Talk given on June 22nd to the California Emerging Technology Fund on Calit2's effort in partnership with SDSC to provide technology support for investigating how technology can help respond to wildfires.
UC Capabilities Supporting High-Performance Collaboration and Data-Intensive ...Larry Smarr
07.10.22
University of California Council of Research
UC Irvine
Title: UC Capabilities Supporting High-Performance Collaboration and Data-Intensive Sciences
Irvine, CA
Talk given on June 22nd to the California Emerging Technology Fund on Calit2's effort in partnership with SDSC to provide technology support for investigating how technology can help respond to wildfires.
UC Capabilities Supporting High-Performance Collaboration and Data-Intensive ...Larry Smarr
07.10.22
University of California Council of Research
UC Irvine
Title: UC Capabilities Supporting High-Performance Collaboration and Data-Intensive Sciences
Irvine, CA
Perspectives on Collaborative Research Environments offered by D4ScienceFAO
Slides presented at the "4th Session of the IODE Group of Experts on Biological and Chemical Data Management and Exchange Practices (GE-BICH-IV)" which took place on 27-30 January 2009 in Oostende, Belgium
More information at: http://d4science.eu/node/173
The Groundwater and Storage interactions project arose out of a meeting on the shoulder of the Greenhouse Gas Technologies Conference in Amsterdam in 2010. It was decided to concentrate initially on the Australian Flagships projects. On 3 May 2011 Australian researchers and government agencies met and presented their work to date.
In these slides Mark Webster, Divisional Information Officer, Petroleum and Marine Division,
Geoscience Australia, provides an overview on data sharing within the CCS community
Analyzing Large Earth Data Sets: New Tools from the OptiPuter and LOOKING Pro...Larry Smarr
05.05.03
Presentation to 3rd Annual GEON Meeting
Bahia Resort
Title: Analyzing Large Earth Data Sets: New Tools from the OptiPuter and LOOKING Projects
San Diego, CA
Coupling Australia’s Researchers to the Global Innovation EconomyLarry Smarr
08.10.06
Second Lecture in the
Australian American Leadership Dialogue Scholar Tour
University of Western Australia
Title: Coupling Australia’s Researchers to the Global Innovation Economy
Perth, Australia
Global Telepresence in Support of Global Public HealthLarry Smarr
08.04.17
Briefing
University of California School of Global Health
All Campuses Planning Committee
Calit2@UCSD
Title: Global Telepresence in Support of Global Public Health
La Jolla, CA
12.04.25
Pioneer Session: "N=1: Pioneers of Self-Tracking“
Panel at the Genomes, Environment, and Traits Conference
Harvard Medical School
Title:My N=1 Experience
Cambridge, MA
Coupling Australia’s Researchers to the Global Innovation EconomyLarry Smarr
08.10.08
Fourth Lecture in the
Australian American Leadership Dialogue Scholar Tour
Swinburne University
Title: Coupling Australia’s Researchers to the Global Innovation Economy
Hawthorn, Australia
Perspectives on Collaborative Research Environments offered by D4ScienceFAO
Slides presented at the "4th Session of the IODE Group of Experts on Biological and Chemical Data Management and Exchange Practices (GE-BICH-IV)" which took place on 27-30 January 2009 in Oostende, Belgium
More information at: http://d4science.eu/node/173
The Groundwater and Storage interactions project arose out of a meeting on the shoulder of the Greenhouse Gas Technologies Conference in Amsterdam in 2010. It was decided to concentrate initially on the Australian Flagships projects. On 3 May 2011 Australian researchers and government agencies met and presented their work to date.
