X-raydiffraction has a very significant role in crystal determination.. specially in the field of Pharmaceutical analysis.
It contains the requirement for M.pharm 1st year according to RGUHS syllabus.
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XRD Techniques for Crystal Structure Analysis
1. X – RAY DIFFRACTION
PRESENTED BY
Iswar Hazarika
Ist yr. M. PHARM.
DEPT. OF PHARMACOLOGY
The Oxford College of Pharmacy,
2. CONTENTS
1. Introduction
2. Production of X-Ray
3. Elementary Crystallography
4. Miller indices
5. Bragg’s law
6. Instrumentation
7. X-Ray diffraction method
8. Application of X-ray diffraction
3. 1. Introduction:
X-Ray Definition:X-Rays are short wavelength
electromagnetic radiation between UV & gamma ray,
which consist of wavelength in the region about 0.1Å to
100Å
For analytical purpose, the range of 0.7-2.0 Ao is the
most useful region.
A German professor Rontgen in 1895 discovered X-ray
while working with a discharge tube
Barium platinocyanide screen placed near discharge
tube began to glow. The glow continued even when a
wooden screen was placed between them
These x-rays could pass through bodies, which are opaque
to ordinary light
4.
5. 2. X-Ray generation
For analytical purposes, X-rays are obtained in three
ways:
1. by bombardment of a metal with a beam of high-
energy electrons,
2. by exposure of a substance to a primary beam of X-
rays in order to generate a secondary beam of X-ray
fluorescence,
3. by use of a radioactive source whose decay process
results in X-ray emission,
6. How does X-ray generate:?
Process of producing X-Rays may be
visualised in terms of Bhor’s theory of
atomic Structure
When a fast moving electron impinges on
an atom, it may knock out an electron
completely from one of the inner shell of
the atom
Following that, one of the electron from
outer layer will fall into the vacated orbital
with simultaneous emission of X-Ray
proton
7.
8. The X-rays are named according to the
shell from which the electron is knocked
out, eg. K X-ray, L X-ray etc.
K X-ray is again divided into Kα & kβ
depending on whether electron falls from
the closest shell or the next nearest shell
Kα is again named Kα1 & Kα2 according
to the energy levels of the different
electrons in L-shell & kβ1, kβ2 for kβ rays.
The energy of these waves is given by the
equation
hν = E(outer shell)- E(inner shell)
9. 3. Elementary Crystallography
Crystallography: Science of study of crystal
forms.
Crystal: A homogenous solid formed by repeating
3dimensional pattern of atoms, ions or molecules
& having smooth external surface
The aspects of crystallography most important to
the effective interpretation of XRD data are:
I. conventions of lattice description,
II. unit cells,
III. lattice planes,
IV. d-spacing and Miller indices,
V. crystal structure and symmetry elements
10. Unit cell
The smallest group of particles within a
crystal that retains the geometric shape of
the crystal is known as a unit cell
A crystal lattice is a repeating array of any
one of fourteen kinds of unit cells.
There are four types of unit cells that can
be associated with each crystal system.
14. The Bravais lattices
When the crystal systems are combined with the
various possible lattice centerings, we arrive at the
Bravais lattices.
They describe the geometric arrangement of the
lattice points, and thereby the translational
symmetry of the crystal.
In three dimensions, there are 14 unique Bravais
lattices which are distinct from one another in the
translational symmetry they contain. All crystalline
materials recognized until now (not including
quasicrystals) fit in one of these arrangements.
The Bravais lattices are sometimes referred to as
space lattices.
15.
16. Lattice
◦ Lattice: A lattice is a repeating array of any one
of fourteen kinds of unit cells
◦ If in an actual crystal, we replace all the atoms
or group of atoms or ions which are called
structural units, by points we get a three
dimensional network or arrangement of points
designated as the lattice.
Lattice Notation:
Lattice points are specified without brackets –100,
101, 102, etc.
Lattice planes: are defined in terms of the Miller
indices
17.
18. 4. MILLER INDICES:
Miller Indices are the reciprocals of the fractional
intercepts (with fractions cleared) which the plane makes
with the crystallographic x,y,z axes of the three
nonparallel edges of the cubic unit cell.
