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Emerging Trends IEEE Spectrum Editorial Board New York, NY June 29, 2007 Dr. Larry Smarr Director, California Institute for Telecommunications and Information Technology Harry E. Gruber Professor,  Dept. of Computer Science and Engineering Jacobs School of Engineering, UCSD
Accelerator: The Perfect Storm--   Convergence of Engineering with Bio, Physics, & IT 2 mm HP  MemorySpot Nanobio info technology 1000x  Magnification MEMS 2 micron DNA-Conjugated Microbeads Human Adenovirus 400x  Magnification NANO IBM Quantum Corral Iron Atoms on Copper 5 nanometers 400,000 x !
The Intersection of Solid State and  Biological Information Systems Snail neuron grown on a CMOS chip with 128x128 Transistors.  The electrical activity of the neuron is recorded by the chip.  (Chip fabricated by Infineon Technologies) www.biochem.mpg.de/en/research/rd/fromherz/publications/03eve/index.html
Lifechips--Merging Two Major Industries:  Microelectronic Chips & Life Sciences LifeChips:  the merging of two major industries, the microelectronic chip industry with the life science industry LifeChips medical devices 65 UCI Faculty
Nano-Structured Porous Silicon Applied to Cancer Treatment Michael J. Sailor Research Group Chemistry and Biochemistry Nanostructured “Mother Ships”  for Delivery of Cancer Therapeutics Nanodevices for In-vivo Detection & Treatment of Cancerous Tumors
A World of Distributed Sensors Starts  with Integrated Nanosensors Ivan Schuller holding the first prototype in 2004  I. K. Schuller, A. Kummel, M. Sailor, W. Trogler, Y-H Lo Developing Multiple Nanosensors  on a Single Chip,  Integrated with Local Processing  and Wireless Communications Technology Transfer: RedX (Explosive Sensors), RheVision (Fauvation Optics) 2006 45 Faculty with Nano Projects at Calit2@UCSD Guided wave optics Aqueous bio/chem sensors   Fluidic circuit Free space optics Physical sensors Gas/chemical sensors Electronics (communication, powering)
Real-Time Electronic Readout from  Single Biomolecule Sensors ,[object Object],[object Object],[object Object],[object Object],Source: Phil Collins & Greg Weiss, Calit2@UCI 1 nm wiring 1 protein molecule …  and without device in buffer with reagents Schematic & SEM Image of Carbon Nanotube-based Device 40 Nano Projects at Calit2@UCI
Building a Genome-Scale Model  of E. Coli  in Silico ,[object Object],[object Object],[object Object],Source:  Bernhard Palsson UCSD Genetic Circuits Research Group http://gcrg.ucsd.edu JTB 2002 JBC 2002 ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Information Theorists Working with Bio, IT, and Nano Researchers Will Radically Transform Our View of Living Systems "Through the strong loupe of information theory,  we will be able to watch  how such [living] beings  do what nonliving systems cannot do:  extract information from  their surrounds,  store it in a stable molecular form,  and eventually parcel it out  for their creative endeavors.  ... So viewed, the information circle becomes the unit of life.” --Werner Loewenstein The Touchstone of Life (1999) Calit2’s Information Theory  and Applications  Center http://ita.ucsd.edu
President Kalam of India Believes Nanobioinfotech  is the Future for 600,000 Villages ,[object Object],[object Object],[object Object],[object Object],Photo:  Alan Decker, UCSD
[object Object],[object Object],[object Object],The University Research World Is Connecting  with Dedicated 10Gbps Light Paths T   H   E  G   L   O   B   A   L  L   A   M   B   D   A  I   N   T   E   G   R   A   T   E   D  F   A   C   I   L   I   T   Y   Maxine Brown, Tom DeFanti, Co-Chairs www.igrid2005.org 50 Demonstrations, 20 Counties, 10 Gbps/Demo i Grid  2005
First Trans-Pacific Super High Definition Telepresence Meeting Using Digital Cinema 4k Streams Lays Technical Basis for Global Digital Cinema Sony  NTT  SGI Streaming 4k  with JPEG 2000 Compression  ½ gigabit/sec Talk by Laurin Herr 100 Times  the Resolution  of YouTube! Keio University  President Anzai UCSD  Chancellor Fox
Beyond 4k –  From 8 Megapixels Towards a Billion Megapixels Calit2@UCI Apple Tiled Display Wall Driven by 25 Dual-Processor G5s 50 Apple 30” Cinema Displays Source: Falko Kuester, Calit2@UCI NSF Infrastructure Grant Data—One Foot Resolution  USGS Images of La Jolla, CA HDTV Digital Cameras Digital Cinema
