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© analytikLtd
analytikLtd
VideometerLab 3 Multi-Spectral Imaging System
MSI for Grain and Seed Analysis
www.analytik.co.uk
© analytikLtd
Traditional colour imaging uses
three broad bands of colour:
Red, Green and Blue
Normal Colour Imaging
© analytikLtd
Normal Colour Imaging
• RGB photographs have
limited spectral resolution
• Chlorophyll a and b give
almost the same RGB
signal and are not
spectrally separated
Chloro-a High Low High
Chloro-b High Low High
© analytikLtd
Multispectral Imaging
Chloro-a High Low Low High
Chloro-b Med High Med Low
• Using just 4 wavelength
bands with tightly defined
ranges, Chlorophyll a and b
can easily be distinguished
• VideometerLab 3 uses 19
wavelength bands
© analytikLtd
Multispectral Imaging
• Many images obtained at
selective wavelength bands
• Each image pixel contains
spectral data points
• Spectral signature reveals
chemo-specific information
• See spatial location of
surface chemical variation
Ultraviolet Near-Infrared
Infra-Red
Red
Yellow
Green
Blue
Ultra-Violet
© analytikLtd
VideometerLab 3 Schematic
• Narrowband illumination
provided by 19 LEDs between
375nm-970nm (UV-Vis-VNIR)
• Integrating sphere diffuses light
onto sample
• 2056x2056 CCD camera captures
reflectance at each LED
wavelength for each pixel
• Emission filter wheel for
longpass/bandpass filtering
• Bright-field or dark-field lighting
for translucency or diffuse scatter
imaging
Camera
LEDs
Integrating
sphere
Emission
filter
wheel
Sample
© analytikLtd
VideometerLab 3 Schematic
• Precise lighting control for optimal
illumination of each sample across
whole spectrum
• Diffuse light on sample ensures
even lighting from all directions
• Broadband camera spectrally
and spatially calibrated (NIST)
• Emission filters enable
multispectral reflectance and
fluorescence imaging abilities
• Powerful, user-friendly image
analysis and quantification
software for data and modelling
Camera
LEDs
Integrating
sphere
Emission
filter
wheel
Sample
© analytikLtd
VideometerLab 3 Schematic
© analytikLtd
MSI Analysis Process
Back to Index
• The VideometerLab identifies the spectral signature of these sesame
seeds
© analytikLtd
MSI Analysis Process
Back to Index
• The VideometerLab identifies the spectral signature of these sesame
seeds
© analytikLtd
MSI Analysis Process
Back to Index
• It will then identify that there is something not matching the ‘sesame
seed’ spectral signature in this mix
© analytikLtd
MSI Analysis Process
Back to Index
• It will then identify that there is something not matching the ‘sesame
seed’ spectral signature in this mix
© analytikLtd
MSI Analysis Process
Back to Index
• Magnification of the previous image
1mm
© analytikLtd
• A false colour image to aid visual assessment of chitting is
simply four clicks of the mouse
Chitting
Back to Index
© analytikLtd
• The dark spots on the right image are the beginning of the
germination
Chitting
Back to Index
© analytikLtd
• They can also be counted and analysed quantitively very easily.
The image on the left has highlighted only areas of chitting
Chitting
Back to Index
© analytikLtd
• Alternatively, the ratio of germinating to non-germinating
seeds could be measured automatically
Chitting
Back to Index
© analytikLtd
• The same types of analysis can be applied to rootlets
Rootlets
Back to Index
© analytikLtd
• Acrospire modeling compares the length of the acrospire with the length
of the seed, and in contrast to other methods only requires boiling the
seed in water for ten minutes
Acrospire Length
Back to Index
© analytikLtd
• Methods of estimating the ratio of embryo to husk in grist
are time consuming
Grist  Draff
Back to Index
© analytikLtd
• The Videometer can tell between embryo and husk with
almost perfect clarity in less than ten seconds
Grist  Draff
Back to Index
© analytikLtd
• The Videometer can quantify the important information
clearly and precisely
Grist  Draff
Back to Index
Husk Area (mm2) Embryo Area (mm2) Ratio
3068 230 13.3
© analytikLtd
• By masking out all non-data from an image, the Videometer
can distinguish long, thin Durum from short, fat Mascot grains
Variety - Geometric
Back to Index
© analytikLtd
• The table to the right shows some of the data which the
Videometer uses to classify this mixed sample
Variety - Geometric
Back to Index
© analytikLtd
• Alternatively, the Videometer can use spectral data to distinguish
between UV-absorbent Optic (left) and UV-reflectent Concerto (right)
Variety - Spectral
Back to Index
© analytikLtd
• The ‘redder’ a grain, the more likely it is to be Optic and the ‘bluer’ the
more likely Concerto. The background has been arbitrarily coloured red
Variety - Spectral
Back to Index
© analytikLtd
• This can also be quantified. In a real setting, you would use both spatial
