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•Personnel working in a Microbiology 
Laboratory directly or indirectly with 
biological agents are at risk from exposure to 
hazards . 
•Adequate precautions/Safety measures to 
be taken to avoid biological health hazards.
1. Group 1 – Unlikely to cause human 
disease 
2. Group 2- cause disease, Hazardous to 
employees 
3. Group 3- Cause severe disease & might 
spread to community 
4. Group 4- Severely Hazardous causing 
disease with no treatment available. 
Note : Microbiology dept. of MSK deals with 
biological agents mostly related to class 
2 & 3 .
Organism Biological Agent Hazard Group Notes 
Bacteria S. aureus 2 toxigenic 
E.coli 2 
B.cereus 2 
B.subtilis 2 Not in grup appvd 
by HSE 
S. typhi 2 Vaccine available 
S.flexneri 2 
P.aeruginosa 2 
P. mirabilis 2 
K. pneumoniae 2 
B. 
stearothermophilu 
s 
Not in grup appvd 
by HSE 
V. 
parahaemolyticus 
2 
V. cholerae 2
Enterococcus 
spp. 
2 
L. monocytogenes 2 
C.perfringens 2 
Clostridium spp. 2 
R. equi 2 
Fungi B. fulva Not in grup appvd 
by HSE 
Aspergillus spp. 
S.cerevisiae 
2 
Not in grup appvd 
by HSE
• Ingestion- Mouth pipetting, other means by which organisms are conveyed to mouth 
include fingers contaminated with spilled cultures, articles like pipes & cigarette & food 
directly or indirectly contaminated by fingers . 
• Inhalation – Many ordinary lab techniques with microorganisms ( using bacteriological 
loops, spreading culture on slides, mixing cultures by bubbling, opening culture tubes which 
have wet stopper , opening cultures containing fungal spores and opening lyophilized 
cultures etc) result in the release into the laboratory air of large amounts of aerosol ( 
minute droplets of liquid containing one or few microorganisms ) . Larger droplets settle 
rapidly but smaller droplets < 5 um remain suspended in air & are capable to move about a 
room/ building by small air currents . These particles if inhaled passes to lungs causing 
infection . 
•Through Skin(Percutaneous route)- Accidents leading to wounds are responsible for many 
kinds of infection . Cuts from broken culture tube or bottle can cause infection .Unbroken 
skin on hand contain many microscopic abrasions permitting entry of microorganisms from 
surface contaminated due to spillage or settling of large aerosol droplet . 
•Through Eye- Microorganisms may enter through the conjunctive in 2 ways 
rubbing with contaminated fingers & in splashes of culture fluids .
• Equipment- Even with best of techniques poor Equipment will lead to hazard. So to 
prevent hazards the instruments should be serviced regularly & calibrated at all times . 
• Carelessness – The best equipment will not protect a careless/ untrained personnel from 
hazard. So one must be careful while in laboratory and training & supervision must be 
provided to the new/ inexperienced personnel . 
•Bacteriological Loops- Loops larger than 3mm or are imperfectly closed shed their loads 
easily creating infectious aerosols or droplets . So such loops should be discarded 
immediately . 
•Slide preparation for Microscopy- The cheap slides with sharp edges are easily broken and 
may injure fingers with consequent risk of infection . 
•Pipe ting- Mouth pipe ting has already been banned to avoid hazards . Mechanical pipe 
ting devices and autopipetes are now used which are safe . Violent pipe ting & discharge 
must be avoided since both produces bubble which bursts producing aerosols . 
•Culture Containers- These should be robust .Thin glass tubes, petriplates, bottles are easily 
broken resulting in the dispersal of infectious material & possibly causing personal injury .
MINIMIZING INFECTION HAZARDS (Contd.) 
• Opening Culture Containers- Curators of culture collection usually issue 
instructions on how to open ampoules safely & it must be followed to prevent 
infectious hazard . 
• Pouring infectious Material- A funnel should be placed over a Discard jar and 
its outlet is just below the surface of the disinfectant . The supernatant fluid 
now be poured through the funnel . Any drop of liquid remaining in the tube 
should be wiped off with tissue paper & discarded in Disinfectant . 