In these slides Mark Webster, Divisional Information Officer, Petroleum and Marine Division,
Geoscience Australia, provides an overview on data sharing within the CCS community
Analyzing Large Earth Data Sets: New Tools from the OptiPuter and LOOKING Pro...Larry Smarr
05.05.03
Presentation to 3rd Annual GEON Meeting
Bahia Resort
Title: Analyzing Large Earth Data Sets: New Tools from the OptiPuter and LOOKING Projects
San Diego, CA
Coupling Australia’s Researchers to the Global Innovation EconomyLarry Smarr
08.10.06
Second Lecture in the
Australian American Leadership Dialogue Scholar Tour
University of Western Australia
Title: Coupling Australia’s Researchers to the Global Innovation Economy
Perth, Australia
Global Telepresence in Support of Global Public HealthLarry Smarr
08.04.17
Briefing
University of California School of Global Health
All Campuses Planning Committee
Calit2@UCSD
Title: Global Telepresence in Support of Global Public Health
La Jolla, CA
12.04.25
Pioneer Session: "N=1: Pioneers of Self-Tracking“
Panel at the Genomes, Environment, and Traits Conference
Harvard Medical School
Title:My N=1 Experience
Cambridge, MA
Coupling Australia’s Researchers to the Global Innovation EconomyLarry Smarr
08.10.08
Fourth Lecture in the
Australian American Leadership Dialogue Scholar Tour
Swinburne University
Title: Coupling Australia’s Researchers to the Global Innovation Economy
Hawthorn, Australia
A Campus-Scale High Performance Cyberinfrastructure is Required for Data-Int...Larry Smarr
11.12.12
Seminar Presentation
Princeton Institute for Computational Science and Engineering (PICSciE)
Princeton University
Title: A Campus-Scale High Performance Cyberinfrastructure is Required for Data-Intensive Research
Princeton, NJ
The UC California Institutes for Science and InnovationLarry Smarr
06.04.25
Invited Talk to
Seminar on Creating a Regional Innovation Cluster: From Discovery to Application
Title: The UC California Institutes for Science and Innovation
La Jolla, CA
Science and Cyberinfrastructure in the Data-Dominated EraLarry Smarr
10.02.22
Invited talk
Symposium #1610, How Computational Science Is Tackling the Grand Challenges Facing Science and Society
Title: Science and Cyberinfrastructure in the Data-Dominated Era
San Diego, CA
From the Shared Internet to Personal Lightwaves: How the OptIPuter is Transfo...Larry Smarr
08.04.03
Invited Talk
Cyberinfrastructure Colloquium
Clemson University
Title: From the Shared Internet to Personal Lightwaves: How the OptIPuter is Transforming Scientific Research
Clemson, SC
Applying Photonics to User Needs: The Application ChallengeLarry Smarr
05.02.28
Invited Talk to the 4th Annual On*VECTOR International Photonics Workshop
Sponsored by NTT Network Innovation Laboratories
Title: Applying Photonics to User Needs: The Application Challenge
University of California, San Diego
Monitoring Oceans - Chris Atherton - SRD23SURFevents
In recent years, the integration of fibre optic telecommunication cable monitoring technologies has not been fully achieved, hindering novel applications and research in Earth science. However, recent collaborations among national seismic and oceanographic infrastructures, National Research and Education Networks (NRENs), universities, research institutes, and industry in Europe have developed techniques to monitor the Earth and its systems using submarine optical telecommunication fibres. The SUBMERSE project aims to create a pilot research instrument that can continuously monitor existing submarine fibre optic cables, promoting sustainable development goals and leading to new scientific collaborations. This requires the collaboration of multiple stakeholders both nationally and internationally.
