A description of services provided by the California Digital Library (CDL) to researchers at the University of California

1. Perry Willett
Stephen Abrams
University of California Curation Center
www.cdlib.org/uc3
CDL services for UC researchers
www.flickr.com/photos/infocux/8450190120www.flickr.com/photos/adavey/4735763989
Museum of Paleontology
UC Berkeley
April 7, 2015

2. www.flickr.com/photos/puroticorico/503484670
CDL Services and
the Research Cycle

3. Sharing your data
is good for science
 reproducibility  integrity
 enables collaboration and
synergy
 minimizes needless
duplication of effort
© Universal Pictures

4. “Papers with publicly available microarray data received
more citations than similar papers that did not make their
data available, even after controlling for many variables
known to influence citation rate”
Sharing your data is
good for scientists
 get credit for your work
 higher impact factor

5. … and you have to
(and should want to)
 funders (are starting to)
require it
 journals require it
 disciplinary best practice
(increasingly) expects it
“To do otherwise should come to be
regarded as scientific malpractice”
– Royal Society, 2014

6. what can I do?
www.flickr.com/photos/cristinacosta/4304968451
adopt the growing body of
good practices
10 aspirational goals ►

7. plan ahead
www.flickr.com/photos/wscullin/3770015203
10
implicit (non-)decisions
can have significant
consequences

8. plan ahead
www.flickr.com/photos/wscullin/3770015203
dmptool.org
10
a data management plan
describes your intentions
during and after your
research project

9. www.flickr.com/photos/epublicist/3546059144
prefer formats that are …
standard customized
open source proprietary
commonly-used obscure
self-describing opaque
text binary
9
be preservation-
friendly from
the start

10. assign an identifier
to your data
www.flickr.com/photos/erskinelibrary/4581870160
ezid.cdlib.orgdatacite.org
8
DOIs provide unambiguous
reference, persistent access,
and citation metrics
[digital object identifier]

11. get an identifier for
yourself
orcid.org
www.flickr.com/photos/mumpfpuffel/2337520969
7
ORCIDs provide unambiguous
reference and citation metrics
[open researcher and contributor identifier]
www.flickr.com/photos/mumpfpuffel/233752096

12. describe and
document
what would you
want to know
about someone
else’s data?
www.flickr.com/photos/61423903@N06/7357608430
who?
what?
when?
where?
how?
why?
…?
6

13. upload to a
repository
www.flickr.com/photos/teegardin/6094310934
re3data.org
databib.org
5
professional,
pro-active
management
merritt.cdlib.edu
replication
fixity
monitoring
media refresh
technology watch
disaster recovery/
business continuity
…
replication
fixity
monitoring
media refresh
technology watch
disaster recovery/
business continuity
…
dash.berkeley.edu

14. use a license with
the most permissive
terms
www.flickr.com/photos/_elemenoh_/147966697
4
allows simplest reuse
used by Dash
custom data use
agreement should be avoided

15. publish
3
www.nature.com/sdata
esapubs.org/archive
www.flickr.com/photos/takomabibelot/3984413475
so your data are available
to collaborators,
colleagues, and community

16. cite yourself and
others
2
add data citations to your CV
and publications
track usage of your data
products through alt-metrics
www.flickr.com/photos/rob_stone/559595880
plumanalytics.comaltmetric.com impactstory.org

17. preserve your code
1
everything just said about
data applies equally well
to code
www.flickr.com/photos/mwichary/3368836377
github.com sourceforge.com

18. plan
format
identify (your data)
identify (yourself)
describe
upload
license
publish
cite
code
data preservation 101
www.flickr.com/photos/santos/230060595

19. features:
• datasets!
• open to Berkeley researchers (faculty members, grad students)
• no cost (to you)
• assistance in describing your dataset
• easy drag-and-drop to assemble your files
• DOIs
• catalog of datasets from other UC researchers
dash.berkeley.edu

25. www.cdlib.org/uc3
uc3@ucop.edu
datapub.cdlib.org
for more information …

26. www.cdlib.org/uc3
uc3@ucop.edu
datapub.cdlib.org
for more information …
… also, a good paper to review:
Goodman, Pepe, Blocker, Borgman, Cranmer et al. (2014)
“Ten simple rules for the care and feeding of scientific data”
PLOS Computational Biology 10(4):e1003452,
doi:10.1371/journal.pcbi.1003542
… and ask your local librarian