Spacing between planes in a cubic crystal
where dhkl = interplanar spacing between planes with
Miller indices h,k,and l.
a = lattice constant (edge of the cube)
h, k, and l = Miller indices of cubic planes being
considered.
l+k+h
a
=d 222
hkl
19. Example:
The plane shown intercepts a at100, b at
010 and c at 002.
The Miller index of the plane is thus
calculated as 1/1(a), 1/1(b), 1/2(c), and
reduced to integers as 2a,2b,1c.
Miller indices are by convention given in
parentheses, i.e., (221).
20.
21. Interference
A source of light gives out energy which is
uniformly distributed in the surrounding
medium.
If two or more light waves superimpose ,then the
distribution of energy is not uniform.
If crest of one wave falls on the crest of the other
and trough of one wave falls on the trough of
other, the amplitude of the resultant wave
increases.
On the other hand ,if the crest of one wave falls
on the trough of the other the resultant
amplitude decreases
Therefore the light intensity decreases.
The modification in the distribution of light
energy due to superposition of two or more
waves is called interference
22. 5. BRAGG’s EQUATION
dhkl
The path difference between ray 1 and ray 2 = 2dhkl Sin
For constructive interference: n = 2dhkl Sin
Ray 1
Ray 2
Deviation = 2
23. Condition for Bragg’s law
Two beams with identical wavelength and phase
approach a crystalline solid and are scattered off
two different atoms within it.
The lower beam traverses an extra length of
2dsinθ
Constructive interference occurs when this length
is equal to an integer multiple of the wavelength
of the radiation
A diffraction pattern is obtained by measuring
the intensity of scattered waves as a function of
scattering angle
Very strong intensities known as Bragg peaks are
obtained in the diffraction pattern when
scattered waves satisfy the Bragg condition
28. I) Production of x rays
X-rays are generated when high velocity
electron impinge on a metal target
Filament of tungsten is a cathode which is
heated by a battery to emit electron
(cathode rays)
The electron on striking the target (which
is a +ve voltage in the form of anode) will
transfer their energy to its metallic
surface and it gives of X-ray radiation
Choice of target metal depends upon the
sample to be examined
29.
30. 2) Collimator
X-rays produced by the target are
randomly directed
They form a hemisphere with a target at
the center
In order to get a narrow beam of x-rays,
collimator are used
It consist of two sets of closely packed
metal plates separated by a small gap
It absorbs all the X-ray except the narrow
beam that passes between the gap
33. a) Filter
Filter is a window of material that absorbs
undesirable radiation but allows the radiation
of required wavelength to pass
This method makes use of large difference in
the mass absorption coefficient
Example:
When Zirconium filter is used for
molybdenum radiation
Zirconium absorbs strongly the radiation of
molybdenum at short wavelength but weakly
absorb the Kα lines of molybdenum
Thus it allow Kβ lines to pass
hence zirconium is a β-filter
34.
35. b) Crystal Monochromator
It is made up of suitable crystalline
material positioned in the X-ray beam so
that the angle of reflecting planes satisfy
Braggs equation for required wavelength
It splits the beam into the component
wavelength in the same way as the prism
Such a crystalline substance is called an
analysing crystal
Its of two type:
◦ Flat crystal monochromator
◦ Curved crystal monochromator
38. Photographic Methods
A plane or cylindrical film is
used to record the position
& intensity of the x-ray
beam
Film after exposing to x-ray
is developed
The blackening of developed
film is expressed in terms of
density units D given by
I0 & I refer to incident &
transmitted intensities of x-rays
D is related to total x-ray
energy that causes the
blackening of photographic film
Value of D is measured by
densitometer
39. Counter Methods
a) Geiger-muller tube counter:-
Geiger tube is filled with inert gas like argon
The central wire anode is maintained at a
positive potential of 800-2500V
When x-ray enters the Geiger tube, it
undergoes collision with the filling gas resulting
in the production of ion pairs
The electron produced moves towards the
central anode and the +ve ion moves towards
the outer electrode
The electron is accelerated by the potential
gradient and causes the ionisation of large
number of argon atoms resulting in production
of avalanche of electrons that are travelling
towards the central anode
41. b) Proportional Counter
Its construction is same as that of Geiger tube counter.
Gas used - Xenon & Krypton
(heavy gas is used) ?
