TLI 2012: Data management for chickpea and groundnut research
1. Chickpea & Groundnut
Research Data Management
in Tropical Legumes1
Annual Meeting – Tropical Legumes 1
07 May - 11 May, 2012
P.V.N.S. Prasad
ICRISAT
2. Outline
• Introduction
• Present Status
Trait Dictionaries
Evaluation data
Genotyping data
Mapping data
QTL data
• Next Steps
3. Introduction
• Crop Lead Center
• Trait Dictionaries and establish crop ontologies
• Catalogue of TLI Data sets
• Data for all TLI datasets
• Storing data into databases
4. Workshops and Training
• TL Data Managers training Workshop (9-19 August
2011) held at GCP Headquarters at CIMMYT in Mexico.
• Crop Ontology Community of Practice Workshop, 19-
22 March 2012 held at Bioversity International,
Maccarese, Italy
• Data Management Session at Integrated Breeding
Platform Project Annual Meeting to be held on 4th to
9th June 2012 at Beijing, China.
5. Trait Dictionaries
• Trait Dictionaries for Fieldbook Development
• Ranking of traits
• Crop Ontologies established
6. Catalogue of TLI Data
• Catalogue of TL1 datasets - Compiled with the help
of the reports submitted.
• Included Embargo, Responsible Person and Time
Required
7. Accessibility
• Evaluation - ICIS Workbook, Retriever & Zeus
• Germplasm - ICIS Setgen, GMS search
• Mapping data - GDMS, CMap
• Genotyping data - GDMS, CMap
• QTL data - GDMS , CMap
• Marker data - GDMS
8. Next Steps
• New Traits
• Data Curation
• IB Field book
• TLI Phase II
• Documentation
http://wiki.cimmyt.org/confluence/display/MBP/Tropical Legume (Chickpeas)
http://wiki.cimmyt.org/confluence/display/MBP/Tropical Legume (Groundnuts)
9. Acknowledgements
• TL1 Chickpea and Groundnut Group
• Generation Challenge Program
• Integrated Breeding Platform
• Bioinformatics@ICRISAT