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BIOMOLECULES
(molecules of life )
Its me dipak aryal
What molecules keep us alive, and
how do they do so?
• All living organisms require several
compounds to continue to live.
• We call these compounds biomolecules. All of
these biomolecules are organic, which means
that they contain carbon.
– Carbon has four valence electrons, which means
this element forms strong covalent bonds with
many other elements.
Biomolecules
• Also, our biomolecules
are formed by joining
many small units together
to form a long chain.
• This process is called
synthesis. Often, a water
molecule is removed in
the process.
– When this happens, we call
it dehydration synthesis.
Biomolecules
• All of our biomolecules are classified into four
groups:
– Carbohydrates
– Lipids
– Proteins
– Nucleic Acids
• Each of these classes have different structures
and functions.
Carbohydrates
• Carbohydrates (carbs)
are biomolecules used
for energy and
structural support.
• Breaking carbs down
provides us with energy.
Carbohydrates
• Carbohydrates are
made up of carbon,
hydrogen and oxygen.
• The ratio of these
elements is roughly
1carbon: 2 hydrogen :1
oxygen.
• On the basis of
hydrolysis
• Monomer:
Monosaccharide
• Dimer: Disaccharide
• Polymer:
Polysaccharide
 Monosaccharides - simple sugars with multiple OH
groups. Based on number of carbons (3, 4, 5, 6), a
monosaccharide is a triose, tetrose, pentose or
hexose.
 Oligosaccharides – 2 to 10 monosaccharides
covalently linked.
 Polysaccharides - polymers consisting of chains of
monosaccharide or disaccharide units.
I
(CH2O)n or H - C - OH
I
Carbohydrates (glycans) have the following
basic composition:
They are the simplest carbohydrates
that cannot be broken into smaller
units on hydrolysis.
• Aldoses (e.g.,
glucose) have an
aldehyde group at
one end
• Ketoses (e.g.,
fructose) have a
keto group, usually
at C2.
C
C OHH
C HHO
C OHH
C OHH
CH2OH
D-glucose
OH
C HHO
C OHH
C OHH
CH2OH
CH2OH
C O
D-fructose
Monosaccharides:
cabohydrates
Oligosaccharides
• The carbohydrates which
can give two to ten
monosaccharides on
hydrolysis.so they can be
disaccharides like
sucrose,maltose,lactose etc
polysaccharides
• The carbohydrates which
can yeild more than ten
monosaccharide units on
hydrolysis.eg : starch
cellulose,glycogen etc
Oilgosaccharides
Structure of glucose(video)
Protein
• Proteins serve many
vital functions in our
body:
– Structural support
– Speeding up chemical
reactions
– Transport of molecules
– …and many more!
Protein(video)
Protein
• All proteins contain
carbon, hydrogen,
oxygen and nitrogen.
• In addition, sulfur may
be present as well.
• Monomer: Amino acid
• Polymer: Protein or
polypeptide
– A peptide is a chain of
amino acids, so a
polypeptide is several
chains put together.
Amino acids
• amino group, carboxyl group, hydrogen and a
variable side group (residue) each joined to a
central carbon atom
H2N-C-COOH
R
H
Protein
• Amino acids are bound
together through
dehydration synthesis.
– The C-group of one
amino acid binds to the
N-group of another.
– We call these bonds
peptide bonds.
Protein
• Proteins have four phases of production:
– Primary: Amino acids are bound together.
– Secondary: Individual amino acids are bent and
molded as needed.
– Tertiary: The entire chain of amino acids is bent
and molded as needed, forming a sub-unit.
– Quaternary: Multiple completed sub-units are
fitted together to make a complete protein.
Types of protein
• On the basis of molecular structure
• Fibrous proteins
• Involved in structure: tendons ligaments blood
clots
(e.g. collagen and spiders silk)
• Contractile proteins in movement: muscle,
microtubules
(cytoskelton, mitotic spindle, cilia, flagella).
• Globular proteins
• most proteins which move around
(e.g. albumen, casein in milk)
• Proteins with binding sites:
enzymes, hemoglobin, immunoglobulins,
membrane receptor sites.
Proteins classified by function
THE NUCLEIC ACIDS
Two types of nucleic acid are found
• Deoxyribonucleic acid (DNA)
• Ribonucleic acid (RNA)
The distribution of nucleic acids in the
eukaryotic cell
• DNA is found in the nucleus
with small amounts in mitochondria and
chloroplasts
• RNA is found throughout the cell
DNA as genetic material: The
circumstantial evidence
1. Present in all cells and virtually restricted to the
nucleus
2. The amount of DNA in somatic cells (body cells) of
any given species is constant (like the number of
chromosomes)
3. The DNA content of gametes (sex cells) is half that of
somatic cells.
