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BERGEY’S MANUAL OF SYSTEMATIC
BACTERIOLOGY 2ND EDITION
Presented by,
Irfan M
HISTORY
• DAVID HENRICKS BERGEY (1860-1937).
• IN 1923 BERGEY’S MANUAL OF DETERMINATIVE BACTERIOLOGY
INITIATED.
• IN 1936 BERGEY’S MANUAL TRUST.
• IN 1984 1ST EDITION OF BERGEY’S MANUAL OF SYSTEMATIC
BACTERIOLOGY.
• IN 2011 2ND EDITION OF BERGEY’S MANUAL OF SYSTEMATIC
BACTERIOLOGY.
WHAT IS BMSB ?
IT PROVIDES PHYLOGENETIC INFORMATION ON BACTERIA AND ARCHAEA BASED ON
RRNA SEQUENCING.
THE VOLUMES ARE ORGANIZED ACCORDING TO MOLECULAR CLASSIFICATION
SYSTEMS INCLUDING 16S RRNA SEQUENCES RATHER THAN BY PHENOTYPIC
CHARACTERISTICS.
HOW BMSB IS ARRANGED ?
Divisions Example
Edition 1st and 2nd
Volumes
1, 2, 3, 4, 5 [1st edition have 4 volumes; 2nd edition have 5
volumes]
Parts
Volume 2 have 3 parts (2A, 2B and 2C)
Volume 5 have 2 parts (5A and 5B)
Others have no parts.
Chapters Volume 2A contain 24 chapters
Vol1-(2001) TheArchaeaand the deeply branching
andphototrophic Bacteria
Vol 2-(2005) The Proteobacteria
Vol 3-(2009) The Firmicutes
Vol 4-(2011) The Bacteroidetes, Spirochaetes,
Tenericutes, Mollicutes), Acidobacteria, Fibrobacteres,
Dictyoglomi, Gemmatimonadetes, Fusobacteria,
Lentisphaerae, Chlamydiae,and Planctomycetes
Vol 5-(2012) The Actinobacteria
Second Edition - published in 5 volumes
VOLUME I
Phylum Crenarchaeota
Class: Thermoprotei
• Originally containing thermophilic and hyperthermophilic
sulfur-metabolizing archaea
• Thermoproteales, Desulfurococclaes, Sulfolobales
• Recently discovered Crenarchaeota are inhibited by sulfur &
grow at lower temperatures
• Eg. Sulfolobus
Domain: Archaea
Domain: Archaea
Phylum Euryarchaeota
Differ in rRNA from other archaeans
Eight classes and twelve orders
Methanogenic archaea - Methanococcus
Halophilic archaea -Halobacterium
Thermophilic - Thermococcus
Sulfur-reducing archaea - Archaeoglobus
Domain: Bacteria
The 2nd edition of Bergey’s Manual of Systematic
Bacteriology divides domain Bacteria into 23 phyla. Some
notable phyla are:
1. Phylum Aquificae
The earliest branch of the Bacteria
Contains genera Aquiflex and Hydrogenobacter that can
obtain energy from hydrogen via chemolithotrophic
pathways
Also thermophilic
Ether-linked lipids
2. Phylum Thermotogae
Anaerobic, thermophilic, fermentative, gram-negative
Contains unusual fatty acids and ether linked lipids
Also thermophilic
E.g. Thermotoga
3. Phylum Deinococcus-Thermus
Radiation resistant
Stains Gram-positive
High carotenoid contents
4. Phylum Chloroflexi
Gram negative green nonsulfur bacteria
Gliding motility
Anoxygenic photosynthesis
Unusual peptidoglycans and lack LPS
Chloroflexus,
Herpetosiphon (Nonphotosynthetic)
5. Phylum Cyanobacteria
Oxygenic photosynthetic bacteria
Chlorophyll a and phycobilins
Unicellular or filamentous
Some are Nitrogen fixers
Nostoc, Spirulina
6. Phylum Chlorobi
The “green sulfur bacteria”
Anoxygenic photosynthesis
Includes genus Chlorobium
*Exclusive for Gram-negative bacteria
1. Phylum Proteobacteria
The largest group of gram-negative bacteria
Extremely complex group, with over 538 genera and
2000 species
All major nutritional types are represented: phototrophy,
heterotrophy, and several types of chemolithotrophy
Many species are important in medicine, industry and
biological research
Five classes – (i) Alphaproteobacteria,
(ii) Betaproteobacteria,
(iii)Gammaproteobacteria,
(iv)Deltaproteobacteria,
(v)Epsilonproteobacteria
VOLUME II
o Metabolic resemblance with alphaproteobacteria
o Use Organically decomposed materials in anoxic zones
o Hydrogen (Alcaligenes)
o Ammonia (Nitrosomonas)
o Methane (Methylobacillus)
o Volatile fatty acids (Burkholderia)
o Pathogen -Neisseria
Alphaproteobacteria
o Largest class contains14 orders and 28 families
o Many facultative anaerobes
