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TLI 2012: Data management for chickpea and groundnut research

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TLI 2012: Data management for chickpea and groundnut research

  1. 1. Chickpea & Groundnut Research Data Management in Tropical Legumes1 Annual Meeting – Tropical Legumes 1 07 May - 11 May, 2012 P.V.N.S. Prasad ICRISAT
  2. 2. Outline • Introduction • Present Status  Trait Dictionaries  Evaluation data  Genotyping data  Mapping data  QTL data • Next Steps
  3. 3. Introduction • Crop Lead Center • Trait Dictionaries and establish crop ontologies • Catalogue of TLI Data sets • Data for all TLI datasets • Storing data into databases
  4. 4. Workshops and Training • TL Data Managers training Workshop (9-19 August 2011) held at GCP Headquarters at CIMMYT in Mexico. • Crop Ontology Community of Practice Workshop, 19- 22 March 2012 held at Bioversity International, Maccarese, Italy • Data Management Session at Integrated Breeding Platform Project Annual Meeting to be held on 4th to 9th June 2012 at Beijing, China.
  5. 5. Trait Dictionaries • Trait Dictionaries for Fieldbook Development • Ranking of traits • Crop Ontologies established
  6. 6. Catalogue of TLI Data • Catalogue of TL1 datasets - Compiled with the help of the reports submitted. • Included Embargo, Responsible Person and Time Required
  7. 7. Accessibility • Evaluation - ICIS Workbook, Retriever & Zeus • Germplasm - ICIS Setgen, GMS search • Mapping data - GDMS, CMap • Genotyping data - GDMS, CMap • QTL data - GDMS , CMap • Marker data - GDMS
  8. 8. Next Steps • New Traits • Data Curation • IB Field book • TLI Phase II • Documentation http://wiki.cimmyt.org/confluence/display/MBP/Tropical Legume (Chickpeas) http://wiki.cimmyt.org/confluence/display/MBP/Tropical Legume (Groundnuts)
  9. 9. Acknowledgements • TL1 Chickpea and Groundnut Group • Generation Challenge Program • Integrated Breeding Platform • Bioinformatics@ICRISAT
  10. 10. Thank you..

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