In cases of polyploidy (multiple sets of
chromosomes) the DNA content increases by a
proportional factor
4. The mutagenic effect of UV light peaks at 253.7nm.
The peak for the absorption of UV light by DNA
NUCLEIC ACID STRUCTURE
• Nucleic acids are polynucleotides
• Their building blocks are nucleotides
NUCLEOTIDE STRUCTURE
PHOSPHATE SUGAR
Ribose or
Deoxyribose
NUCLEOTIDE
BASE
PURINES PYRIMIDINES
Adenine (A)
Guanine(G)
Cytocine (C)
Thymine (T)
Uracil (U)
Ribose is a pentose
C1
C5
C4
C3 C2
O
RIBOSE DEOXYRIBOSE
CH2OH
H
OH
C
C
OH OH
C
O
H HH
C
CH2OH
H
OH
C
C
OH H
C
O
H HH
C
Spot the difference
THE SUGAR-PHOSPHATE
BACKBONE
• The nucleotides are all
orientated in the same
direction
• The phosphate group joins the
3rd Carbon of one sugar to the
5th Carbon of the next in line.
P
P
P
P
P
P
ADDING IN THE BASES
• The bases are attached to the
1st Carbon
• Their order is important
It determines the genetic
information of the molecule
P
P
P
P
P
P
G
C
C
A
T
T
DNA IS MADE OF TWO
STRANDS OF
POLYNUCLEOTIDE
P
P
P
P
P
P
C
G
G
T
A
A
P
P
P
P
P
P
G
C
C
A
T
T
Hydrogen bonds
DNA IS MADE OF TWO STRANDS OF
POLYNUCLEOTIDE
• The sister strands of the DNA molecule run in opposite
directions (antiparallel)
• They are joined by the bases
• Each base is paired with a specific partner:
A is always paired with T
G is always paired with C
Purine with Pyrimidine
• Thus the sister strands are complementary but not
identical
• The bases are joined by hydrogen bonds, individually
weak but collectively strong.
Function of nucleic acid
Classification of lipids
Fatty acids
•They are basic building blocks of lipids(simplest lipids).
•Fatty acids are carboxylic acids.
Classification of fatty acids
Fatty
acids
saturated
unsaturat
ed
monounsaturated polyunsaturated
FATTY ACIDS
Saturation
 Saturated fatty acid – carbon chains
filled with hydrogen atoms (no C=C
double bonds)
1. Saturated fat – triglyceride
containing 3 saturated fatty
acids, such as animal fats
(butter, lard) & tropical oils
(palm, coconut)
2. Appear solid at room temperature
FATTY ACIDS
 Unsaturated fatty acid – carbon chains lack some
hydrogens (>1 C=C double bond)
1. Monounsaturated fat – triglyceride
containing fatty acids with 1 double
bond; i.e. canola & olive oil
2. Polyunsaturated fat- triglycerides
containing a high % of fatty acids with
>2 double bonds; i.e. corn, safflower,
soybean, sunflower oils and fish; 3.
Appear liquid at room temperature
Saturated fatty acid
• Length of carbon chain
Copyright 2005 Wadsworth Group, a division of Thomson Learning
Stearic acid – 18-carbon, saturated
Simplified structure
Oleic acid – 18-carbon, monounsaturated
Linoleic acid – 18-carbon, polyunsaturated
Fatty Acids
are
amphipathic
molecules.
Why?
Because they have
both polar(hydrophilic)
and non-
polar(hydrophobic)
portions in their
structure
TYPES OF LIPIDS
1. Triglycerides
2. Phospholipids
3. Sterols
TRIGLYCERIDES
• Triglycerides – Fats & Oils
1. Predominate form of fat in foods
and major storage form of fat in
the body
2. Structure – composed of 3 fatty
acids + glycerol
PHOSPHOLIPIDS
• Phospholipids – similar to
triglycerides in structure except
only 2 fatty acids + choline
Phospholipids in foods: Lecithin,
egg yolks, soybeans, wheat
germ, peanuts
Lecithin
Copyright 2005 Wadsworth Group, a division of Thomson Learning
Phospholipids
Sterols
Structure
consists of
carbon rings
STEROLS
 Important part of:
1. Sex hormones – testosterone
2. Vitamin D
3. Bile (aids fat digestion)
4. Adrenal hormones - cortisol
5. Cholesterol – in foods and
made by the liver; dietary
sources include egg yolks,
liver, meats, dairy products
Biomolecules

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Biomolecules

  • 2. Its me dipak aryal
  • 3. What molecules keep us alive, and how do they do so? • All living organisms require several compounds to continue to live. • We call these compounds biomolecules. All of these biomolecules are organic, which means that they contain carbon. – Carbon has four valence electrons, which means this element forms strong covalent bonds with many other elements.
