This document discusses the C-Value Paradox, which is the observation that there is no correlation between the complexity of an organism and the amount of DNA (C-value) in its genome. The document provides examples showing that C-values, or the amount of DNA per haploid cell, can vary widely both within and across species, from 105 base pairs in mycoplasma to over 109 base pairs in mammals. While complexity tends to increase with higher C-values, exceptions exist, demonstrating there is no direct linear relationship between genome size and organism complexity. The term "C-value" refers to the haploid DNA content of a species.
This Presentation will be helpful to undergraduate and postgraduate students of biology and biotechnology in understanding the significance of COT curves in determination of gene and genome complexity amoug various organisms
C VALUE, C VALUE PARADOX , COT CURVE ANALYSIS.pptxMurugaveni B
ย
This document discusses the C-value, C-value paradox, and COT curve analysis. It defines the C-value as the total amount of DNA in a genome. It explains that the C-value paradox arose because early research assumed complexity increased with DNA amount, but some organisms like salamanders have more DNA than humans despite lower complexity. The document outlines the COT curve technique which analyzes renaturation kinetics to measure genome complexity based on repetitive sequences. It applies COT curve analysis to understand genome size, sequence complexity, and the proportion of single-copy versus repetitive DNA.
The document discusses DNA methylation, repetitive DNA sequences, the C-value paradox, and their relationships. It provides background on DNA methylation, how it regulates gene expression and is involved in diseases. It describes highly repetitive and satellite DNA sequences. It explains that the C-value paradox stemmed from the observation that genome size did not correlate with complexity, but this was later resolved by discovering non-coding DNA. The paradox questioned how genome size related to gene number.
Genome size and complexity of eukaryotic genome.pptxAryaKrishnan49
ย
The document discusses key aspects of genes, genomes, and genetic complexity. It defines genes as segments of DNA that determine characteristics and encode proteins. A genome is the full set of genetic material, including both coding and non-coding sequences. While genome size generally increases with complexity, there is not always a direct correlation, known as the C-value paradox. Eukaryotic genomes are more complex than prokaryotes due to large amounts of non-coding introns, repetitive sequences, and multiple gene copies. Only a small fraction of the human genome encodes proteins.
This document discusses the C-Value Paradox, which is the observation that there is no correlation between the complexity of an organism and the amount of DNA (C-value) in its genome. The document provides examples showing that C-values, or the amount of DNA per haploid cell, can vary widely both within and across species, from 105 base pairs in mycoplasma to over 109 base pairs in mammals. While complexity tends to increase with higher C-values, exceptions exist, demonstrating there is no direct linear relationship between genome size and organism complexity. The term "C-value" refers to the haploid DNA content of a species.
This Presentation will be helpful to undergraduate and postgraduate students of biology and biotechnology in understanding the significance of COT curves in determination of gene and genome complexity amoug various organisms
C VALUE, C VALUE PARADOX , COT CURVE ANALYSIS.pptxMurugaveni B
ย
This document discusses the C-value, C-value paradox, and COT curve analysis. It defines the C-value as the total amount of DNA in a genome. It explains that the C-value paradox arose because early research assumed complexity increased with DNA amount, but some organisms like salamanders have more DNA than humans despite lower complexity. The document outlines the COT curve technique which analyzes renaturation kinetics to measure genome complexity based on repetitive sequences. It applies COT curve analysis to understand genome size, sequence complexity, and the proportion of single-copy versus repetitive DNA.
The document discusses DNA methylation, repetitive DNA sequences, the C-value paradox, and their relationships. It provides background on DNA methylation, how it regulates gene expression and is involved in diseases. It describes highly repetitive and satellite DNA sequences. It explains that the C-value paradox stemmed from the observation that genome size did not correlate with complexity, but this was later resolved by discovering non-coding DNA. The paradox questioned how genome size related to gene number.
Genome size and complexity of eukaryotic genome.pptxAryaKrishnan49
ย
The document discusses key aspects of genes, genomes, and genetic complexity. It defines genes as segments of DNA that determine characteristics and encode proteins. A genome is the full set of genetic material, including both coding and non-coding sequences. While genome size generally increases with complexity, there is not always a direct correlation, known as the C-value paradox. Eukaryotic genomes are more complex than prokaryotes due to large amounts of non-coding introns, repetitive sequences, and multiple gene copies. Only a small fraction of the human genome encodes proteins.
The document discusses different types of genomes, including viral, bacterial, plant, and animal genomes. It provides details on the structure and size of these genomes. Some key points include:
- A genome is the complete set of DNA or RNA in an organism, including all its genes. It provides all the information needed to build and maintain the organism.
- Viral genomes can be single or double-stranded DNA or RNA and range in size from 2kb to 2500kb. Bacterial genomes are generally smaller than eukaryotic genomes, ranging from 130kb to 14Mbp.