o Enterobacteriaceae, Vibrionaceae andPasteurellaceae
Use EMP and HMPpathways
o The family Enterobacteriaceae, the “gram-negative enteric
bacteria,” include genera Escherichia, Proteus, Enterobacter,
Klebsiella, Salmonella, Shigella, Serratia, and others
Betaproteobacteria
o The family Pseudomonadaceae, which includes genus
Pseudomonas and related genera
o Pseudomonadaceae, Azotobacteraceae use ED and HMP
pathways
o Few are photosynthetic – Chromatium
o Methylotrophic - Methylococcus
Gammaproteobacteria
o Eight orders and 20 families
oPredators - Bdellovibrio
oMyxococcales (Slime
bacteria) - Myxococcus,
Polyangium
oAnaerobic sulfate reducers -
Desulfovibrio
o Only one order –
Campylobacterales
o Campylobacter,
Helicobacter
o Many are microaerophilic
Deltaproteobacteria Epsilonproteobacteria
VOLUME III
Phylum Firmicutes
“Low G + C gram-positive” bacteria (less than 50%)
Divided into 3 classes
Class I – Clostridia
o Includes genera Clostridium and Desulfotomaculum and others
o Anaerobic
o Forms endospores
Class II – Mollicutes
o Called as mycoplasmas
o Lack cell wall
o Cell membrane –sterols are present
o Pleomorphic
o Require sterols for growth
o Normally non motile, but some exhibit gliding movement
o Most are Animal and plant pathogens
o E.g. Mycoplasma, Spiroplasma
Class III – Bacilli
o Gram positive
o Can be rods or cocci
o Mostly aerobic, some are facultative
o Two orders – Bacillales, Lactobacillales
o Medically and Industrially important genera
o Require sterols for growth
o E.g. Bacillus, Lactobacillus, Streptococcus,
Staphylococcus, Lactococcus, Enterococcus
VOLUME IV
1. Phylum Planctomycetes
o Aquatic habitats
o Coccoid, ovoid or pear shaped
o Some have membrane-enclosed nucleoid
o Most of them lack peptidoglycan
o Unicellular as well as chains
o Division by budding
o Stalks - non-prosthecate appendages
o Flagellar or giding motility
o E.g. Isophaera
2. Phylum – Chlamydiae
Obligate intracellular parasites
Coccoid
Very small in size
Two stages in life cycle – elementary bodies and bodies
Most of them lack peptidoglycan
3. Phylum – Spirochaetes
Characterized by flexible, helical cells with a modified
outer membrane (the outer sheath) and modified flagella
(axial filaments) located within the outer sheath
Gram negative
Chemoheterotrophs
Free living, symbiotic or parasitic
Important pathogenic genera include Treponema, Borrelia,
and Leptospira
4. Phylum – Bacteroidetes
Gram negative, non spore forming anaerobic, rods
Wide distribution – soil, sea, guts and skin of animals
Fecal Indicator
Beneficial microbe in the gut
Some are opportunistic pathogens
Are resistant to wide range of antibiotics
Includes genera Bacteroides, Flavobacterium, Flexibacter, and
Cytophaga; Flexibacter and Cytophaga are motile by means
of “gliding motility”
VOLUME V
1. Phylum – Actinobacteria
“High G + C gram-positive” bacteria (50-55%)
Terrestrial or aquatic
Only one class, but 5 subclasses, six orders and 44
families
Often form complex branching filaments called hyphae
Even complex life cycles are found in some genera
Forms asexual spores
2.Phylum – Actinobacteria
Secondary metabolite producers
Geosmin production
Varied difference in their cell walls, e.g. mycolic acid
Largest genus Streptomyces – 150 species
Includes genera Corynebacterium, Propionibacterium,
Actinomyces, Micrococcus,
Streptomyces, Mycobacterium

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Bergey's manual systematic bacteriology IInd edition

  • 1. BERGEY’S MANUAL OF SYSTEMATIC BACTERIOLOGY 2ND EDITION Presented by, Irfan M
  • 2. HISTORY • DAVID HENRICKS BERGEY (1860-1937). • IN 1923 BERGEY’S MANUAL OF DETERMINATIVE BACTERIOLOGY INITIATED. • IN 1936 BERGEY’S MANUAL TRUST. • IN 1984 1ST EDITION OF BERGEY’S MANUAL OF SYSTEMATIC BACTERIOLOGY. • IN 2011 2ND EDITION OF BERGEY’S MANUAL OF SYSTEMATIC BACTERIOLOGY.