The Pacific Research Platform: A Regional-Scale Big Data Analytics Cyberinfra...Larry Smarr
National Ocean Exploration Forum 2017
Ocean Exploration in a Sea of Data
Calit2’s Qualcomm Institute
University of California, San Diego
October 21, 2017
Toward a Global Interactive Earth Observing CyberinfrastructureLarry Smarr
05.01.12
Invited Talk to the 21st International Conference on Interactive Information Processing Systems (IIPS) for Meteorology, Oceanography, and Hydrology Held at the 85th AMS Annual Meeting
Title: Toward a Global Interactive Earth Observing Cyberinfrastructure
San Diego, CA
LambdaGrids--Earth and Planetary Sciences Driving High Performance Networks a...Larry Smarr
05.02.04
Invited Talk to the NASA Jet Propulsion Laboratory
Title: LambdaGrids--Earth and Planetary Sciences Driving High Performance Networks and High Resolution Visualizations
Pasadena, CA
Cyberinfrastructure to Support Ocean ObservatoriesLarry Smarr
05.03.18
Invited Talk to the Ocean Studies Board
National Research Council
Title: Cyberinfrastructure to Support Ocean Observatories
University of California San Diego
The Academic and R&D Sectors' Current and Future Broadband and Fiber Access N...Larry Smarr
05.02.23
Invited Access Grid Talk
MSCMC FORUM Series
Examining the National Vision for Global Peace and Prosperity
Title: The Academic and R&D Sectors' Current and Future Broadband and Fiber Access Needs for US Global Competitiveness
Arlington, VA
Shrinking the Planet—How Dedicated Optical Networks are Transforming Computat...Larry Smarr
08.08.25
Invited Lecture in the
Frontiers in Computational and Information Sciences Lecture Series at Pacific Northwest National Laboratory
Title: Shrinking the Planet—How Dedicated Optical Networks are Transforming Computational Science and Collaboration
Richland, WA
Making Sense of Information Through Planetary Scale ComputingLarry Smarr
09.03.01
Invited Presentation to the
Diamond Exchange—Brave New World
Title: Making Sense of Information Through Planetary Scale Computing
Monterey, CA
Remote Telepresence for Exploring Virtual WorldsLarry Smarr
08.01.26
Foundational Talk
Virtual World and Immersive Environments
NASA Ames
Title: Remote Telepresence for Exploring Virtual Worlds
Mountain View, CA
Similar to Wildfires, Hydrology, and Microbes: Possible Areas for Collaboration with Calit2 (20)
Removing Uninteresting Bytes in Software FuzzingAftab Hussain
Imagine a world where software fuzzing, the process of mutating bytes in test seeds to uncover hidden and erroneous program behaviors, becomes faster and more effective. A lot depends on the initial seeds, which can significantly dictate the trajectory of a fuzzing campaign, particularly in terms of how long it takes to uncover interesting behaviour in your code. We introduce DIAR, a technique designed to speedup fuzzing campaigns by pinpointing and eliminating those uninteresting bytes in the seeds. Picture this: instead of wasting valuable resources on meaningless mutations in large, bloated seeds, DIAR removes the unnecessary bytes, streamlining the entire process.
In this work, we equipped AFL, a popular fuzzer, with DIAR and examined two critical Linux libraries -- Libxml's xmllint, a tool for parsing xml documents, and Binutil's readelf, an essential debugging and security analysis command-line tool used to display detailed information about ELF (Executable and Linkable Format). Our preliminary results show that AFL+DIAR does not only discover new paths more quickly but also achieves higher coverage overall. This work thus showcases how starting with lean and optimized seeds can lead to faster, more comprehensive fuzzing campaigns -- and DIAR helps you find such seeds.
- These are slides of the talk given at IEEE International Conference on Software Testing Verification and Validation Workshop, ICSTW 2022.
PHP Frameworks: I want to break free (IPC Berlin 2024)Ralf Eggert
In this presentation, we examine the challenges and limitations of relying too heavily on PHP frameworks in web development. We discuss the history of PHP and its frameworks to understand how this dependence has evolved. The focus will be on providing concrete tips and strategies to reduce reliance on these frameworks, based on real-world examples and practical considerations. The goal is to equip developers with the skills and knowledge to create more flexible and future-proof web applications. We'll explore the importance of maintaining autonomy in a rapidly changing tech landscape and how to make informed decisions in PHP development.
This talk is aimed at encouraging a more independent approach to using PHP frameworks, moving towards a more flexible and future-proof approach to PHP development.
GridMate - End to end testing is a critical piece to ensure quality and avoid...ThomasParaiso2
End to end testing is a critical piece to ensure quality and avoid regressions. In this session, we share our journey building an E2E testing pipeline for GridMate components (LWC and Aura) using Cypress, JSForce, FakerJS…
Smart TV Buyer Insights Survey 2024 by 91mobiles.pdf91mobiles
91mobiles recently conducted a Smart TV Buyer Insights Survey in which we asked over 3,000 respondents about the TV they own, aspects they look at on a new TV, and their TV buying preferences.