- Plant genomes can vary greatly in size from 15Mbp in green algae to much larger and complex genomes in
Dna content,c value paradox, euchromatin heterochromatin, banding patternArchanaSoni3
ย
DNA content refers to the amount of DNA in an organism's haploid chromosomes. It varies greatly between organisms, with eukaryotes generally having more DNA than prokaryotes. The amount of DNA does not always correlate with an organism's complexity, known as the C-value paradox. This is because eukaryotic DNA contains large amounts of non-coding repetitive sequences. Chromatin exists in two forms - euchromatin, which is less condensed and permits gene expression, and heterochromatin, which is highly condensed and usually silences genes. Heterochromatin forms in specific regions like centromeres and telomeres and is important for chromosome function and stability.
A complete set of chromosomes/genes inherited as a unit from one parent called genome. The entire genetic complement of a living organism.
The total amount of genetic information in the chromosomes of an organism, including its genes and DNA sequences. The genome of eukaryotes is made up of a single, haploid set of chromosomes that is contained in the nucleus of every cell and exists in two copies in the chromosomes of all cells except reproductive and red blood cells. The human genome is made up of about 35,000 genes.
this is done by me and my team mates of Wayamba University Sri Lanka for our project.From now we decided to allow download this file.I would be greatful if you could send your comments..
And I'm willing to help you in similar works.I'm in final year of my degree(.BSc Biotechnology)..
pubudu_gokarella@yahoo.com
The document provides study materials for Mrs. Ulry's Biology 202B class, including a review of key concepts from four class units and a 20 question multiple choice exam covering those units. It reviews differences between DNA and RNA, genetic processes like transcription and translation, evolutionary concepts like natural selection and genetic drift, and taxonomy. Sample review questions are provided to help students prepare for the exam.
The document describes a comparative analysis of human chromosome 22q11.1-q12.3 and syntenic regions in chimpanzee, baboon, bovine, mouse, pufferfish and zebrafish genomes. It finds that while the human and chimpanzee genomes are about 98% identical, differences increase in other species like baboons at 92% and mice at 90%. Various deletions, duplications and other structural variations are observed between species. About half of predicted human genes on chromosome 22 have been experimentally validated.
Genomic variation refers to slight differences in genetic material between organisms. It includes mutations, which are mistakes in DNA copying, and polymorphisms, where multiple alleles exist for a gene. Variations are found throughout genomes and are not evenly distributed. Studying genomic variation helps with genome mapping and screening for genetic diseases. Phylogeny determines evolutionary relationships between species based on physical/genetic similarities from fossils, molecules, and genes. A phylogenetic tree shows inferred relationships in a branching diagram. Synteny refers to homologous genes occurring in the same order on chromosomes, showing closely related species have similar gene order and large syntenic regions. The document compares gene order and syntenic regions among rice, sorghum, maize, and
Dan Graur - Can the human genome be 100% functional?Andrei Afanasiev
ย
(1) The document discusses the concept of genomic function and argues that not all parts of the genome are functional. It defines functional DNA as DNA whose sequence is under selection, and whose absence would impair fitness.
(2) The document discusses different concepts of biological function and argues the appropriate concept is "selected effect function" - a part's historical role in adaptation and survival, not just causal roles.
(3) It argues activity like transcription does not prove function, and most genome is likely nonfunctional or neutral "rubbish". Function should be defined by its evolutionary role, not biochemical properties.
http://hrst.mit.edu/hrs/evolution/public/profiles/king.html
http://hrst.mit.edu/hrs/evolution/public/profiles/jukes.html
http://hrst.mit.edu/hrs/evolution/public/papers/simpson1964/simpson1964.pdf
http://hrst.mit.edu/hrs/evolution/public/kimura1968/kimura1968.pdf
http://hrst.mit.edu/hrs/evolution/public/papers/kimura1968/kimura1968.pdf
http://hrst.mit.edu/hrs/evolution/public/papers/simpson1964/simpson1964.pdf
DISREGARD:
Evolutionary Rate at the Molecular Level
b y
M O T 0 0 KIMURA
National Institute of Genetics,
Japan
Calculating the rate of evolution in terms of nucleotide substitutions
seems t o give a value so high that many of the mutations involved
must be neutral ones.
COMPARATIVE studies of haemoglobin molecules among change in for a chain consisting of some amino-
different groups of animals suggest that, during the acids. For example, by comparing the and chains of
evolutionary history of mammals, amino-acid substitution man with those of horse, pig, cattle and rabbit, the
has taken place roughly at the rate of one amino-acid figure of one amino-acid change in x was obtained'.
http://hrst.mit.edu/hrs/evolution/public/profiles/kimura.html
http://hrst.mit.edu/hrs/evolution/public/papers/zuckerkandlpauling1965/zuckerkandlpauling1965.pdf
This is roughly equivalent to the rate of one amino-acid
substitution in for a chain consisting of
amino-acids.
A comparable value has been derived from the study
of the haemoglobin of primates. The rate of amino-acid
substitution calculated by comparing mammalian and
avian cytochrome c (consisting of about 100 amino-acids)
turned out to be one replacement in 48 x 106 yr (ref. 3).