  • 4. Biomolecules • Also, our biomolecules are formed by joining many small units together to form a long chain. • This process is called synthesis. Often, a water molecule is removed in the process. – When this happens, we call it dehydration synthesis.
  • 5. Biomolecules • All of our biomolecules are classified into four groups: – Carbohydrates – Lipids – Proteins – Nucleic Acids • Each of these classes have different structures and functions.
  • 6. Carbohydrates • Carbohydrates (carbs) are biomolecules used for energy and structural support. • Breaking carbs down provides us with energy.
  • 7. Carbohydrates • Carbohydrates are made up of carbon, hydrogen and oxygen. • The ratio of these elements is roughly 1carbon: 2 hydrogen :1 oxygen. • On the basis of hydrolysis • Monomer: Monosaccharide • Dimer: Disaccharide • Polymer: Polysaccharide
  • 8.  Monosaccharides - simple sugars with multiple OH groups. Based on number of carbons (3, 4, 5, 6), a monosaccharide is a triose, tetrose, pentose or hexose.  Oligosaccharides – 2 to 10 monosaccharides covalently linked.  Polysaccharides - polymers consisting of chains of monosaccharide or disaccharide units. I (CH2O)n or H - C - OH I Carbohydrates (glycans) have the following basic composition:
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  • 10. They are the simplest carbohydrates that cannot be broken into smaller units on hydrolysis. • Aldoses (e.g., glucose) have an aldehyde group at one end • Ketoses (e.g., fructose) have a keto group, usually at C2. C C OHH C HHO C OHH C OHH CH2OH D-glucose OH C HHO C OHH C OHH CH2OH CH2OH C O D-fructose Monosaccharides:
  • 11. cabohydrates Oligosaccharides • The carbohydrates which can give two to ten monosaccharides on hydrolysis.so they can be disaccharides like sucrose,maltose,lactose etc polysaccharides • The carbohydrates which can yeild more than ten monosaccharide units on hydrolysis.eg : starch cellulose,glycogen etc
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  • 16. Protein • Proteins serve many vital functions in our body: – Structural support – Speeding up chemical reactions – Transport of molecules – …and many more!
  • 18. Protein • All proteins contain carbon, hydrogen, oxygen and nitrogen. • In addition, sulfur may be present as well. • Monomer: Amino acid • Polymer: Protein or polypeptide – A peptide is a chain of amino acids, so a polypeptide is several chains put together.
  • 19. Amino acids • amino group, carboxyl group, hydrogen and a variable side group (residue) each joined to a central carbon atom H2N-C-COOH R H
  • 20. Protein • Amino acids are bound together through dehydration synthesis. – The C-group of one amino acid binds to the N-group of another. – We call these bonds peptide bonds.
  • 21. Protein • Proteins have four phases of production: – Primary: Amino acids are bound together. – Secondary: Individual amino acids are bent and molded as needed. – Tertiary: The entire chain of amino acids is bent and molded as needed, forming a sub-unit. – Quaternary: Multiple completed sub-units are fitted together to make a complete protein.
  • 22. Types of protein • On the basis of molecular structure • Fibrous proteins • Involved in structure: tendons ligaments blood clots (e.g. collagen and spiders silk) • Contractile proteins in movement: muscle, microtubules (cytoskelton, mitotic spindle, cilia, flagella). • Globular proteins • most proteins which move around (e.g. albumen, casein in milk) • Proteins with binding sites: enzymes, hemoglobin, immunoglobulins, membrane receptor sites.