  • 3. WHAT IS BMSB ? IT PROVIDES PHYLOGENETIC INFORMATION ON BACTERIA AND ARCHAEA BASED ON RRNA SEQUENCING. THE VOLUMES ARE ORGANIZED ACCORDING TO MOLECULAR CLASSIFICATION SYSTEMS INCLUDING 16S RRNA SEQUENCES RATHER THAN BY PHENOTYPIC CHARACTERISTICS.
  • 4. HOW BMSB IS ARRANGED ? Divisions Example Edition 1st and 2nd Volumes 1, 2, 3, 4, 5 [1st edition have 4 volumes; 2nd edition have 5 volumes] Parts Volume 2 have 3 parts (2A, 2B and 2C) Volume 5 have 2 parts (5A and 5B) Others have no parts. Chapters Volume 2A contain 24 chapters
  • 5. Vol1-(2001) TheArchaeaand the deeply branching andphototrophic Bacteria Vol 2-(2005) The Proteobacteria Vol 3-(2009) The Firmicutes Vol 4-(2011) The Bacteroidetes, Spirochaetes, Tenericutes, Mollicutes), Acidobacteria, Fibrobacteres, Dictyoglomi, Gemmatimonadetes, Fusobacteria, Lentisphaerae, Chlamydiae,and Planctomycetes Vol 5-(2012) The Actinobacteria Second Edition - published in 5 volumes
  • 6. VOLUME I Phylum Crenarchaeota Class: Thermoprotei • Originally containing thermophilic and hyperthermophilic sulfur-metabolizing archaea • Thermoproteales, Desulfurococclaes, Sulfolobales • Recently discovered Crenarchaeota are inhibited by sulfur & grow at lower temperatures • Eg. Sulfolobus Domain: Archaea
  • 7. Domain: Archaea Phylum Euryarchaeota Differ in rRNA from other archaeans Eight classes and twelve orders Methanogenic archaea - Methanococcus Halophilic archaea -Halobacterium Thermophilic - Thermococcus Sulfur-reducing archaea - Archaeoglobus
  • 8. Domain: Bacteria The 2nd edition of Bergey’s Manual of Systematic Bacteriology divides domain Bacteria into 23 phyla. Some notable phyla are: 1. Phylum Aquificae The earliest branch of the Bacteria Contains genera Aquiflex and Hydrogenobacter that can obtain energy from hydrogen via chemolithotrophic pathways Also thermophilic Ether-linked lipids
  • 9. 2. Phylum Thermotogae Anaerobic, thermophilic, fermentative, gram-negative Contains unusual fatty acids and ether linked lipids Also thermophilic E.g. Thermotoga 3. Phylum Deinococcus-Thermus Radiation resistant Stains Gram-positive High carotenoid contents 4. Phylum Chloroflexi Gram negative green nonsulfur bacteria Gliding motility Anoxygenic photosynthesis Unusual peptidoglycans and lack LPS Chloroflexus, Herpetosiphon (Nonphotosynthetic)
  • 10. 5. Phylum Cyanobacteria Oxygenic photosynthetic bacteria Chlorophyll a and phycobilins Unicellular or filamentous Some are Nitrogen fixers Nostoc, Spirulina 6. Phylum Chlorobi The “green sulfur bacteria” Anoxygenic photosynthesis Includes genus Chlorobium
  • 11. *Exclusive for Gram-negative bacteria 1. Phylum Proteobacteria The largest group of gram-negative bacteria Extremely complex group, with over 538 genera and 2000 species All major nutritional types are represented: phototrophy, heterotrophy, and several types of chemolithotrophy Many species are important in medicine, industry and biological research Five classes – (i) Alphaproteobacteria, (ii) Betaproteobacteria, (iii)Gammaproteobacteria, (iv)Deltaproteobacteria, (v)Epsilonproteobacteria VOLUME II
  • 12. o Metabolic resemblance with alphaproteobacteria o Use Organically decomposed materials in anoxic zones o Hydrogen (Alcaligenes) o Ammonia (Nitrosomonas) o Methane (Methylobacillus) o Volatile fatty acids (Burkholderia) o Pathogen -Neisseria Alphaproteobacteria o Largest class contains14 orders and 28 families o Many facultative anaerobes o Enterobacteriaceae, Vibrionaceae andPasteurellaceae Use EMP and HMPpathways o The family Enterobacteriaceae, the “gram-negative enteric bacteria,” include genera Escherichia, Proteus, Enterobacter, Klebsiella, Salmonella, Shigella, Serratia, and others Betaproteobacteria