Also by comparing the amino-acid composition of human
triosephosphate dehydrogenase with that of rabbit and
figure of a t least one amino-acid substitution
for every X yr can be obtained for the chain con-
sisting of about amino-acids. This figure is roughly
equivalent to the rate of one amino-acid substitution in
x yr for a chain consisting of amino-acids.
Averaging those figures for haemoglobin, cytochrome c
and triosephosphateโ dehydrogenase gives an evolutionary
rate of approximately one substitution in 28 x 108 yr for
a polypeptide chain consisting of 100 amino-acids.
I intend to show that this evolutionary rate, although
appearing to be very low for each polypeptide chain of a
size of cytochrome c, actually amounts t o a very high
rate for the entire genome.
First, the DNA content in each nucleus is roughly the
same among different species of mammals such as man,
cattle and rat (see, for example, ref. 5 ) . Furthermore, we
note that the G-C content of DNA is fairly uniform among
mammals, lying roughly within the range of 40-44 per
These two facts suggest that nucleotide substitution
played a principal part in mammalian evolution.
I n t h e following calculation, I shall assume that the
haploid c ...
This ppt clarifies the differences and similarities of DNA of human and ape. Gives a conclusion that how the minimum differences gives major differences among human and ape.
This document discusses the nature and structure of genes based on research evidence. It makes three key points:
1) Genes are units of heredity located on chromosomes that direct the synthesis of proteins. While contained in the nucleus of eukaryotic cells, some genes are also found in mitochondria, chloroplasts, and plasmids.
2) Genetic research shows the mechanism of transmitting genetic information from parents to offspring is fundamentally similar across life forms, though some variations exist. Nucleic acids, particularly DNA, carry this genetic information.
3) Individual gene loci are complex, composed of many linearly arranged sites where mutation and recombination can occur. The number of sites per locus appears to
1. The document discusses the nature and structure of genes based on research in microbiology and genetics.
2. It describes genes as units of heredity located on chromosomes that direct protein synthesis. Genes are made of DNA and contain multiple sites where mutations can occur.
3. Research has found that genes have a complex internal structure, with many subunits or sites arranged linearly along the DNA molecule. Mutations at different sites can result in different alleles or variants of a gene.
This document provides an overview of comparative genomics. It defines comparative genomics as combining genomic data and evolutionary biology to study genome structure, evolution and function. It discusses three levels of genome comparison: bulk properties like chromosome size and number, whole genome sequence similarity and organization, and functional genome features. The history of experimental comparative genomics is reviewed, noting that practical comparisons predated widespread genome sequencing.
The Human Genome Project was an international scientific research project with the goal of determining the sequence of nucleotide base pairs that make up human DNA. It originally aimed to map the over three billion nucleotides contained in the human genome. The finished human genome is a mosaic assembled from sequencing a small number of individuals. The project has provided insights into human genetics and disease research.
1. Bacterial genetics follows the same principles as other organisms, with bacteria reproducing asexually and passing genetic traits from parents to offspring.
2. DNA was discovered to be the genetic material through experiments like Griffith's, which showed that killed pneumococci could transfer genetic material to live pneumococci.
3. Bacteria have mechanisms for horizontal gene transfer including transformation, transduction, and conjugation. Conjugation involves direct contact between bacteria and transfer of plasmids which can carry antibiotic resistance or other genes.
This document provides an overview of genomics, including its history, major research areas, and applications. Genomics is concerned with studying the genomes of organisms, including determining entire DNA sequences and genetic mapping. Major research areas discussed include bacteriophage, human, computational, and comparative genomics. Applications of genomics discussed include functional genomics, predictive medicine, metagenomics for medicine, biofuels and more. The first genomes sequenced were small viruses and mitochondria, while the human genome project aimed to map the entire human DNA sequence.
The document discusses biotechnology and its traditional and modern applications. It summarizes that biotechnology has traditionally involved techniques like using yeast to make beer/wine and selective breeding of plants and animals. Modern biotechnology focuses on genetic engineering using recombinant DNA technology to modify genes and achieve goals like understanding disease and improving agriculture. It also discusses techniques like polymerase chain reaction (PCR) and gel electrophoresis that are used in biotechnology and forensics.
Nuclear Genomes(Short Answers and questions)Zohaib HUSSAIN
ย
1. What did researchers find when they sequenced the centromeres of Arabidopsis? Why was this finding surprising?
Ans: Before the Arabidopsis sequences were obtained it was thought that these repeat sequences were by far the principal component of centromeric DNA. However, Arabidopsis centromeres also contain multiple copies of genome-wide repeats, along with a few genes, the latter at a density of 7โ9 per 100 kb compared with 25 genes per 100 kb for the noncentromeric regions of Arabidopsis chromosomes. The discovery that centromeric DNA contains genes was a big surprise because it was thought that these regions were genetically inactive.
2. What differences in gene distribution and repetitive DNA content are seen when yeast and human chromosomes are compared?