Observability Concepts EVERY Developer Should Know -- DeveloperWeek Europe.pdfPaige Cruz
Monitoring and observability aren’t traditionally found in software curriculums and many of us cobble this knowledge together from whatever vendor or ecosystem we were first introduced to and whatever is a part of your current company’s observability stack.
While the dev and ops silo continues to crumble….many organizations still relegate monitoring & observability as the purview of ops, infra and SRE teams. This is a mistake - achieving a highly observable system requires collaboration up and down the stack.
I, a former op, would like to extend an invitation to all application developers to join the observability party will share these foundational concepts to build on:
Unlocking Productivity: Leveraging the Potential of Copilot in Microsoft 365, a presentation by Christoforos Vlachos, Senior Solutions Manager – Modern Workplace, Uni Systems
The Art of the Pitch: WordPress Relationships and SalesLaura Byrne
Clients don’t know what they don’t know. What web solutions are right for them? How does WordPress come into the picture? How do you make sure you understand scope and timeline? What do you do if sometime changes?
All these questions and more will be explored as we talk about matching clients’ needs with what your agency offers without pulling teeth or pulling your hair out. Practical tips, and strategies for successful relationship building that leads to closing the deal.
GraphRAG is All You need? LLM & Knowledge GraphGuy Korland
Guy Korland, CEO and Co-founder of FalkorDB, will review two articles on the integration of language models with knowledge graphs.
1. Unifying Large Language Models and Knowledge Graphs: A Roadmap.
https://arxiv.org/abs/2306.08302
2. Microsoft Research's GraphRAG paper and a review paper on various uses of knowledge graphs:
https://www.microsoft.com/en-us/research/blog/graphrag-unlocking-llm-discovery-on-narrative-private-data/
GraphSummit Singapore | The Future of Agility: Supercharging Digital Transfor...Neo4j
Leonard Jayamohan, Partner & Generative AI Lead, Deloitte
This keynote will reveal how Deloitte leverages Neo4j’s graph power for groundbreaking digital twin solutions, achieving a staggering 100x performance boost. Discover the essential role knowledge graphs play in successful generative AI implementations. Plus, get an exclusive look at an innovative Neo4j + Generative AI solution Deloitte is developing in-house.
Why You Should Replace Windows 11 with Nitrux Linux 3.5.0 for enhanced perfor...SOFTTECHHUB
The choice of an operating system plays a pivotal role in shaping our computing experience. For decades, Microsoft's Windows has dominated the market, offering a familiar and widely adopted platform for personal and professional use. However, as technological advancements continue to push the boundaries of innovation, alternative operating systems have emerged, challenging the status quo and offering users a fresh perspective on computing.
One such alternative that has garnered significant attention and acclaim is Nitrux Linux 3.5.0, a sleek, powerful, and user-friendly Linux distribution that promises to redefine the way we interact with our devices. With its focus on performance, security, and customization, Nitrux Linux presents a compelling case for those seeking to break free from the constraints of proprietary software and embrace the freedom and flexibility of open-source computing.
Generative AI Deep Dive: Advancing from Proof of Concept to ProductionAggregage
Join Maher Hanafi, VP of Engineering at Betterworks, in this new session where he'll share a practical framework to transform Gen AI prototypes into impactful products! He'll delve into the complexities of data collection and management, model selection and optimization, and ensuring security, scalability, and responsible use.
Climate Impact of Software Testing at Nordic Testing DaysKari Kakkonen
My slides at Nordic Testing Days 6.6.2024
Climate impact / sustainability of software testing discussed on the talk. ICT and testing must carry their part of global responsibility to help with the climat warming. We can minimize the carbon footprint but we can also have a carbon handprint, a positive impact on the climate. Quality characteristics can be added with sustainability, and then measured continuously. Test environments can be used less, and in smaller scale and on demand. Test techniques can be used in optimizing or minimizing number of tests. Test automation can be used to speed up testing.
