. Results Site-directed mutagenesis of MhpT Glu-27-Ala Glu-27-Asp Asp-75-Glu Ala-272-His Lys-276-Asp 15/17
  • 16. Future work: •Uptake of the 14C-labelled 3-HPP in the wild type, mutant, overexpression and complementary strains 2. Activity analyses on MhpA to 3-HPP as initial substract in the wild type, mutant, overexpression and complementary strains 3. Detection of mhpT transcription by real-time PCR 16/17
  • 17. Th an k yo u ! 17/17