Because it is easily ionised
The voltage applied is less than that of Geiger plateau
Dead time – (~0.2 µs)
Sensitivity & efficiency – is comparable with Geiger
tube counter
42. c) Scintillation Detector
In Scintillation detector, there is a large NaI
crystal activated with a small amount of thallium
When X-ray is incident upon the crystal, the
pulses of visible light are emitted
Visible light so obtained can be detected by a
photomultiplier tube
Crystals used – sodium iodide, anthracene,
naphthalene, & p-terphenol in
xylene.
Dead time - very short and this allows for
counting of high rates
43.
44. d) Solid state semi-conductor detector
In this type of detector, the electrons produced by X-ray
beam are promoted to conduction band
The current which flows is directly proportional to the
incident x-ray energy.
Main disadvantage – we have to use this detector at low
temperature to minimise the noise & prevent deterioration
in characteristics
45. e) Semi-conductor Detectors
Si(Li) and Ge(Li)
Principle of Semi-conductor detector is
same as proportional counter, except the
materials used are in a solid state
When x-ray falls on a semiconductor or a
silicon lithium-drifted detector, it
generates an electron (-e) and a hole
(+e).
47. X-Ray Diffraction Methods
Used for investigating internal structures.
The following methods are used:-
1. Laue Photographic method
a) Transmission Method
b) Back-Reflection method
2. Bragg X-ray spectrometer
3. Rotating crystal Method
4. Powder Diffraction Method
48. Laue Photographic Method
The Laue method is mainly used to
determine the orientation of large single
crystals
White radiation is reflected from, or
transmitted through, a fixed crystal
Two Types:-
a. Transmission Method: In the transmission Laue
method, the film is placed behind the crystal to
record beams which are transmitted through the
crystal.
b. Back Reflection Method: In the back-reflection
method, the film is placed between the x-ray
source and the crystal. The beams which are
diffracted in a backward direction are recorded.
49. Transmission method
Main features
i) A is source of x-ray (White
radiation) which is obtained from
a tungsten target at about
60,000V
ii) B is a pinhole collimator. When
X-ray pass through this pinhole
collimator, a fine pencil of x-rays
is obtained. The small is the
diameter the sharper is the
interference
iii) C is a crystal whose internal
structure is to investigated. The
crystal is set on a holder to adjust
its orientation
iv) D is a film arranged on a rigid
base. This film is provided with
beam stop to prevent direct beam
from causing excessive fogging of
the film
50. The position of crystal
is held stationary in a
beam of X-ray
The X-ray after passing
through the crystal are
diffracted and are
recorded on a
photographic plate
Crystal orientation is
determined from the
position of the spots
Each spot can be
indexed, i.e. attributed
to a particular plane,
using special charts
The Leonhardt chart is
used for transmission
patterns.
51. b. Back Reflection Method
Crystal orientation is
determined from the
position of the spots
Each spot can be
indexed, i.e.
attributed to a
particular plane,
using special charts
The Greninger chart
is used for back-
reflection patterns
52. Bragg’s X-Ray Spectrometer Method
X-ray from the anticathode Q
are allowed to pass through
adjustable slit A & allowed to
fall on Crystal C
The position of the crystal can
be adjusted by the vernier
along the circular scale
The reflected rays passes
through slit D and enters the
ionization chamber through
narrow aluminum window
The ionization chamber is
mounted on an arm & its
position is determined by a
second vernier
Each plate of two is connected
to +ve and –ve of battery to
measure the strength of
ionization current
53. Working:
The crystal is mounted in such a position that
θ=0o & ionization chamber adjusted to
receive the X-rays
The crystal and ionization chamber are made
to move in small steps so that the angle
through which the chamber is moved is twice
the angle through which the crystal is rotated
The ionization at first falls but for certain
value of θ it rises sharply & this corresponds
to the direction of x-ray spectrum
54. Measurement of λ
The wavelength of X-ray can be
determined by employing the following
equation
2dsinθ = nλ
The value of θ for various spectra
produced by reflection from a crystal is