Encryption in Microsoft 365 - ExpertsLive Netherlands 2024Albert Hoitingh
In this session I delve into the encryption technology used in Microsoft 365 and Microsoft Purview. Including the concepts of Customer Key and Double Key Encryption.
Threats to mobile devices are more prevalent and increasing in scope and complexity. Users of mobile devices desire to take full advantage of the features
available on those devices, but many of the features provide convenience and capability but sacrifice security. This best practices guide outlines steps the users can take to better protect personal devices and information.
SAP Sapphire 2024 - ASUG301 building better apps with SAP Fiori.pdfPeter Spielvogel
Building better applications for business users with SAP Fiori.
• What is SAP Fiori and why it matters to you
• How a better user experience drives measurable business benefits
• How to get started with SAP Fiori today
• How SAP Fiori elements accelerates application development
• How SAP Build Code includes SAP Fiori tools and other generative artificial intelligence capabilities
• How SAP Fiori paves the way for using AI in SAP apps
SAP Sapphire 2024 - ASUG301 building better apps with SAP Fiori.pdf
Wildfires, Hydrology, and Microbes: Possible Areas for Collaboration with Calit2
1. Wildfires, Hydrology, and Microbes:
Possible Areas for Collaboration with Calit2
Invited Speaker
Desert Research Institute
Reno, Nevada
November 16, 2007
Dr. Larry Smarr
Director, California Institute for Telecommunications and
Information Technology
Harry E. Gruber Professor,
Dept. of Computer Science and Engineering
Jacobs School of Engineering, UCSD
2. Two New Calit2 Buildings Provide
New Laboratories for “Living in the Future”
• “Convergence” Laboratory Facilities
– Nanotech, BioMEMS, Chips, Radio, Photonics
– Virtual Reality, Digital Cinema, HDTV, Gaming
• Over 1000 Researchers in Two Buildings
– Linked via Dedicated Optical Networks
UC Irvine
www.calit2.net
Preparing for a World in Which
Distance is Eliminated…
3. ROADnet and HiSeasNet are Prototypes of
the Future of In Situ Earth Observing Systems
http://roadnet.ucsd.edu
5. The OptIPuter Project – Creating High Resolution Portals
Over Dedicated Optical Channels to Global Science Data
• NSF Large Information Technology Research Proposal
– Calit2 (UCSD, UCI) and UIC Lead Campuses—Larry Smarr PI
– Partnering Campuses: SDSC, USC, SDSU, NCSA, NW, TA&M, UvA,
SARA, NASA Goddard, KISTI, AIST, CRC(Canada), CICESE (Mexico)
• Engaged Industrial Partners:
– IBM, Sun, Telcordia, Chiaro, Calient, Glimmerglass, Lucent
• $13.5 Million Over Five Years—Now In the Six and Final Year
NIH Biomedical Informatics
Research Network NSF EarthScope and ORION
6. Using Advanced Info Tech and Telecommunications
to Accelerate Response to Wildfires
Early on October 23, 2007, Harris Fire San Diego
Photo by Bill Clayton, http://map.sdsu.edu/
7. Calit2 Added Live Feeds From HPWREN Cameras to
KPBS Google Map
www.calit2.net/newsroom/release.php?id=1194
8. HPWREN Time Lapse Photography of
October 2007 San Diego Harris Fire From Lyons Peak
Four HWPWREN Cameras on Oct 24, 2007,
from Midnight to Noon.
The Four Different Frames, from Left to Right,
Represent Cameras from the North, East, South, and West,
Respectively. These Data were Provided by HPWREN,
Led by Principal Investigator Hans-Werner Braun at SDSC
Movie Created by Kerry Key and Frank Vernon, SIO
9. NASA’s Aqua Satellite’s MODIS Instrument Provided
“Situational Awareness” of the 14 SoCal Fires
Calit2, SDSU, and NASA Goddard Used NASA Prioritization and OptIPuter Links
to Cut time to Receive Images from 24 to 3 Hours
October 22, 2007
Moderate Resolution Imaging Spectroradiometer (MODIS)
NASA/MODIS Rapid Response
www.nasa.gov/vision/earth/lookingatearth/socal_wildfires_oct07.html
10. SDSU’s San Diego GIS Force Group of Volunteers
Geo-Referenced MODIS Data and Distributed Over Web
“We apologize for the slow
server performance in the first
two days of the wildfires (Oct.