Ans. A typical region of a human chromosome will have few genes (most of which will contain introns), several repeated sequences, and a large amount of nonrepetitive, nongenic DNA. Yeast chromosomes have higher gene densities, with very few genes containing introns, and have few repeated sequences and much less nongenic DNA.
3. The human genome contains about 50,000 fewer genes than was predicted by many researchers. Why were these initial predictions so high?
Ans. These early estimates were high because they were based on the supposition that, in most cases, a single gene specifies a single mRNA and a single protein. According to this model, the number of genes in the human genome should be similar to the number of proteins in human cells, leading to the estimates of 80,000โ100,000. The discovery that the number of genes is much lower than this indicates that alternative splicing, the process by which exons from a pre-mRNA are assembled in different combinations so that more than one protein can be coded by a single gene is more prevalent than was originally appreciated.
4. What are the different methods used to catalog genes? What are the advantages or disadvantages of these methods?
Ans. Gene catalogs can be based on the known functions of genes, but such catalogs are incomplete because in most genomes many genes have unknown functions. Gene catalogs that are based on the identities of protein domains coded by genes are more comprehensive as these include many genes whose specific functions are unknown.
5. What is the function of the different genes in the human globin gene families?
Ans. The globins are the blood proteins that combine to make hemoglobin, each molecule of hemoglobin being made up of two a-type and two b-type globins.The a-globin cluster is located on chromosome 16 and the b-cluster on chromosome 11. Both clusters contain genes that are expressed at different developmental stages and each includes at least one pseudogene. Note that expression of the a-type gene x2 begins in the embryo and continues during the fetal stage; there is no fetal-specific a-type globin. The q pseudogene is expressed but its protein product is inactive. None of the other p
The document discusses different types of genomes, including viral, bacterial, plant, and animal genomes. It provides details on the structure and size of these genomes. Some key points include:
- A genome is the complete set of DNA or RNA in an organism, including all its genes. It provides all the information needed to build and maintain the organism.
- Viral genomes can be single or double-stranded DNA or RNA and range in size from 2kb to 2500kb. Bacterial genomes are generally smaller than eukaryotic genomes, ranging from 130kb to 14Mbp.
- Plant genomes can vary greatly in size from 15Mbp in green algae to much larger and complex genomes in
Dna content,c value paradox, euchromatin heterochromatin, banding patternArchanaSoni3
ย
DNA content refers to the amount of DNA in an organism's haploid chromosomes. It varies greatly between organisms, with eukaryotes generally having more DNA than prokaryotes. The amount of DNA does not always correlate with an organism's complexity, known as the C-value paradox. This is because eukaryotic DNA contains large amounts of non-coding repetitive sequences. Chromatin exists in two forms - euchromatin, which is less condensed and permits gene expression, and heterochromatin, which is highly condensed and usually silences genes. Heterochromatin forms in specific regions like centromeres and telomeres and is important for chromosome function and stability.
A complete set of chromosomes/genes inherited as a unit from one parent called genome. The entire genetic complement of a living organism.
The total amount of genetic information in the chromosomes of an organism, including its genes and DNA sequences. The genome of eukaryotes is made up of a single, haploid set of chromosomes that is contained in the nucleus of every cell and exists in two copies in the chromosomes of all cells except reproductive and red blood cells. The human genome is made up of about 35,000 genes.
this is done by me and my team mates of Wayamba University Sri Lanka for our project.From now we decided to allow download this file.I would be greatful if you could send your comments..
And I'm willing to help you in similar works.I'm in final year of my degree(.BSc Biotechnology)..
pubudu_gokarella@yahoo.com
The document provides study materials for Mrs. Ulry's Biology 202B class, including a review of key concepts from four class units and a 20 question multiple choice exam covering those units. It reviews differences between DNA and RNA, genetic processes like transcription and translation, evolutionary concepts like natural selection and genetic drift, and taxonomy. Sample review questions are provided to help students prepare for the exam.
The document describes a comparative analysis of human chromosome 22q11.1-q12.3 and syntenic regions in chimpanzee, baboon, bovine, mouse, pufferfish and zebrafish genomes. It finds that while the human and chimpanzee genomes are about 98% identical, differences increase in other species like baboons at 92% and mice at 90%. Various deletions, duplications and other structural variations are observed between species. About half of predicted human genes on chromosome 22 have been experimentally validated.
Genomic variation refers to slight differences in genetic material between organisms. It includes mutations, which are mistakes in DNA copying, and polymorphisms, where multiple alleles exist for a gene. Variations are found throughout genomes and are not evenly distributed. Studying genomic variation helps with genome mapping and screening for genetic diseases. Phylogeny determines evolutionary relationships between species based on physical/genetic similarities from fossils, molecules, and genes. A phylogenetic tree shows inferred relationships in a branching diagram. Synteny refers to homologous genes occurring in the same order on chromosomes, showing closely related species have similar gene order and large syntenic regions. The document compares gene order and syntenic regions among rice, sorghum, maize, and
Dan Graur - Can the human genome be 100% functional?Andrei Afanasiev
ย
(1) The document discusses the concept of genomic function and argues that not all parts of the genome are functional. It defines functional DNA as DNA whose sequence is under selection, and whose absence would impair fitness.