and spectral data to get the most accurate discrimination possible
Variety - Spectral
Back to Index
Really… % Similarity
Optic
% Similarity
Concerto
Optic 97.25 2.75
Concerto 1.25 98.75
© analytikLtd
• By teaching the Videometer the difference between a skinned and
intact grain, it can instantly replace a labour-intensive application by
quantifying the percentage of skinned grains
Skinning
Back to Index
© analytikLtd
• Some details from the last slide
Skinning
Back to Index
© analytikLtd
• Some of these grains have strange black tips, highlighted in
the image on the right
Anomaly Analysis
Back to Index
© analytikLtd
• Detail of the previous slide
Anomaly Analysis
Back to Index
© analytikLtd
• This slide shows a quantification of the differences in the
ultra-blue band between ‘normal grain’ and ‘black tip’
Anomaly Analysis
Back to Index
© analytikLtd
• This graph is the full spectrum for the ‘normal grain’ (the two blue lines)
and the ‘black tip’ (the red line), clearly showing the difference
Anomaly Analysis
Back to Index
© analytikLtd
• This slide demonstrates how a false-colour image of fusarium-infected
grains can help an operator determine the extent of the infection
Fusarium
Back to Index
© analytikLtd
• A more systematic model has been developed by Videometer (in
collaboration with the Carlsberg Research Institute) showing an
impressive R2 value of 0.85 versus real-time PCR
Fusarium
Back to Index
© analytikLtd
• Though the Videometer is a surface technique, it can quantify levels of
hydration in grain with a small amount of sample preparation. Light blue
areas are not hydrated
Hydration
Back to Index
© analytikLtd
The Videometer is an excellent tool for
many grain and seed applications, and
can be used throughout the quality
control and R&D cycle – from raw
material intake to final product QC and
lab analysis
Videometer can perform other roles too.
If a feasibility study such as those shown
here interest you, my contact details are
on the next slide
Conclusions
Back to Index
© analytikLtd
Contact
Back to Index
analytikLtd
Adrian Waltho – Sales Specialist
Tel: +44 (0)870 991 4044 Fax: +44 (0)870 135 2488 Email: adrian.waltho@analytik.co.uk
Barn B, 2 Cygnus Business Park, Middle Watch, Swavesey, Cambridgeshire, CB24 4AA
www.analytik.co.uk

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Multispectral Imaging of Grains and Seeds with VideometerLab 3

  • 1. © analytikLtd analytikLtd VideometerLab 3 Multi-Spectral Imaging System MSI for Grain and Seed Analysis www.analytik.co.uk
  • 2. © analytikLtd Traditional colour imaging uses three broad bands of colour: Red, Green and Blue Normal Colour Imaging
  • 3. © analytikLtd Normal Colour Imaging • RGB photographs have limited spectral resolution • Chlorophyll a and b give almost the same RGB signal and are not spectrally separated Chloro-a High Low High Chloro-b High Low High
  • 4. © analytikLtd Multispectral Imaging Chloro-a High Low Low High Chloro-b Med High Med Low • Using just 4 wavelength bands with tightly defined ranges, Chlorophyll a and b can easily be distinguished • VideometerLab 3 uses 19 wavelength bands
  • 5. © analytikLtd Multispectral Imaging • Many images obtained at selective wavelength bands • Each image pixel contains spectral data points • Spectral signature reveals chemo-specific information • See spatial location of surface chemical variation Ultraviolet Near-Infrared Infra-Red Red Yellow Green Blue Ultra-Violet
  • 6. © analytikLtd VideometerLab 3 Schematic • Narrowband illumination provided by 19 LEDs between 375nm-970nm (UV-Vis-VNIR) • Integrating sphere diffuses light onto sample • 2056x2056 CCD camera captures reflectance at each LED wavelength for each pixel • Emission filter wheel for longpass/bandpass filtering • Bright-field or dark-field lighting for translucency or diffuse scatter imaging Camera LEDs Integrating sphere Emission filter wheel Sample
  • 7. © analytikLtd VideometerLab 3 Schematic • Precise lighting control for optimal illumination of each sample across whole spectrum • Diffuse light on sample ensures even lighting from all directions • Broadband camera spectrally and spatially calibrated (NIST) • Emission filters enable multispectral reflectance and fluorescence imaging abilities • Powerful, user-friendly image analysis and quantification software for data and modelling Camera LEDs Integrating sphere Emission filter wheel Sample
  • 9. © analytikLtd MSI Analysis Process Back to Index • The VideometerLab identifies the spectral signature of these sesame seeds
  • 10. © analytikLtd MSI Analysis Process Back to Index • The VideometerLab identifies the spectral signature of these sesame seeds
  • 11. © analytikLtd MSI Analysis Process Back to Index • It will then identify that there is something not matching the ‘sesame seed’ spectral signature in this mix
