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COMPUTATIONAL MODELING IN DRUG
DISPOSITION
Mr. Omkar Tipugade
M-pharm , Sem –II ( Pharmaceutics )
Shree Santkrupa College Of Pharmacy ,Ghogaon.
CONTENT:
 Introduction
 Modelling technique
 Quantitative approach
 Qualitative approach
 Drug absorption
 Solubility
 Intestinal permeation
 Drug distribution
 Volume of distribution
 Plasma protein binding
 BBB
 Drug excretion
 Active transporter
INTRODUCTION:
 Historically ,drug discovery has focused almost exclusively on efficacy and
selectivity against the biological target.
 Drug candidates fail at phase II & III clinical trial because of undesirable drug PK
properties including ADME & toxicity.
 To reduce the attrition rate at more expensive later stage , in-vitro evaluation of
ADME properties in the early phase of drug discovery has widely adopted.
 Many high throughput in-vitro ADMET property screening assay have developed
& applied successfully .
 Fueled by ever increasing computational power & significant advance of in silico
modeling algorithms , numerous computational program that aim at modeling
ADMET properties have emerged.
 A comprehensive list of available commercial ADMET modeling software has
been provided till date.
In silico modeling targets of drug disposition.
MODELLING TECHNIQUE
2 Approache
a) Quantitative approach :
 Represented by pharmacophore modeling & flexible docking studies investigate
the strutural requirement for the interaction between drug & target that are
involved in ADMET process.
 These are especially useful when these is an accumulation of knowledge against
certain target E.g., a set of drug known to be transported by transporter would
enable a pharmacophore study to elucidate the minimum required structure
feature for transport.
 3 widely used automated pharmacophore perception tool are DISCO ( Distance
Comparion ) , GASP ( Genetic Algorithm Similarity Program ) & Catalyst.
b) Qualitative approaches :
 Presented by QSAR & QSPR studies utilize multivarible analysis to corelate
molecular description with ADMET related proprties
 It is essential to select the right mathematical tool for most effective ADMET
modeling. Sometime it is necessary to apply multiple stastical method & compare
the result to identify the best approaches.
DRUG ABSORPTION :
 Because of its convenience & good patient compliance oral administration is the
most prefered drug delivery form.
 As a result , much of the attention of in silico approaches is focused on modeling
drug oral absorption which occuar in the human intestine.
 In general , drug bioavailability & drug absorption is the result of the interplay
between drug solubility & intestinal permeability .
a) Solubility :
 A drug generally must dissolve before it can be absorbed from intestinal lumen .
 By measuring a drug log P value ( log of partition coefficient of compound
between water & n octanol ) its MP , the would indirectly solubility using general
solubility equation.
 There are two approaches to model solubility , one is based on the underlying
physiological processes & the other is an empirical approach . The dissolution
process involve the breaking up of solute from its crystal lattice & association of
the solute or solvent molecule.
 To predict the solubility of compound even before synthesizing its , in silico
modeling can be implemented .
 Empirical approaches represented by QSAR , utilize multivariable analysis to
identify correlation between molecular descriptor & solubility.
b) Intestinal permeation :
 Describe the ability of drug to across the intestinal mucosa separating the gut
lumen from the portal circulation .
 It is an essential process for drug to pass the intestinal membrane before entering
the systematic circulation to reach their target site of action
 Process involve both passive & active transport
 Is a complex process that is difficult to predict solely based on molecular
mechanism .
DRUG DISTRIBUTION :
 is an important aspect of drug PK profile .
 The structure & physiochemical properties of drug determine the extent of
distribution which is mainly reflected by three parameter.
1. Volume of distribution :
 Is a measure of relative partitioning of drug between plasma & tissue an imp
proportional constant that when combined drug is a major determination of how
often the drug should administration .
 However , because of the scaricity of in-vivo data model that are capble of
prediction Vd based safety on computed descriptors an still under development .
2. Plasma – protein binding :
 Drug binding to variety of plasma protein such as albumin , as unbound drug
primarily contribute its pharmacological efficacy .
 The effect of PPB is an imp consideration whwn evaluting the effective drug
plasma conc.
 The model proposed to predict PPB should not on the binding data of only one
protein when predicting plasma protein binding because it is a composite
parameter reflecting interaction with multiple protein .
3. BBB:
 Maintain the restricted extracellular environment in the central nerve system.
 The evalution of drug penetration through BBB is an integral part of drug
discovery & development processs.
 Again , because of few experimental data derived from inconsistant protocol ,
most BBB permeation prediction model an are of limited practical use despite
intensive effort
 Most approaches model log blood brain which is a measurement of drug
partitioning between blood & brain tissue
 Measurement is an indirect implication of BBB permeability which does not
discriminate between free & plasma protein bound solute.
DRUG EXCRETION :
 The excretion or clearance of drug is quantified by plasma clearance , which is
defined as plasma volume that has cleared completely free of drug per unit of
time .
 Together with Vd, it can assist in the calculation of drug half-life thus determining
the dosage regimen .
 Hepatic & renal clearance are the two main component of plasma clearance.
 No model has been reported that is capable of predicting plasma clearance
solely from computed drug structure .
 Current modeling effort are mainly focused on estimating in-vivo clearance from
in-vivo data .
 Just like other PK aspect the hepatic & renal clearance process is also
complicate by presence of active transporter.
ACTIVE TRANSPORTER :
 Transporter are an integral part of any ADMET modeling program because of
their presence on barrier membrane & then substantial overlap between their
substrate & many drug.
 Unfortunately because of limited understanding of transporters , must prediction
program do not have a mechanism to incorporate the effect of action transport .
