Virtual pathalogy lab

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This document summarizes a virtual pathology lab project at Cairo University that aims to develop a computer-based system to assist veterinarians in disease diagnosis. The system will use image processing techniques like pre-processing, segmentation, feature extraction and classification to analyze pathology tissue images and determine infected regions. It is intended to reduce the time and effort required for researchers' tasks and help the teaching process. The project scope involves developing a website for digital pathology images and diagnosing diseases. An agile model will be used with phases for planning, design, implementation, testing and maintenance.

Engineering

Cairo University
Faculty of Computers and Information
Virtual Pathology Lab
Diagnosis part
By
• Ibrahim Abd El Hamid Younes
• Mina Sedki
• Ahmed Mahdi Mohamed
• Mohamed El Said Fathi
• Mohamed El Mahdi Ahmed
• Mustafa Samir

Overview
> Animalism fortune and it’s importance.
> The role of technology to take care of animals
> Develop new system to discover disease.

Problem Statement
> The huge diseases that difficult to be discovered.
> Our system will save a lot of time and efforts
 > The main problem face vet’s researchers

Project Objectives
 Computer based
pathology
diagnosis system
 Determining the
infects region that
can harm the body
of the animal.
 Reducing the
amount of time
and efforts of
researchers to
accomplish their
tasks.
 Helping the
teaching process
 Support the vet
doctor in his/her
decision

Sample pathology tissue
image and system stages
Pre-processing
Segmentation
and isolation
region of
interest
Feature extraction
Diagnosis and
classification
Normal Abnormal
May be K-NN, Neural network, SVM, etc.

Project scope (Group II)
The scope of the project are:
- Develop a website for the
digital pathology images
- Diagnosing diseases

Life cycle model
> Agile model and it’s feature
> Planning and feasibility study.
> systems design.
> implementation.
> integration and testing.
> Maintenance.

Conclusion
> Information technology and it’s role in environment.
> the problem that will be solved by project.
> the main objectives that will be achieved by us.
> what is the life cycle of the system.
> methodologies would be available and useful to
accomplish our task.
> current work we are going on.

What's hot

Recent developments in digital pathology enable the rapid scanning of microscope slides at high resolution, making the digitisation of histopathology slides for routine diagnosis purposes feasible. An important initial step in the wider adoption of this technology is the establishment of validation data assessing how effective pathologists are using digital workstations in comparison to conventional light microscopes and glass slides when examining cases for primary diagnosis. I will report on the first study sufficiently powered to demonstrate a statistically valid equivalent (i.e. non-inferior) performance of digital pathology (DP) against standard glass slide (GS) microscopy. This study examined a total of 3,017 cases were included, generating 10,138 slides, which when scanned resulted in a digital archive of 2.45 terabytes. As well as demonstrating non-inferiority of digital in comparison to glass slides the study was useful in establishing rules for slide scanning and identifying areas where digital pathology has limitations and needs to be used with caution. Finally the presentation covers the impact adopting digital pathology will have on diagnostic laboratories, the economics of these changes and where these changes are most likely to benefit patients.

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Virtual pathalogy lab

1. Cairo University Faculty of Computers and Information Virtual Pathology Lab Diagnosis part By • Ibrahim Abd El Hamid Younes • Mina Sedki • Ahmed Mahdi Mohamed • Mohamed El Said Fathi • Mohamed El Mahdi Ahmed • Mustafa Samir

2. Overview > Animalism fortune and it’s importance. > The role of technology to take care of animals > Develop new system to discover disease.

3. Problem Statement > The huge diseases that difficult to be discovered. > Our system will save a lot of time and efforts  > The main problem face vet’s researchers

4. Project Objectives  Computer based pathology diagnosis system  Determining the infects region that can harm the body of the animal.  Reducing the amount of time and efforts of researchers to accomplish their tasks.  Helping the teaching process  Support the vet doctor in his/her decision

5. Sample pathology tissue image and system stages Pre-processing Segmentation and isolation region of interest Feature extraction Diagnosis and classification Normal Abnormal May be K-NN, Neural network, SVM, etc.

6. Project scope (Group II) The scope of the project are: - Develop a website for the digital pathology images - Diagnosing diseases

7. Life cycle model > Agile model and it’s feature > Planning and feasibility study. > systems design. > implementation. > integration and testing. > Maintenance.

8. The life cycle diagnosis system

9. Conclusion > Information technology and it’s role in environment. > the problem that will be solved by project. > the main objectives that will be achieved by us. > what is the life cycle of the system. > methodologies would be available and useful to accomplish our task. > current work we are going on.

Virtual pathalogy lab

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