measured & the mean value of λ/d is
determined
The value of λ/d is known as lattice
constant
Lattice constant = λ/d
Knowing d, the wavelength λ can be
calculated
55. Measurement of d
The lattice spacing d is connected to cell
edge by the following relation
d = a(√2)/2 for simple lattice
d = a/2 for fcc crystal lattice
d = a(√3)/2 for bcc crystal lattice
Where a can be calculated as
a=[(M*n)/(N*ρ)]1/3
◦ M= Molecular Weight
◦ n= No. of atoms in unit cell
◦ N= Avogadro’s number
◦ Ρ= Density
56. Determination of crystal structure by bragg’s
law:
The X-rays are allowed to fall on the crystal
surface
Then crystal is rotated to reflect from various
lattice planes
Then various ratio of lattice spacing for various
group of spacing is obtained
This ratio has been found to be different for
different crystals
The experimentally observed ratios are compared
with the calculated ratios
(i) d100:d110:d111 = 1:1/√2:1/√3 for simple cubic
lattice
(ii) d100:d110:d111 = 1:1/√2:1/√3 for fcc crystal
(iii) d100:d110:d111 = 1:1/√2:1/√3 for bcc crystal
58. X-rays are generated in the x-ray tube
The beams are made monochromatic by
filter
Monochromatic rays then passes through
collimating system
Xrays then falls on crystal mounted on a
shaft which can be rotated at a uniform
uniform angular ratee by a small motor
When the shaft rotates it satisfies bragg’s
relation which produces spot on
photographic plate
59. Powder crystal Method
Main features
i) A is source of x-ray.
ii) X-ray beam falls on the
powder P through slits S1 & S2
function of this slits is to get
narrow pencil of x-ray.
iii) Fine powder P struck on a hair
by means of gum is suspended
vertically in the axis of
cylindrical camera. This
enables sharp lines to be
obtained on the photographic
film which is surrounded by
powder crystal in form of
circular arc.
iv) The x-rays after falling on the
powder passes out of the
camera through a cut in the
film so as to minimise the
fogging produced by beam.
v) On the flat photographic plate
the observed pattern consist of
traces.
60. Powder crystal Method
THEORY
When a monochromatic beam of x-ray is allowed to
fall on the powder of a crystal, then the following possibilities
may happen…
i) There will be some particles out of the random orientation of
small crystals in fine powder, which lie within a given set of
lattice planes for reflection to occur
ii) While another fraction of a grains will have another set of
planes in the correct position for the reflections to occur and
so on.
iii) Reflections are also possible in the different order of each set.
61. All the like orientations of the grains due
to the reflection for each set of planes &
for each order will constitute a diffraction
cone
Crystal structure can be obtained from the
arrangement of the traces & their relative
traces
If angle of incidence is θ, the angle of
reflection will be 2θ
If the film radius is r, the circumference
2πr corresponds to a scattering angle of
360o
62. Then we can write
l/2πr = 2θ/360
θ = 360l/πr
The value of θ can be calculated from the
equation
substituting this value in Bragg’s equation
the value of d can be calculated
Application:
The method is useful for cubic crystals
Methods is used for determining the complex
structure of metals
This method is useful to make distinction
between the allotropic modification of the
same substance
63. Applications of X-Rays
Structure of crystals
Polymer characterization
Soil classification based on crystallinity
Analysis of industrial dusts
Corrosion products can be studied
Tooth enamel and dentine have been
examined
Degree of crystallinity of a polymer and
sludge
Elucidating the structure of RNA and DNA
Determination of cis and trans isomers
Particle size determination
Crystalline compounds (gall stones) in the
body can be detected
64. REFERENCES
1. Chatwal GR, Anand SK. Instrumental Methods
of Chemical analysis. 5th edition. Himalaya
Publishing house. 2.303-2.339
2. Connolly JR. introduction to X-Ray Powder
Diffrection. Elementary Crystallography for X-
ray, Spring 2012
3. http://en.wikipedia.org/wiki/X-
ray_crystallography
4. http://en.wikipedia.org/wiki/Bragg%27s_law
5. http://www.matter.org.uk/diffraction/x-
ray/laue_method.htm
6. http://www.xtal.iqfr.csic.es/Cristalografia/parte
_06-en.html
7. Gauglitz G, Vo-dinh T. Handbook of
spectroscopy. Wiley-Vch GmbH & Co. publisher
page.360