21 & 22) due to overloaded
requests from Web users.
Tuesday we were given access
to major Intel computers at
Calit2 at UCSD and special
connectivity between SDSU
and UCSD (OptIPuter) from
which this page is now being
served (special thanks to John
Graham, Eric Frost, Larry
Smarr, John DeNune, and
Cristiano). It is super fast now.”
October 23, 2007
-- SDSU Department of
Geography, Oct. 25, 11:00am.
Site organized by Dr. Ming-Hsiang Tsou, SDSU
http://map.sdsu.edu/
11. MODIS Images Provide Targeting Information to
NASA's EO-1 Satellite Which Cuts Through Smoke
Composite of the Three of the
Red, Blue, and Green Channels Shortwave Infrared Channels
October 23, 2007 Witch Wildfire south of Escondido, California
EO-1’s Hyperion Spectrometer Observes 220 Contiguous Wavelengths
From Visible Light To Shortwave Infrared
NASA/EO-1 Team
www.nasa.gov/vision/earth/lookingatearth/socal_wildfires_oct07.html
12. Unmanned Aircraft Provided
Near Real-Time SoCal Fire Images October 2007
www.nasa.gov/centers/dryden/news/Features/2007/wildfire_socal_10_07.html Flight Plan and Ikhana Data
Displayed in San Diego
Emergency Operations
Center's Situation Room
Pilot Flies Predator B from
NASA Dryden in Edwards AF Base NASA Ames Overlaid
Thermal-Infrared Images
on Google Earth Maps,
Transmitted in
Near-Real Time to the
Interagency Fire Center
in Boise, Idaho
NASA Ikhana Carrying Autonomous
Modular Scanner on 8 Hour Flight,
Coordinated with the FAA,
Downlinks to NASA Ames
13. Prototyping Future Knowledge Integration Center for
Emergency Response
Where are the fires? Where are they going?
NASA MODIS showing regional smoke
NEXRAD near real-time radar of smoke Prof. Eric
Frost –
SDSU Viz
Imagery, Sensors, Videoconferencing Center Co-
Director
Across the Border---Shared View with Mexico
US Assets Shared via Network
http://citi.sdsu.edu/
14. FIRESNet: Fire Informatics and
Realtime Environmental Sensor Network
• Wireless System Angora Ridge fire
– Local (30 Mb/s) June 25, 2007
– Back to UC Riverside
– Over CENIC to others
• Sensors Include:
– High-Res Cameras
– All Visible
– Some IR
– Met-Stations
– Particulate Sensors
– Seismometers
Proposal Under review:
UCSD, VCR, UCD
Source:
Graham Kent,
SIO, UCSD
15. My OptIPortalTM – Affordable
Termination Device for the OptIPuter Global Backplane
• 20 Dual CPU Nodes, 20 24” Monitors, ~$50,000
• 1/4 Teraflop, 5 Terabyte Storage, 45 Mega Pixels--Nice PC!
• Scalable Adaptive Graphics Environment ( SAGE) Jason Leigh, EVL-UIC
Source: Phil Papadopoulos SDSC, Calit2
17. The CoreWall Project
• The CoreWall Project develops tools for collaborative real-time core
description, stratigraphic correlation, and data visualization to be used by
the marine, terrestrial and Antarctic science communities.
• Main Institutions: U. Minnesota (LacCore- Laccustrine Core Repository), U.