(2) The document discusses different concepts of biological function and argues the appropriate concept is "selected effect function" - a part's historical role in adaptation and survival, not just causal roles.
(3) It argues activity like transcription does not prove function, and most genome is likely nonfunctional or neutral "rubbish". Function should be defined by its evolutionary role, not biochemical properties.
http://hrst.mit.edu/hrs/evolution/public/profiles/king.html
http://hrst.mit.edu/hrs/evolution/public/profiles/jukes.html
http://hrst.mit.edu/hrs/evolution/public/papers/simpson1964/simpson1964.pdf
http://hrst.mit.edu/hrs/evolution/public/kimura1968/kimura1968.pdf
http://hrst.mit.edu/hrs/evolution/public/papers/kimura1968/kimura1968.pdf
http://hrst.mit.edu/hrs/evolution/public/papers/simpson1964/simpson1964.pdf
DISREGARD:
Evolutionary Rate at the Molecular Level
b y
M O T 0 0 KIMURA
National Institute of Genetics,
Japan
Calculating the rate of evolution in terms of nucleotide substitutions
seems t o give a value so high that many of the mutations involved
must be neutral ones.
COMPARATIVE studies of haemoglobin molecules among change in for a chain consisting of some amino-
different groups of animals suggest that, during the acids. For example, by comparing the and chains of
evolutionary history of mammals, amino-acid substitution man with those of horse, pig, cattle and rabbit, the
has taken place roughly at the rate of one amino-acid figure of one amino-acid change in x was obtained'.
http://hrst.mit.edu/hrs/evolution/public/profiles/kimura.html
http://hrst.mit.edu/hrs/evolution/public/papers/zuckerkandlpauling1965/zuckerkandlpauling1965.pdf
This is roughly equivalent to the rate of one amino-acid
substitution in for a chain consisting of
amino-acids.
A comparable value has been derived from the study
of the haemoglobin of primates. The rate of amino-acid
substitution calculated by comparing mammalian and
avian cytochrome c (consisting of about 100 amino-acids)
turned out to be one replacement in 48 x 106 yr (ref. 3).
Also by comparing the amino-acid composition of human
triosephosphate dehydrogenase with that of rabbit and
figure of a t least one amino-acid substitution
for every X yr can be obtained for the chain con-
sisting of about amino-acids. This figure is roughly
equivalent to the rate of one amino-acid substitution in
x yr for a chain consisting of amino-acids.
Averaging those figures for haemoglobin, cytochrome c
and triosephosphateโ dehydrogenase gives an evolutionary
rate of approximately one substitution in 28 x 108 yr for
a polypeptide chain consisting of 100 amino-acids.
I intend to show that this evolutionary rate, although
appearing to be very low for each polypeptide chain of a
size of cytochrome c, actually amounts t o a very high
rate for the entire genome.
First, the DNA content in each nucleus is roughly the
same among different species of mammals such as man,
cattle and rat (see, for example, ref. 5 ) . Furthermore, we
note that the G-C content of DNA is fairly uniform among
mammals, lying roughly within the range of 40-44 per
These two facts suggest that nucleotide substitution
played a principal part in mammalian evolution.
I n t h e following calculation, I shall assume that the
haploid c ...
This ppt clarifies the differences and similarities of DNA of human and ape. Gives a conclusion that how the minimum differences gives major differences among human and ape.
This document discusses the nature and structure of genes based on research evidence. It makes three key points:
1) Genes are units of heredity located on chromosomes that direct the synthesis of proteins. While contained in the nucleus of eukaryotic cells, some genes are also found in mitochondria, chloroplasts, and plasmids.
2) Genetic research shows the mechanism of transmitting genetic information from parents to offspring is fundamentally similar across life forms, though some variations exist. Nucleic acids, particularly DNA, carry this genetic information.
3) Individual gene loci are complex, composed of many linearly arranged sites where mutation and recombination can occur. The number of sites per locus appears to
1. The document discusses the nature and structure of genes based on research in microbiology and genetics.
2. It describes genes as units of heredity located on chromosomes that direct protein synthesis. Genes are made of DNA and contain multiple sites where mutations can occur.
3. Research has found that genes have a complex internal structure, with many subunits or sites arranged linearly along the DNA molecule. Mutations at different sites can result in different alleles or variants of a gene.
This document provides an overview of comparative genomics. It defines comparative genomics as combining genomic data and evolutionary biology to study genome structure, evolution and function. It discusses three levels of genome comparison: bulk properties like chromosome size and number, whole genome sequence similarity and organization, and functional genome features. The history of experimental comparative genomics is reviewed, noting that practical comparisons predated widespread genome sequencing.
The Human Genome Project was an international scientific research project with the goal of determining the sequence of nucleotide base pairs that make up human DNA. It originally aimed to map the over three billion nucleotides contained in the human genome. The finished human genome is a mosaic assembled from sequencing a small number of individuals. The project has provided insights into human genetics and disease research.
