TLI 2012: Data management for chickpea and groundnut research

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TLI 2012: Data management for chickpea and groundnut research

  1. 1. Chickpea & GroundnutResearch Data Management in Tropical Legumes1Annual Meeting – Tropical Legumes 1 07 May - 11 May, 2012 P.V.N.S. Prasad ICRISAT
  2. 2. Outline• Introduction• Present Status  Trait Dictionaries  Evaluation data  Genotyping data  Mapping data  QTL data• Next Steps
  3. 3. Introduction• Crop Lead Center• Trait Dictionaries and establish crop ontologies• Catalogue of TLI Data sets• Data for all TLI datasets• Storing data into databases
  4. 4. Workshops and Training• TL Data Managers training Workshop (9-19 August 2011) held at GCP Headquarters at CIMMYT in Mexico.• Crop Ontology Community of Practice Workshop, 19- 22 March 2012 held at Bioversity International, Maccarese, Italy• Data Management Session at Integrated Breeding Platform Project Annual Meeting to be held on 4th to 9th June 2012 at Beijing, China.
  5. 5. Trait Dictionaries• Trait Dictionaries for Fieldbook Development• Ranking of traits• Crop Ontologies established
  6. 6. Catalogue of TLI Data• Catalogue of TL1 datasets - Compiled with the help of the reports submitted.• Included Embargo, Responsible Person and Time Required
  7. 7. Accessibility• Evaluation - ICIS Workbook, Retriever & Zeus• Germplasm - ICIS Setgen, GMS search• Mapping data - GDMS, CMap• Genotyping data - GDMS, CMap• QTL data - GDMS , CMap• Marker data - GDMS
  8. 8. Next Steps• New Traits• Data Curation• IB Field book• TLI Phase II• Documentation http://wiki.cimmyt.org/confluence/display/MBP/Tropical Legume (Chickpeas) http://wiki.cimmyt.org/confluence/display/MBP/Tropical Legume (Groundnuts)
  9. 9. Acknowledgements• TL1 Chickpea and Groundnut Group• Generation Challenge Program• Integrated Breeding Platform• Bioinformatics@ICRISAT
  10. 10. Thank you..

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