Illinois Chicago (EVL), Columbia U. (LDEO- Lamont-Doherty Earth
Observatory), U. Colorado (INSTAAR- Institute of Artic and Alpine Research)
• Partners: Integrated Ocean Drilling Program, Antarctic Drilling Program
(ANDRILL), CHRONOS
• NSF OCE 0602117
• www.corewall.org
18. Fall 2006
CoreWall Deployed at McMurdo Station, Antarctica
ANDRILL. McMurdo stations, Antarctica
www.apple.com/science/profiles/andrill/
19. The New Science of Metagenomics
“The emerging field
NRC Report: of metagenomics,
where the DNA of entire
Metagenomic communities of microbes
data should is studied simultaneously,
be made presents the greatest opportunity
publicly -- perhaps since the invention of
available in the microscope –
international to revolutionize understanding of
archives as the microbial world.” –
rapidly as
possible. National Research Council
March 27, 2007
20. Marine Genome Sequencing Project –
Measuring the Genetic Diversity of Ocean Microbes
Need
Ocean Data
Sorcerer II Data Will Double
Number of Proteins in GenBank!
21. Enormous Increase in Scale of Known Genes
Over Last Decade
1995 2007
First Microbe Genome Ocean Microbial Metagenomics
1.8 Million Bases 6.3 Billion Bases
1749 Genes 5.6 Million Genes
~3300x
22. Moore Foundation Funded the Venter Institute to Provide
the Full Genome Sequence of 155+ Marine Microbes
Phylogenetic Trees Created
by Uli Stingl, Oregon State
Blue Means Contains
One of the Moore 155 Genomes
www.moore.org/microgenome/trees.aspx
23. Calit2 Community Cyberinfrastructure for Advanced
Marine Microbial Ecology Research and Analysis (CAMERA)
Compute and Storage Complex
512 Processors
~5 Teraflops
~ 200 Terabytes Storage
Source: Phil Papadopoulos, SDSC, Calit2
24. Calit2’s Direct Access Core Architecture
Will Create Next Generation Metagenomics Server
Sargasso Sea Data
Sorcerer II Expedition Dedicated
(GOS) Compute Farm Traditional
User
(1000s of CPUs)
JGI Community
W E B PORTAL
Sequencing Project
+ Web Services
Moore Marine Data- Request
10 GigE
Microbial Project Base Fabric Response
Farm
NASA and NOAA
Local
Satellite Data
Environment
Flat File
Community Microbial Direct
Server Web
Metagenomics Data Access
Farm Lambda (other service)
Cnxns
Local
Cluster
TeraGrid: Cyberinfrastructure Backplane
(scheduled activities, e.g. all by all comparison)
(10,000s of CPUs)
Source: Phil Papadopoulos, SDSC, Calit2
26. “Instant” Global Microbial Metagenomics
CyberCommunity
Over 1300 Registered Users From 48 Countries
USA 761
United Kingdom 64
Germany 54
Canada 46
France 44
Brazil 33
27. Use of Tiled Display Wall OptIPortal
to Interactively View Microbial Genome
Acidobacteria bacterium Ellin345
Soil Bacterium 5.6 Mb
28. Use of Tiled Display Wall OptIPortal
to Interactively View Microbial Genome
Source: Raj Singh, UCSD
29. Use of Tiled Display Wall OptIPortal
to Interactively View Microbial Genome
Source: Raj Singh, UCSD
31. An Emerging High Performance Collaboratory
for Microbial Metagenomics
UW
OptIPortals
UMich
UIC EVL
MIT
UC Davis
JCVI
UCI
SIO UCSD
SDSU OptIPortal
CICESE
32. New Genome Wall at UWashington
Chromosomes of Marine Diatom Thallasiosira Pseudonanna
Source: Ginger Armbrust, UW
33. e-Science Collaboratory Without Walls
Enabled by iHDTV Uncompressed HD Telepresence
1500 Mbits/sec Calit2 to UW Research Channel Over NLR
May 23, 2007
John Delaney, PI LOOKING, Neptune
Photo: Harry Ammons, SDSC
34. Embedded iHDTV in an OptIPortal
Enables Collaboration
Photo: Maxine Brown, EVL
Larry Smarr in Reno Source: Michael Wellings Ginger Armbrust in Seattle
Research Channel
Univ. Washington
36. LambdaTable Can Be Customized
for Interactive Museum Learning
Source: EVL, UIC
37. 3D OptIPortals: Calit2 StarCAVE and Varrier
Alpha Tests of Telepresence “Holodecks”
Connected at 160 Gb/s Source: Tom DeFanti, Greg Dawe, Calit2
30 HD
Projectors!