  • 25. Two types of nucleic acid are found • Deoxyribonucleic acid (DNA) • Ribonucleic acid (RNA)
  • 26. The distribution of nucleic acids in the eukaryotic cell • DNA is found in the nucleus with small amounts in mitochondria and chloroplasts • RNA is found throughout the cell
  • 27. DNA as genetic material: The circumstantial evidence 1. Present in all cells and virtually restricted to the nucleus 2. The amount of DNA in somatic cells (body cells) of any given species is constant (like the number of chromosomes) 3. The DNA content of gametes (sex cells) is half that of somatic cells. In cases of polyploidy (multiple sets of chromosomes) the DNA content increases by a proportional factor 4. The mutagenic effect of UV light peaks at 253.7nm. The peak for the absorption of UV light by DNA
  • 28. NUCLEIC ACID STRUCTURE • Nucleic acids are polynucleotides • Their building blocks are nucleotides
  • 29. NUCLEOTIDE STRUCTURE PHOSPHATE SUGAR Ribose or Deoxyribose NUCLEOTIDE BASE PURINES PYRIMIDINES Adenine (A) Guanine(G) Cytocine (C) Thymine (T) Uracil (U)
  • 30. Ribose is a pentose C1 C5 C4 C3 C2 O
  • 31. RIBOSE DEOXYRIBOSE CH2OH H OH C C OH OH C O H HH C CH2OH H OH C C OH H C O H HH C Spot the difference
  • 32. THE SUGAR-PHOSPHATE BACKBONE • The nucleotides are all orientated in the same direction • The phosphate group joins the 3rd Carbon of one sugar to the 5th Carbon of the next in line. P P P P P P
  • 33. ADDING IN THE BASES • The bases are attached to the 1st Carbon • Their order is important It determines the genetic information of the molecule P P P P P P G C C A T T
  • 34. DNA IS MADE OF TWO STRANDS OF POLYNUCLEOTIDE P P P P P P C G G T A A P P P P P P G C C A T T Hydrogen bonds
  • 35. DNA IS MADE OF TWO STRANDS OF POLYNUCLEOTIDE • The sister strands of the DNA molecule run in opposite directions (antiparallel) • They are joined by the bases • Each base is paired with a specific partner: A is always paired with T G is always paired with C Purine with Pyrimidine • Thus the sister strands are complementary but not identical • The bases are joined by hydrogen bonds, individually weak but collectively strong.
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  • 40. Fatty acids •They are basic building blocks of lipids(simplest lipids). •Fatty acids are carboxylic acids.
  • 41. Classification of fatty acids Fatty acids saturated unsaturat ed monounsaturated polyunsaturated
  • 42. FATTY ACIDS Saturation  Saturated fatty acid – carbon chains filled with hydrogen atoms (no C=C double bonds) 1. Saturated fat – triglyceride containing 3 saturated fatty acids, such as animal fats (butter, lard) & tropical oils (palm, coconut) 2. Appear solid at room temperature
  • 43. FATTY ACIDS  Unsaturated fatty acid – carbon chains lack some hydrogens (>1 C=C double bond) 1. Monounsaturated fat – triglyceride containing fatty acids with 1 double bond; i.e. canola & olive oil 2. Polyunsaturated fat- triglycerides containing a high % of fatty acids with >2 double bonds; i.e. corn, safflower, soybean, sunflower oils and fish; 3. Appear liquid at room temperature
  • 44. Saturated fatty acid • Length of carbon chain Copyright 2005 Wadsworth Group, a division of Thomson Learning Stearic acid – 18-carbon, saturated Simplified structure
  • 45. Oleic acid – 18-carbon, monounsaturated Linoleic acid – 18-carbon, polyunsaturated
  • 46. Fatty Acids are amphipathic molecules. Why? Because they have both polar(hydrophilic) and non- polar(hydrophobic) portions in their structure
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  • 48. TYPES OF LIPIDS 1. Triglycerides 2. Phospholipids 3. Sterols
  • 49. TRIGLYCERIDES • Triglycerides – Fats & Oils 1. Predominate form of fat in foods and major storage form of fat in the body 2. Structure – composed of 3 fatty acids + glycerol
  • 50. PHOSPHOLIPIDS • Phospholipids – similar to triglycerides in structure except only 2 fatty acids + choline Phospholipids in foods: Lecithin, egg yolks, soybeans, wheat germ, peanuts
  • 51. Lecithin Copyright 2005 Wadsworth Group, a division of Thomson Learning
  • 54. STEROLS  Important part of: 1. Sex hormones – testosterone 2. Vitamin D 3. Bile (aids fat digestion) 4. Adrenal hormones - cortisol 5. Cholesterol – in foods and made by the liver; dietary sources include egg yolks, liver, meats, dairy products