  • 13. o The family Pseudomonadaceae, which includes genus Pseudomonas and related genera o Pseudomonadaceae, Azotobacteraceae use ED and HMP pathways o Few are photosynthetic – Chromatium o Methylotrophic - Methylococcus Gammaproteobacteria o Eight orders and 20 families oPredators - Bdellovibrio oMyxococcales (Slime bacteria) - Myxococcus, Polyangium oAnaerobic sulfate reducers - Desulfovibrio o Only one order – Campylobacterales o Campylobacter, Helicobacter o Many are microaerophilic Deltaproteobacteria Epsilonproteobacteria
  • 14. VOLUME III Phylum Firmicutes “Low G + C gram-positive” bacteria (less than 50%) Divided into 3 classes Class I – Clostridia o Includes genera Clostridium and Desulfotomaculum and others o Anaerobic o Forms endospores
  • 15. Class II – Mollicutes o Called as mycoplasmas o Lack cell wall o Cell membrane –sterols are present o Pleomorphic o Require sterols for growth o Normally non motile, but some exhibit gliding movement o Most are Animal and plant pathogens o E.g. Mycoplasma, Spiroplasma
  • 16. Class III – Bacilli o Gram positive o Can be rods or cocci o Mostly aerobic, some are facultative o Two orders – Bacillales, Lactobacillales o Medically and Industrially important genera o Require sterols for growth o E.g. Bacillus, Lactobacillus, Streptococcus, Staphylococcus, Lactococcus, Enterococcus
  • 17. VOLUME IV 1. Phylum Planctomycetes o Aquatic habitats o Coccoid, ovoid or pear shaped o Some have membrane-enclosed nucleoid o Most of them lack peptidoglycan o Unicellular as well as chains o Division by budding o Stalks - non-prosthecate appendages o Flagellar or giding motility o E.g. Isophaera
  • 18. 2. Phylum – Chlamydiae Obligate intracellular parasites Coccoid Very small in size Two stages in life cycle – elementary bodies and bodies Most of them lack peptidoglycan
  • 19. 3. Phylum – Spirochaetes Characterized by flexible, helical cells with a modified outer membrane (the outer sheath) and modified flagella (axial filaments) located within the outer sheath Gram negative Chemoheterotrophs Free living, symbiotic or parasitic Important pathogenic genera include Treponema, Borrelia, and Leptospira
  • 20. 4. Phylum – Bacteroidetes Gram negative, non spore forming anaerobic, rods Wide distribution – soil, sea, guts and skin of animals Fecal Indicator Beneficial microbe in the gut Some are opportunistic pathogens Are resistant to wide range of antibiotics Includes genera Bacteroides, Flavobacterium, Flexibacter, and Cytophaga; Flexibacter and Cytophaga are motile by means of “gliding motility”
  • 21. VOLUME V 1. Phylum – Actinobacteria “High G + C gram-positive” bacteria (50-55%) Terrestrial or aquatic Only one class, but 5 subclasses, six orders and 44 families Often form complex branching filaments called hyphae Even complex life cycles are found in some genera Forms asexual spores
  • 22. 2.Phylum – Actinobacteria Secondary metabolite producers Geosmin production Varied difference in their cell walls, e.g. mycolic acid Largest genus Streptomyces – 150 species Includes genera Corynebacterium, Propionibacterium, Actinomyces, Micrococcus, Streptomyces, Mycobacterium