60 GB Texture Memory,
Renders Images 3,200 Times the Speed of Single PC
39. How Do You Get From Your Lab
to the National LambdaRail?
“Research is being stalled by ‘information overload,’ Mr. Bement said, because
data from digital instruments are piling up far faster than researchers can
study. In particular, he said, campus networks need to be improved. High-speed
data lines crossing the nation are the equivalent of six-lane superhighways, he
said. But networks at colleges and universities are not so capable. “Those
massive conduits are reduced to two-lane roads at most college and university
campuses,” he said. Improving cyberinfrastructure, he said, “will transform the
capabilities of campus-based scientists.”
-- Arden Bement, the director of the National Science Foundation
www.ctwatch.org
41. California (CENIC)
Network Directions
• More Bandwidth to Research University Campuses
– One or Two 10GE Connections to Every Campus
• More Bandwidth on the Backbone
– 40Gbps Or 100Gbps
• Support for New Protocols and Features
– IPv6 Multicast
– Jumbo Frames: 9000 (or More) Bytes
• “Hybrid Network” Design, Incorporating
Traditional Routed IP Service and
the New Frame and Optical Circuit Services:
– “HPRng-L3” = Routed IP Network
– “HPRng-L2” = Switched Ethernet Network
– “HPRng-L1” = Switched Optical Network CalREN-XD
Source: Jim Dolgonas, CENIC
43. Current UCSD Experimental Optical Core:
Ready to Couple to CENIC L1, L2, L3 Services
Goals by 2008:
CENIC L1, L2
>= 50 endpoints at 10 GigE Services
>= 32 Packet switched
>= 32 Switched wavelengths
Lucent
>= 300 Connected endpoints
Glimmerglass
Approximately 0.5 TBit/s
Arrive at the “Optical” Center
of Campus
Switching will be a Hybrid
Combination of:
Packet, Lambda, Circuit --
Force10
OOO and Packet Switches
Already in Place
Funded by
NSF MRI
Grant
Cisco 6509
OptIPuter Border Router
Source: Phil Papadopoulos, SDSC/Calit2
(Quartzite PI, OptIPuter co-PI)
44. UCSD Planned Optical Networked
Biomedical Researchers and Instruments
• Connects at 10 Gbps :
CryoElectron
Microscopy Facility – Microarrays
San Diego – Genome Sequencers
Supercomputer – Mass Spectrometry
Center
– Light and Electron
Microscopes
– Whole Body Imagers
– Computing
– Storage
Cellular & Molecular
Medicine East
Calit2@UCSD
Bioengineering
Radiology
Imaging Lab
National
Center for
Microscopy &
Imaging Center for
Molecular Genetics
Pharmaceutical
Sciences Building Cellular & Molecular
Medicine West
Biomedical Research
45. Planned UCSD Production Campus Cyberinfrastructure
Supporting Data Intensive Biomedical Research
Active Data Replication
N x 10 Gbit
Nx Eco-Friendly
10
Gb G bit Storage and
it 0
N x1 Compute
“Network in a box” Wide-Area 10G
• > 200 Connections 10 Gigabit • CENIC/HPRng
• DWDM or Gray Optics L2/L3 • NLR Cavewave
On-Demand Switch • I2 NewNet
Sing • Cinegrid
Physical le 1
0 Gb •…
Connections it
Your
Lab
Here
Microarray
Source: Phil Papadopoulos, SDSC/Calit2;
Elazar Harel, UCSD
46. Calit2/SDSC Proposal to Create a UC Cyberinfrastructure
of OptIPuter “On-Ramps” to TeraGrid Resources
OptIPuter + CalREN-XD + TeraGrid =
“OptiGrid”
UC Davis
UC Berkeley
UC San Francisco
UC Merced
UC Santa Cruz
UC Los Angeles
UC Santa Barbara UC Riverside
UC Irvine
Creating a Critical Mass of End Users
UC San Diego on a Secure LambdaGrid
Source: Fran Berman, SDSC , Larry Smarr, Calit2