The OptIPuter Project: Creating High Resolution Portals  Over Dedicated Optical Channels to Global Science Data Picture Source: Mark Ellisman, David Lee, Jason Leigh Calit2 (UCSD, UCI) and UIC Lead Campuses—Larry Smarr PI Univ. Partners: SDSC, USC, SDSU, NW, TA&M, UvA, SARA, KISTI, AIST Industry: IBM, Sun, Telcordia, Chiaro, Calient, Glimmerglass, Lucent $13.5M Over Five Years Scalable Adaptive Graphics Environment (SAGE)
Broadband Depends on Where You Are ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],100,000 Fold Range  All Here Today! “ The future is already here,  it’s just not evenly distributed” William Gibson,  Author of Neuromancer
Marine Genome Sequencing Project –  Measuring the Genetic Diversity of Ocean Microbes Sorcerer II Data Will Double Number of Proteins in GenBank! Specify  Ocean Data  Each Sample ~2000 Microbial Species
Use of OptIPortal  to Interactively View Microbial Genome Source:  Raj Singh, UCSD Acidobacteria bacterium Ellin345 (NCBI) Soil Bacterium 5.6 Mb 15,000 x 15,000 Pixels
Use of OptIPortal  to Interactively View Microbial Genome Source:  Raj Singh, UCSD Acidobacteria bacterium Ellin345 (NCBI) Soil Bacterium 5.6 Mb 15,000 x 15,000 Pixels
Use of OptIPortal  to Interactively View Microbial Genome Source:  Raj Singh, UCSD Acidobacteria bacterium Ellin345 (NCBI) Soil Bacterium 5.6 Mb 15,000 x 15,000 Pixels
An Emerging High Performance Collaboratory for Microbial Metagenomics  NW! CICESE UW JCVI MIT SIO UCSD SDSU UIC EVL UCI OptIPortals OptIPortal UC Davis UMich
e-Science Collaboratory Without Walls  Enabled by Uncompressed HD Telepresence Photo: Harry Ammons, SDSC John Delaney, PI LOOKING, Neptune May 23, 2007 1500 Mbits/sec Calit2 to UW Research Channel Over NLR
3D OptIPortal Calit2 StarCAVE  Telepresence “Holodeck” 60 GB Texture Memory,  Renders Images 3,200 Times the Speed of  Single PC  Source: Tom DeFanti, Greg Dawe, Calit2 Connected at 200 Gb/s 30 HD  Projectors!
Can We Create a “My Space” for Science Researchers?  Microbial Metagenomics as a Cyber Community Over 1000 Registered Users From 45 Countries

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Emerging Trends

  • 1. Emerging Trends IEEE Spectrum Editorial Board New York, NY June 29, 2007 Dr. Larry Smarr Director, California Institute for Telecommunications and Information Technology Harry E. Gruber Professor, Dept. of Computer Science and Engineering Jacobs School of Engineering, UCSD
  • 2. Accelerator: The Perfect Storm-- Convergence of Engineering with Bio, Physics, & IT 2 mm HP MemorySpot Nanobio info technology 1000x Magnification MEMS 2 micron DNA-Conjugated Microbeads Human Adenovirus 400x Magnification NANO IBM Quantum Corral Iron Atoms on Copper 5 nanometers 400,000 x !
  • 3. The Intersection of Solid State and Biological Information Systems Snail neuron grown on a CMOS chip with 128x128 Transistors. The electrical activity of the neuron is recorded by the chip. (Chip fabricated by Infineon Technologies) www.biochem.mpg.de/en/research/rd/fromherz/publications/03eve/index.html
  • 4. Lifechips--Merging Two Major Industries: Microelectronic Chips & Life Sciences LifeChips: the merging of two major industries, the microelectronic chip industry with the life science industry LifeChips medical devices 65 UCI Faculty
  • 5. Nano-Structured Porous Silicon Applied to Cancer Treatment Michael J. Sailor Research Group Chemistry and Biochemistry Nanostructured “Mother Ships” for Delivery of Cancer Therapeutics Nanodevices for In-vivo Detection & Treatment of Cancerous Tumors
  • 6. A World of Distributed Sensors Starts with Integrated Nanosensors Ivan Schuller holding the first prototype in 2004 I. K. Schuller, A. Kummel, M. Sailor, W. Trogler, Y-H Lo Developing Multiple Nanosensors on a Single Chip, Integrated with Local Processing and Wireless Communications Technology Transfer: RedX (Explosive Sensors), RheVision (Fauvation Optics) 2006 45 Faculty with Nano Projects at Calit2@UCSD Guided wave optics Aqueous bio/chem sensors Fluidic circuit Free space optics Physical sensors Gas/chemical sensors Electronics (communication, powering)
  • 7.
