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Chickpea & Groundnut
Research Data Management
   in Tropical Legumes1
Annual Meeting – Tropical Legumes 1
        07 May - 11 May, 2012


           P.V.N.S. Prasad
              ICRISAT
Outline

• Introduction

• Present Status
     Trait Dictionaries
     Evaluation data
     Genotyping data
     Mapping data
     QTL data

• Next Steps
Introduction

• Crop Lead Center

• Trait Dictionaries and establish crop ontologies

• Catalogue of TLI Data sets

• Data for all TLI datasets

• Storing data into databases
Workshops and Training

• TL Data Managers training Workshop (9-19 August
  2011) held at GCP Headquarters at CIMMYT in Mexico.

• Crop Ontology Community of Practice Workshop, 19-
  22 March 2012 held at Bioversity International,
  Maccarese, Italy

• Data Management Session at Integrated Breeding
  Platform Project Annual Meeting to be held on 4th to
  9th June 2012 at Beijing, China.
Trait Dictionaries

• Trait Dictionaries for Fieldbook Development

• Ranking of traits

• Crop Ontologies established
Catalogue of TLI Data

• Catalogue of TL1 datasets - Compiled with the help
  of the reports submitted.

• Included Embargo, Responsible Person and Time
  Required
Accessibility
• Evaluation - ICIS Workbook, Retriever & Zeus

• Germplasm - ICIS Setgen, GMS search

• Mapping data - GDMS, CMap

• Genotyping data - GDMS, CMap

• QTL data - GDMS , CMap

• Marker data - GDMS
Next Steps
• New Traits

• Data Curation

• IB Field book

• TLI Phase II

• Documentation
 http://wiki.cimmyt.org/confluence/display/MBP/Tropical Legume (Chickpeas)

 http://wiki.cimmyt.org/confluence/display/MBP/Tropical Legume (Groundnuts)
Acknowledgements

• TL1 Chickpea and Groundnut Group

• Generation Challenge Program

• Integrated Breeding Platform

• Bioinformatics@ICRISAT
Thank you..

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TLI 2012: Data management for chickpea and groundnut research

  • 1. Chickpea & Groundnut Research Data Management in Tropical Legumes1 Annual Meeting – Tropical Legumes 1 07 May - 11 May, 2012 P.V.N.S. Prasad ICRISAT
  • 2. Outline • Introduction • Present Status  Trait Dictionaries  Evaluation data  Genotyping data  Mapping data  QTL data • Next Steps
  • 3. Introduction • Crop Lead Center • Trait Dictionaries and establish crop ontologies • Catalogue of TLI Data sets • Data for all TLI datasets • Storing data into databases
  • 4. Workshops and Training • TL Data Managers training Workshop (9-19 August 2011) held at GCP Headquarters at CIMMYT in Mexico. • Crop Ontology Community of Practice Workshop, 19- 22 March 2012 held at Bioversity International, Maccarese, Italy • Data Management Session at Integrated Breeding Platform Project Annual Meeting to be held on 4th to 9th June 2012 at Beijing, China.
  • 5. Trait Dictionaries • Trait Dictionaries for Fieldbook Development • Ranking of traits • Crop Ontologies established
  • 6. Catalogue of TLI Data • Catalogue of TL1 datasets - Compiled with the help of the reports submitted. • Included Embargo, Responsible Person and Time Required
  • 7. Accessibility • Evaluation - ICIS Workbook, Retriever & Zeus • Germplasm - ICIS Setgen, GMS search • Mapping data - GDMS, CMap • Genotyping data - GDMS, CMap • QTL data - GDMS , CMap • Marker data - GDMS
  • 8. Next Steps • New Traits • Data Curation • IB Field book • TLI Phase II • Documentation http://wiki.cimmyt.org/confluence/display/MBP/Tropical Legume (Chickpeas) http://wiki.cimmyt.org/confluence/display/MBP/Tropical Legume (Groundnuts)
  • 9. Acknowledgements • TL1 Chickpea and Groundnut Group • Generation Challenge Program • Integrated Breeding Platform • Bioinformatics@ICRISAT