  • 12. © analytikLtd MSI Analysis Process Back to Index • It will then identify that there is something not matching the ‘sesame seed’ spectral signature in this mix
  • 13. © analytikLtd MSI Analysis Process Back to Index • Magnification of the previous image 1mm
  • 14. © analytikLtd • A false colour image to aid visual assessment of chitting is simply four clicks of the mouse Chitting Back to Index
  • 15. © analytikLtd • The dark spots on the right image are the beginning of the germination Chitting Back to Index
  • 16. © analytikLtd • They can also be counted and analysed quantitively very easily. The image on the left has highlighted only areas of chitting Chitting Back to Index
  • 17. © analytikLtd • Alternatively, the ratio of germinating to non-germinating seeds could be measured automatically Chitting Back to Index
  • 18. © analytikLtd • The same types of analysis can be applied to rootlets Rootlets Back to Index
  • 19. © analytikLtd • Acrospire modeling compares the length of the acrospire with the length of the seed, and in contrast to other methods only requires boiling the seed in water for ten minutes Acrospire Length Back to Index
  • 20. © analytikLtd • Methods of estimating the ratio of embryo to husk in grist are time consuming Grist Draff Back to Index
  • 21. © analytikLtd • The Videometer can tell between embryo and husk with almost perfect clarity in less than ten seconds Grist Draff Back to Index
  • 22. © analytikLtd • The Videometer can quantify the important information clearly and precisely Grist Draff Back to Index Husk Area (mm2) Embryo Area (mm2) Ratio 3068 230 13.3
  • 23. © analytikLtd • By masking out all non-data from an image, the Videometer can distinguish long, thin Durum from short, fat Mascot grains Variety - Geometric Back to Index
  • 24. © analytikLtd • The table to the right shows some of the data which the Videometer uses to classify this mixed sample Variety - Geometric Back to Index
  • 25. © analytikLtd • Alternatively, the Videometer can use spectral data to distinguish between UV-absorbent Optic (left) and UV-reflectent Concerto (right) Variety - Spectral Back to Index
  • 26. © analytikLtd • The ‘redder’ a grain, the more likely it is to be Optic and the ‘bluer’ the more likely Concerto. The background has been arbitrarily coloured red Variety - Spectral Back to Index
  • 27. © analytikLtd • This can also be quantified. In a real setting, you would use both spatial and spectral data to get the most accurate discrimination possible Variety - Spectral Back to Index Really… % Similarity Optic % Similarity Concerto Optic 97.25 2.75 Concerto 1.25 98.75
  • 28. © analytikLtd • By teaching the Videometer the difference between a skinned and intact grain, it can instantly replace a labour-intensive application by quantifying the percentage of skinned grains Skinning Back to Index
  • 29. © analytikLtd • Some details from the last slide Skinning Back to Index
  • 30. © analytikLtd • Some of these grains have strange black tips, highlighted in the image on the right Anomaly Analysis Back to Index
  • 31. © analytikLtd • Detail of the previous slide Anomaly Analysis Back to Index
  • 32. © analytikLtd • This slide shows a quantification of the differences in the ultra-blue band between ‘normal grain’ and ‘black tip’ Anomaly Analysis Back to Index
  • 33. © analytikLtd • This graph is the full spectrum for the ‘normal grain’ (the two blue lines) and the ‘black tip’ (the red line), clearly showing the difference Anomaly Analysis Back to Index
  • 34. © analytikLtd • This slide demonstrates how a false-colour image of fusarium-infected grains can help an operator determine the extent of the infection Fusarium Back to Index
  • 35. © analytikLtd • A more systematic model has been developed by Videometer (in collaboration with the Carlsberg Research Institute) showing an impressive R2 value of 0.85 versus real-time PCR Fusarium Back to Index
  • 36. © analytikLtd • Though the Videometer is a surface technique, it can quantify levels of hydration in grain with a small amount of sample preparation. Light blue areas are not hydrated Hydration Back to Index
  • 37. © analytikLtd The Videometer is an excellent tool for many grain and seed applications, and can be used throughout the quality control and R&D cycle – from raw material intake to final product QC and lab analysis Videometer can perform other roles too. If a feasibility study such as those shown here interest you, my contact details are on the next slide Conclusions Back to Index
  • 38. © analytikLtd Contact Back to Index analytikLtd Adrian Waltho – Sales Specialist Tel: +44 (0)870 991 4044 Fax: +44 (0)870 135 2488 Email: adrian.waltho@analytik.co.uk Barn B, 2 Cygnus Business Park, Middle Watch, Swavesey, Cambridgeshire, CB24 4AA www.analytik.co.uk