  • 8.
  • 9. Information Theorists Working with Bio, IT, and Nano Researchers Will Radically Transform Our View of Living Systems "Through the strong loupe of information theory, we will be able to watch how such [living] beings do what nonliving systems cannot do: extract information from their surrounds, store it in a stable molecular form, and eventually parcel it out for their creative endeavors. ... So viewed, the information circle becomes the unit of life.” --Werner Loewenstein The Touchstone of Life (1999) Calit2’s Information Theory and Applications Center http://ita.ucsd.edu
  • 10.
  • 11.
  • 12. First Trans-Pacific Super High Definition Telepresence Meeting Using Digital Cinema 4k Streams Lays Technical Basis for Global Digital Cinema Sony NTT SGI Streaming 4k with JPEG 2000 Compression ½ gigabit/sec Talk by Laurin Herr 100 Times the Resolution of YouTube! Keio University President Anzai UCSD Chancellor Fox
  • 13. Beyond 4k – From 8 Megapixels Towards a Billion Megapixels Calit2@UCI Apple Tiled Display Wall Driven by 25 Dual-Processor G5s 50 Apple 30” Cinema Displays Source: Falko Kuester, Calit2@UCI NSF Infrastructure Grant Data—One Foot Resolution USGS Images of La Jolla, CA HDTV Digital Cameras Digital Cinema
  • 14. The OptIPuter Project: Creating High Resolution Portals Over Dedicated Optical Channels to Global Science Data Picture Source: Mark Ellisman, David Lee, Jason Leigh Calit2 (UCSD, UCI) and UIC Lead Campuses—Larry Smarr PI Univ. Partners: SDSC, USC, SDSU, NW, TA&M, UvA, SARA, KISTI, AIST Industry: IBM, Sun, Telcordia, Chiaro, Calient, Glimmerglass, Lucent $13.5M Over Five Years Scalable Adaptive Graphics Environment (SAGE)
  • 15.
  • 16. Marine Genome Sequencing Project – Measuring the Genetic Diversity of Ocean Microbes Sorcerer II Data Will Double Number of Proteins in GenBank! Specify Ocean Data Each Sample ~2000 Microbial Species
  • 17. Use of OptIPortal to Interactively View Microbial Genome Source: Raj Singh, UCSD Acidobacteria bacterium Ellin345 (NCBI) Soil Bacterium 5.6 Mb 15,000 x 15,000 Pixels
  • 18. Use of OptIPortal to Interactively View Microbial Genome Source: Raj Singh, UCSD Acidobacteria bacterium Ellin345 (NCBI) Soil Bacterium 5.6 Mb 15,000 x 15,000 Pixels
  • 19. Use of OptIPortal to Interactively View Microbial Genome Source: Raj Singh, UCSD Acidobacteria bacterium Ellin345 (NCBI) Soil Bacterium 5.6 Mb 15,000 x 15,000 Pixels
  • 20. An Emerging High Performance Collaboratory for Microbial Metagenomics NW! CICESE UW JCVI MIT SIO UCSD SDSU UIC EVL UCI OptIPortals OptIPortal UC Davis UMich
  • 21. e-Science Collaboratory Without Walls Enabled by Uncompressed HD Telepresence Photo: Harry Ammons, SDSC John Delaney, PI LOOKING, Neptune May 23, 2007 1500 Mbits/sec Calit2 to UW Research Channel Over NLR
  • 22. 3D OptIPortal Calit2 StarCAVE Telepresence “Holodeck” 60 GB Texture Memory, Renders Images 3,200 Times the Speed of Single PC Source: Tom DeFanti, Greg Dawe, Calit2 Connected at 200 Gb/s 30 HD Projectors!
  • 23. Can We Create a “My Space” for Science Researchers? Microbial Metagenomics as a Cyber Community Over 1000 Registered Users From 45 Countries