1. Bacterial genetics follows the same principles as other organisms, with bacteria reproducing asexually and passing genetic traits from parents to offspring.
2. DNA was discovered to be the genetic material through experiments like Griffith's, which showed that killed pneumococci could transfer genetic material to live pneumococci.
3. Bacteria have mechanisms for horizontal gene transfer including transformation, transduction, and conjugation. Conjugation involves direct contact between bacteria and transfer of plasmids which can carry antibiotic resistance or other genes.
This document provides an overview of genomics, including its history, major research areas, and applications. Genomics is concerned with studying the genomes of organisms, including determining entire DNA sequences and genetic mapping. Major research areas discussed include bacteriophage, human, computational, and comparative genomics. Applications of genomics discussed include functional genomics, predictive medicine, metagenomics for medicine, biofuels and more. The first genomes sequenced were small viruses and mitochondria, while the human genome project aimed to map the entire human DNA sequence.
The document discusses biotechnology and its traditional and modern applications. It summarizes that biotechnology has traditionally involved techniques like using yeast to make beer/wine and selective breeding of plants and animals. Modern biotechnology focuses on genetic engineering using recombinant DNA technology to modify genes and achieve goals like understanding disease and improving agriculture. It also discusses techniques like polymerase chain reaction (PCR) and gel electrophoresis that are used in biotechnology and forensics.
Nuclear Genomes(Short Answers and questions)Zohaib HUSSAIN
ย
1. What did researchers find when they sequenced the centromeres of Arabidopsis? Why was this finding surprising?
Ans: Before the Arabidopsis sequences were obtained it was thought that these repeat sequences were by far the principal component of centromeric DNA. However, Arabidopsis centromeres also contain multiple copies of genome-wide repeats, along with a few genes, the latter at a density of 7โ9 per 100 kb compared with 25 genes per 100 kb for the noncentromeric regions of Arabidopsis chromosomes. The discovery that centromeric DNA contains genes was a big surprise because it was thought that these regions were genetically inactive.
2. What differences in gene distribution and repetitive DNA content are seen when yeast and human chromosomes are compared?
Ans. A typical region of a human chromosome will have few genes (most of which will contain introns), several repeated sequences, and a large amount of nonrepetitive, nongenic DNA. Yeast chromosomes have higher gene densities, with very few genes containing introns, and have few repeated sequences and much less nongenic DNA.
3. The human genome contains about 50,000 fewer genes than was predicted by many researchers. Why were these initial predictions so high?
Ans. These early estimates were high because they were based on the supposition that, in most cases, a single gene specifies a single mRNA and a single protein. According to this model, the number of genes in the human genome should be similar to the number of proteins in human cells, leading to the estimates of 80,000โ100,000. The discovery that the number of genes is much lower than this indicates that alternative splicing, the process by which exons from a pre-mRNA are assembled in different combinations so that more than one protein can be coded by a single gene is more prevalent than was originally appreciated.
4. What are the different methods used to catalog genes? What are the advantages or disadvantages of these methods?
Ans. Gene catalogs can be based on the known functions of genes, but such catalogs are incomplete because in most genomes many genes have unknown functions. Gene catalogs that are based on the identities of protein domains coded by genes are more comprehensive as these include many genes whose specific functions are unknown.
5. What is the function of the different genes in the human globin gene families?
Ans. The globins are the blood proteins that combine to make hemoglobin, each molecule of hemoglobin being made up of two a-type and two b-type globins.The a-globin cluster is located on chromosome 16 and the b-cluster on chromosome 11. Both clusters contain genes that are expressed at different developmental stages and each includes at least one pseudogene. Note that expression of the a-type gene x2 begins in the embryo and continues during the fetal stage; there is no fetal-specific a-type globin. The q pseudogene is expressed but its protein product is inactive. None of the other p
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Philippine Edukasyong Pantahanan at Pangkabuhayan (EPP) CurriculumMJDuyan
ย
(๐๐๐ ๐๐๐) (๐๐๐ฌ๐ฌ๐จ๐ง ๐)-๐๐ซ๐๐ฅ๐ข๐ฆ๐ฌ
๐๐ข๐ฌ๐๐ฎ๐ฌ๐ฌ ๐ญ๐ก๐ ๐๐๐ ๐๐ฎ๐ซ๐ซ๐ข๐๐ฎ๐ฅ๐ฎ๐ฆ ๐ข๐ง ๐ญ๐ก๐ ๐๐ก๐ข๐ฅ๐ข๐ฉ๐ฉ๐ข๐ง๐๐ฌ:
- Understand the goals and objectives of the Edukasyong Pantahanan at Pangkabuhayan (EPP) curriculum, recognizing its importance in fostering practical life skills and values among students. Students will also be able to identify the key components and subjects covered, such as agriculture, home economics, industrial arts, and information and communication technology.