Thank you

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Computational modeling in drug disposition

  • 1. COMPUTATIONAL MODELING IN DRUG DISPOSITION Mr. Omkar Tipugade M-pharm , Sem –II ( Pharmaceutics ) Shree Santkrupa College Of Pharmacy ,Ghogaon.
  • 2. CONTENT:  Introduction  Modelling technique  Quantitative approach  Qualitative approach  Drug absorption  Solubility  Intestinal permeation  Drug distribution  Volume of distribution  Plasma protein binding  BBB  Drug excretion  Active transporter
  • 3. INTRODUCTION:  Historically ,drug discovery has focused almost exclusively on efficacy and selectivity against the biological target.  Drug candidates fail at phase II & III clinical trial because of undesirable drug PK properties including ADME & toxicity.  To reduce the attrition rate at more expensive later stage , in-vitro evaluation of ADME properties in the early phase of drug discovery has widely adopted.  Many high throughput in-vitro ADMET property screening assay have developed & applied successfully .  Fueled by ever increasing computational power & significant advance of in silico modeling algorithms , numerous computational program that aim at modeling ADMET properties have emerged.  A comprehensive list of available commercial ADMET modeling software has been provided till date.
  • 4. In silico modeling targets of drug disposition.
  • 5. MODELLING TECHNIQUE 2 Approache a) Quantitative approach :  Represented by pharmacophore modeling & flexible docking studies investigate the strutural requirement for the interaction between drug & target that are involved in ADMET process.  These are especially useful when these is an accumulation of knowledge against certain target E.g., a set of drug known to be transported by transporter would enable a pharmacophore study to elucidate the minimum required structure feature for transport.  3 widely used automated pharmacophore perception tool are DISCO ( Distance Comparion ) , GASP ( Genetic Algorithm Similarity Program ) & Catalyst. b) Qualitative approaches :  Presented by QSAR & QSPR studies utilize multivarible analysis to corelate molecular description with ADMET related proprties  It is essential to select the right mathematical tool for most effective ADMET modeling. Sometime it is necessary to apply multiple stastical method & compare the result to identify the best approaches.
  • 6. DRUG ABSORPTION :  Because of its convenience & good patient compliance oral administration is the most prefered drug delivery form.  As a result , much of the attention of in silico approaches is focused on modeling drug oral absorption which occuar in the human intestine.  In general , drug bioavailability & drug absorption is the result of the interplay between drug solubility & intestinal permeability . a) Solubility :  A drug generally must dissolve before it can be absorbed from intestinal lumen .  By measuring a drug log P value ( log of partition coefficient of compound between water & n octanol ) its MP , the would indirectly solubility using general solubility equation.
  • 7.  There are two approaches to model solubility , one is based on the underlying physiological processes & the other is an empirical approach . The dissolution process involve the breaking up of solute from its crystal lattice & association of the solute or solvent molecule.  To predict the solubility of compound even before synthesizing its , in silico modeling can be implemented .  Empirical approaches represented by QSAR , utilize multivariable analysis to identify correlation between molecular descriptor & solubility. b) Intestinal permeation :  Describe the ability of drug to across the intestinal mucosa separating the gut lumen from the portal circulation .  It is an essential process for drug to pass the intestinal membrane before entering the systematic circulation to reach their target site of action  Process involve both passive & active transport  Is a complex process that is difficult to predict solely based on molecular mechanism .
  • 8. DRUG DISTRIBUTION :  is an important aspect of drug PK profile .  The structure & physiochemical properties of drug determine the extent of distribution which is mainly reflected by three parameter. 1. Volume of distribution :  Is a measure of relative partitioning of drug between plasma & tissue an imp proportional constant that when combined drug is a major determination of how often the drug should administration .  However , because of the scaricity of in-vivo data model that are capble of prediction Vd based safety on computed descriptors an still under development . 2. Plasma – protein binding :  Drug binding to variety of plasma protein such as albumin , as unbound drug primarily contribute its pharmacological efficacy .  The effect of PPB is an imp consideration whwn evaluting the effective drug plasma conc.
  • 9.  The model proposed to predict PPB should not on the binding data of only one protein when predicting plasma protein binding because it is a composite parameter reflecting interaction with multiple protein . 3. BBB:  Maintain the restricted extracellular environment in the central nerve system.  The evalution of drug penetration through BBB is an integral part of drug discovery & development processs.  Again , because of few experimental data derived from inconsistant protocol , most BBB permeation prediction model an are of limited practical use despite intensive effort  Most approaches model log blood brain which is a measurement of drug partitioning between blood & brain tissue  Measurement is an indirect implication of BBB permeability which does not discriminate between free & plasma protein bound solute.
  • 10. DRUG EXCRETION :  The excretion or clearance of drug is quantified by plasma clearance , which is defined as plasma volume that has cleared completely free of drug per unit of time .  Together with Vd, it can assist in the calculation of drug half-life thus determining the dosage regimen .  Hepatic & renal clearance are the two main component of plasma clearance.  No model has been reported that is capable of predicting plasma clearance solely from computed drug structure .  Current modeling effort are mainly focused on estimating in-vivo clearance from in-vivo data .  Just like other PK aspect the hepatic & renal clearance process is also complicate by presence of active transporter.
  • 11. ACTIVE TRANSPORTER :  Transporter are an integral part of any ADMET modeling program because of their presence on barrier membrane & then substantial overlap between their substrate & many drug.  Unfortunately because of limited understanding of transporters , must prediction program do not have a mechanism to incorporate the effect of action transport .