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Towards automated monitoring of
Orthoptera
(and some other noisy stuff)
Ed Baker, Hannah O’Sullivan, Quentin Geissmann
A detour on frogs
Tachycnemis seychellensis
• Found on a number of
islands in the Seychelles
• Phylogeny of populations
shows no lineages specific
to individual islands
• Analysis of calls (16
parameters in frequency
domain from 3 islands)
A detour on frogs
Random forest method
(machine learning
classification)
Centre mixed as phylogeny
would suggest, but
differences between islands
Studying acoustics can reveal
interesting observations
Gryllotalpa vineae
Gryllotalpa vineae
Having fun in the time domain
• For automated studies lots of work has been done on pulse,
and inter-pulse features
• The pulse is the basic element of a song, but there is also
higher-level structures (syllables, echemes,… )
• The terminology of higher level structures generally (ideally)
reflects biological meaning
Chorthippus dorsatus
Can see high level structure
• Periodicity of approximately 1.5s (echeme)
Chorthippus dorsatus
Zoomed in, another level of structure is apparent
• Periodicity of approximately 80ms (syllable)
Chorthippus dorsatus
Repeat…
• Periodicity of approximately 4ms (pulse)
Chorthippus dorsatus
Towards computer identification
• The computer does not care about how individual authors
define syllables
• Just look for ‘rhythmicity’
In this example the rhythmicity spans over three orders of
magnitude
• Continuous wavelet transform
Chorthippus dorsatus
It’s good to have lots of
recordings
Dynamic Time Warping
Used to compare temporal sequences that may vary in speed
Can create clusters based on this
Very short
recording
Atypical
Time domain analysis
• Beat spectrum has potential for automated identification
• Particularly in combination with frequency domain
Requires:
• Annotated libraries of recorded songs (with multiple
recordings of each species)
A new project
Automated Acoustic Observatories
• Three year Leverhulme Trust funded project
• Two main themes
• Evolution of song in the Orthoptera
• Automated identification
Evolution
Supertree of Orthoptera
• 163 source trees
• Mapping of trait data, including acoustics to tree
• Methods from communications theory
As well as understanding the evolution of song, used to guide
identification algorithm in categorising unknown songs
Automated Identification
Combine time and frequency domain methods to identify
known orthoptera species.
• Acoustic features
• Weighted by location, time of year, habitat (niche models)
Provide as much information as possible about unknown songs
• Automatically record vouchers
• Best-effort attempt to categorise (e.g. family X, call adapted to
dense grass)

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Towards automated monitoring of Orthoptera (and some other noisy stuff)

  • 1. Towards automated monitoring of Orthoptera (and some other noisy stuff) Ed Baker, Hannah O’Sullivan, Quentin Geissmann
  • 2. A detour on frogs Tachycnemis seychellensis • Found on a number of islands in the Seychelles • Phylogeny of populations shows no lineages specific to individual islands • Analysis of calls (16 parameters in frequency domain from 3 islands)
  • 3. A detour on frogs Random forest method (machine learning classification) Centre mixed as phylogeny would suggest, but differences between islands Studying acoustics can reveal interesting observations
  • 6. Having fun in the time domain • For automated studies lots of work has been done on pulse, and inter-pulse features • The pulse is the basic element of a song, but there is also higher-level structures (syllables, echemes,… ) • The terminology of higher level structures generally (ideally) reflects biological meaning
  • 7. Chorthippus dorsatus Can see high level structure • Periodicity of approximately 1.5s (echeme)
  • 8. Chorthippus dorsatus Zoomed in, another level of structure is apparent • Periodicity of approximately 80ms (syllable)
  • 9. Chorthippus dorsatus Repeat… • Periodicity of approximately 4ms (pulse)
  • 10. Chorthippus dorsatus Towards computer identification • The computer does not care about how individual authors define syllables • Just look for ‘rhythmicity’ In this example the rhythmicity spans over three orders of magnitude • Continuous wavelet transform
  • 12. It’s good to have lots of recordings
  • 13. Dynamic Time Warping Used to compare temporal sequences that may vary in speed Can create clusters based on this
  • 15. Time domain analysis • Beat spectrum has potential for automated identification • Particularly in combination with frequency domain Requires: • Annotated libraries of recorded songs (with multiple recordings of each species)
  • 16. A new project Automated Acoustic Observatories • Three year Leverhulme Trust funded project • Two main themes • Evolution of song in the Orthoptera • Automated identification
  • 17. Evolution Supertree of Orthoptera • 163 source trees • Mapping of trait data, including acoustics to tree • Methods from communications theory As well as understanding the evolution of song, used to guide identification algorithm in categorising unknown songs
  • 18. Automated Identification Combine time and frequency domain methods to identify known orthoptera species. • Acoustic features • Weighted by location, time of year, habitat (niche models) Provide as much information as possible about unknown songs • Automatically record vouchers • Best-effort attempt to categorise (e.g. family X, call adapted to dense grass)