๐๐ฑ๐ฉ๐ฅ๐๐ข๐ง ๐ญ๐ก๐ ๐๐๐ญ๐ฎ๐ซ๐ ๐๐ง๐ ๐๐๐จ๐ฉ๐ ๐จ๐ ๐๐ง ๐๐ง๐ญ๐ซ๐๐ฉ๐ซ๐๐ง๐๐ฎ๐ซ:
-Define entrepreneurship, distinguishing it from general business activities by emphasizing its focus on innovation, risk-taking, and value creation. Students will describe the characteristics and traits of successful entrepreneurs, including their roles and responsibilities, and discuss the broader economic and social impacts of entrepreneurial activities on both local and global scales.
Gender and Mental Health - Counselling and Family Therapy Applications and In...PsychoTech Services
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A proprietary approach developed by bringing together the best of learning theories from Psychology, design principles from the world of visualization, and pedagogical methods from over a decade of training experience, that enables you to: Learn better, faster!
Chapter wise All Notes of First year Basic Civil Engineering.pptxDenish Jangid
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Chapter wise All Notes of First year Basic Civil Engineering
Syllabus
Chapter-1
Introduction to objective, scope and outcome the subject
Chapter 2
Introduction: Scope and Specialization of Civil Engineering, Role of civil Engineer in Society, Impact of infrastructural development on economy of country.
Chapter 3
Surveying: Object Principles & Types of Surveying; Site Plans, Plans & Maps; Scales & Unit of different Measurements.
Linear Measurements: Instruments used. Linear Measurement by Tape, Ranging out Survey Lines and overcoming Obstructions; Measurements on sloping ground; Tape corrections, conventional symbols. Angular Measurements: Instruments used; Introduction to Compass Surveying, Bearings and Longitude & Latitude of a Line, Introduction to total station.
Levelling: Instrument used Object of levelling, Methods of levelling in brief, and Contour maps.
Chapter 4
Buildings: Selection of site for Buildings, Layout of Building Plan, Types of buildings, Plinth area, carpet area, floor space index, Introduction to building byelaws, concept of sun light & ventilation. Components of Buildings & their functions, Basic concept of R.C.C., Introduction to types of foundation
Chapter 5
Transportation: Introduction to Transportation Engineering; Traffic and Road Safety: Types and Characteristics of Various Modes of Transportation; Various Road Traffic Signs, Causes of Accidents and Road Safety Measures.
Chapter 6
Environmental Engineering: Environmental Pollution, Environmental Acts and Regulations, Functional Concepts of Ecology, Basics of Species, Biodiversity, Ecosystem, Hydrological Cycle; Chemical Cycles: Carbon, Nitrogen & Phosphorus; Energy Flow in Ecosystems.
Water Pollution: Water Quality standards, Introduction to Treatment & Disposal of Waste Water. Reuse and Saving of Water, Rain Water Harvesting. Solid Waste Management: Classification of Solid Waste, Collection, Transportation and Disposal of Solid. Recycling of Solid Waste: Energy Recovery, Sanitary Landfill, On-Site Sanitation. Air & Noise Pollution: Primary and Secondary air pollutants, Harmful effects of Air Pollution, Control of Air Pollution. . Noise Pollution Harmful Effects of noise pollution, control of noise pollution, Global warming & Climate Change, Ozone depletion, Greenhouse effect
Text Books:
1. Palancharmy, Basic Civil Engineering, McGraw Hill publishers.
2. Satheesh Gopi, Basic Civil Engineering, Pearson Publishers.
3. Ketki Rangwala Dalal, Essentials of Civil Engineering, Charotar Publishing House.
4. BCP, Surveying volume 1
it describes the bony anatomy including the femoral head , acetabulum, labrum . also discusses the capsule , ligaments . muscle that act on the hip joint and the range of motion are outlined. factors affecting hip joint stability and weight transmission through the joint are summarized.
LAND USE LAND COVER AND NDVI OF MIRZAPUR DISTRICT, UPRAHUL
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This Dissertation explores the particular circumstances of Mirzapur, a region located in the
core of India. Mirzapur, with its varied terrains and abundant biodiversity, offers an optimal
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analyze the transformations that have taken place over the course of a decade.
The complex relationship between human activities and the environment has been the focus
of extensive research and worry. As the global community grapples with swift urbanization,
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significant role in maintaining the ecological equilibrium of our planet.Land serves as the foundation for all human activities and provides the necessary materials for
these activities. As the most crucial natural resource, its utilization by humans results in different
'Land uses,' which are determined by both human activities and the physical characteristics of the
land.
The utilization of land is impacted by human needs and environmental factors. In countries
like India, rapid population growth and the emphasis on extensive resource exploitation can lead
to significant land degradation, adversely affecting the region's land cover.
Therefore, human intervention has significantly influenced land use patterns over many
centuries, evolving its structure over time and space. In the present era, these changes have
accelerated due to factors such as agriculture and urbanization. Information regarding land use and
cover is essential for various planning and management tasks related to the Earth's surface,
providing crucial environmental data for scientific, resource management, policy purposes, and
diverse human activities.
Accurate understanding of land use and cover is imperative for the development planning
of any area. Consequently, a wide range of professionals, including earth system scientists, land
and water managers, and urban planners, are interested in obtaining data on land use and cover
changes, conversion trends, and other related patterns. The spatial dimensions of land use and
cover support policymakers and scientists in making well-informed decisions, as alterations in
these patterns indicate shifts in economic and social conditions. Monitoring such changes with the
help of Advanced technologies like Remote Sensing and Geographic Information Systems is
crucial for coordinated efforts across different administrative levels. Advanced technologies like
Remote Sensing and Geographic Information Systems
9
Changes in vegetation cover refer to variations in the distribution, composition, and overall
structure of plant communities across different temporal and spatial scales. These changes can
occur natural.
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Walmart Business+ and Spark Good for Nonprofits.pdfTechSoup
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Answers about how you can do more with Walmart!"
Strategies for Effective Upskilling is a presentation by Chinwendu Peace in a Your Skill Boost Masterclass organisation by the Excellence Foundation for South Sudan on 08th and 09th June 2024 from 1 PM to 3 PM on each day.
Temple of Asclepius in Thrace. Excavation resultsKrassimira Luka
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The temple and the sanctuary around were dedicated to Asklepios Zmidrenus. This name has been known since 1875 when an inscription dedicated to him was discovered in Rome. The inscription is dated in 227 AD and was left by soldiers originating from the city of Philippopolis (modern Plovdiv).
2. ๏ต Introduction
๏ต Genome
๏ต Definition
๏ต History
๏ต C โ Value Paradox
๏ต C-value Enigma
๏ต Reason Of C-value Paradox
๏ต Several Factors That Explains The Classic C-value Paradox
๏ต Conclusion
3. ๏ Quantity of DNA in an organism per cell in all cell is always constant
for a given species.
๏ The list of organisms on this planet with teaming millions, each have
its own genome whose size varies from one species to the other and no
two species have the same amount of genome nor the same genomic
value or character ?
๏ Variation in genomic content ( both qualitatively and quantitative)
within a phylum or an order or genus is surprisingly large from 10^5
BP to 10^12 bps.
๏ Animal show variations range more than 3,300-fold and in land
plants among them differ by a factor of about 1000, Protists
genome have been surprisingly vary more than 3000,000 fold in
size.
4. ๏ In the fields of molecular biology and genetics, a genome is
all the genetic information of an organism.
๏ It consists of nucleotide sequences of DNA (or RNA in RNA
viruses). The nuclear genome includes protein-coding genes
and non-coding genes, other functional regions of the
genome such as regulatory sequences (see non-coding DNA),
and often a substantial fraction of โjunkโ DNA with no
evident function .
๏ Almost all eukaryotes have mitochondria and a small
mitochondrial genome .
๏ Algae and plants also contain chloroplasts with a chloroplast
genome.
5. The C-value enigma or C-value paradox is a term used to describe the
complex puzzle surrounding the extensive variation in nuclear genome
size among eukaryotic species.
OR
C-value paradox is total amount of DNA present in genome expressed in
base pairs.
๏ The amount DNA Found in haploid genome , Measured in million base
pairs, or in pg; the C may mean constancy of the genome in the species.
๏ Genome size does not correlate with organismal complexity; for
example, some single- celled Protists have genome much larger than of
humans.
6. ๏ The term of c-value paradox was used by C.A.
Thomas in 1971 .
๏ The term of c-value enigma was coined by
Canadian biologist Dr. T. Ryan Gregory of the
university of Guelph in 2000/2001.
๏ The discovery of non- coding DNA in the early
1970s resolved the main question of the c-value.
7. ๏ The c-value paradox refer to the observation that genome
size does not uniformly increase with respect to perceive
complexity of organisms , for example Some Amphibians
have more than 10-fold more DAN than do Mammals,
including Human.
๏ Example in C-value
1. Mycoplasma - 10^5 bp
2. (-) Bacteria - 4.2 to 5ร10^6 bp
3. (+) Bacteria - 2 to 8ร10^6 bp
4. Algae - 5 to 8ร10^7 bp
5. Warms - 7ร10^7 to 2ร10^8 bp
6. Insects - 1.5ร10^8 to 6ร10^9 bp
7. Mammals - 3ร10^9 to 5ร10^9 bp
8. ๏ It is the clear from above value โas
completely increase the c-value
increase from simplex to complex
fromโ.
๏ โThere linear relationship between
genome size and organism
complexityโ.
Not true
9. ๏ The Complexity related to c-value i.e. there is not linear relationship between
genome size and organism complexity
๏ Example- Housefly- 8.6ร10^8
Drosophila โ 1.4ร10^8
(Both are in same group)
10. ๏C-value enigma represent an
updated term of c-value paradox.
๏Coined by Dr. T. Ryan Gregory in
2001.
๏DNA consists of coding and
noncoding DNA.
11. ๏Due to presence of repetitive DNA
i.e. the sequence which repeat In the
genome many times.
12. ๏It was said that โ as complexity
increase the c-value increases from
simpler to complex fromโ.
๏But is not true.