• Catalase tests - +ve catalase produce bubbles of oxygen which disperse 
aerosols when they burst .so Slide catalase tests should be abandoned in favour 
of tube catalase tests which contain the aerosols. 
Personal Protection- Protective Clothing (gown), Masks, Head cap, Gloves, 
Shades must be worn while in clean zone to protect normal clothing, Skin, 
eyes, Nose , Hands etc. from getting infected . If not worn Normal clothes will 
get contaminated & the infection will spread among employees.
It is important that PPE be: 
Selected based upon the hazard to the worker; 
Properly fitted 
Conscientiously and properly worn; 
Regularly maintained 
Properly removed , cleaned, disinfected and stored.
MINIMIZING INFECTION HAZARDS (Contd.) 
Bio-Safety Cabinet- BSC class –II must be installed for the 
personnel to use . It provides a physical barrier too to the analyst 
performing the work . 
Medical Supervision – A staff should me medically supervised 
regularly since the personnel deals with pathogens . 
Hand Disinfection- it should be done properly by any lab personnel 
dealing with pathogens directly or indirectly particularly after 
completion of work and before having meal .
Responsibility : 
Management – Should appoint one or more persons to ensure that 
there are no infringements which might lead to litigation or criminal 
proceedings. Such individuals would be members of the safety staff. 
Safety Staff - one of the most important duties of the safety officer 
is the drawing up of local rules and codes of practice for the safe 
handling of micro-organisms and the protection of other workers. It is 
obvious that a microbiological safety officer should acquaint himself 
with all microbiological activities and techniques . For example, in a 
laboratory where dangerous pathogens are handled, he needs to know 
the whereabouts of all cultures and what every Analyst is doing with 
them. 
Laboratory Personnel- Must co-operate with Safety Staff & 
management to prevent Hazard .
CONCLUSIONS 
The hazards of working with micro-organisms are real 
but should not be regarded as alarming. if the risks are 
appreciated and appropriate techniques are used, 
casualties are few. The incidence of laboratory-acquired 
infections may be minimized and they may 
be almost entirely prevented by good laboratory 
design, correct equipment properly used, good 
housekeeping and training in careful technique. The 
sum of all these may be described as good laboratory 
practice.

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Professional health hazards in a microbiology laboratory and Precautions to be taken

  • 1.
  • 2. •Personnel working in a Microbiology Laboratory directly or indirectly with biological agents are at risk from exposure to hazards . •Adequate precautions/Safety measures to be taken to avoid biological health hazards.
  • 3. 1. Group 1 – Unlikely to cause human disease 2. Group 2- cause disease, Hazardous to employees 3. Group 3- Cause severe disease & might spread to community 4. Group 4- Severely Hazardous causing disease with no treatment available. Note : Microbiology dept. of MSK deals with biological agents mostly related to class 2 & 3 .
  • 4. Organism Biological Agent Hazard Group Notes Bacteria S. aureus 2 toxigenic E.coli 2 B.cereus 2 B.subtilis 2 Not in grup appvd by HSE S. typhi 2 Vaccine available S.flexneri 2 P.aeruginosa 2 P. mirabilis 2 K. pneumoniae 2 B. stearothermophilu s Not in grup appvd by HSE V. parahaemolyticus 2 V. cholerae 2
  • 5. Enterococcus spp. 2 L. monocytogenes 2 C.perfringens 2 Clostridium spp. 2 R. equi 2 Fungi B. fulva Not in grup appvd by HSE Aspergillus spp. S.cerevisiae 2 Not in grup appvd by HSE
  • 6. • Ingestion- Mouth pipetting, other means by which organisms are conveyed to mouth include fingers contaminated with spilled cultures, articles like pipes & cigarette & food directly or indirectly contaminated by fingers . • Inhalation – Many ordinary lab techniques with microorganisms ( using bacteriological loops, spreading culture on slides, mixing cultures by bubbling, opening culture tubes which have wet stopper , opening cultures containing fungal spores and opening lyophilized cultures etc) result in the release into the laboratory air of large amounts of aerosol ( minute droplets of liquid containing one or few microorganisms ) . Larger droplets settle rapidly but smaller droplets < 5 um remain suspended in air & are capable to move about a room/ building by small air currents . These particles if inhaled passes to lungs causing infection . •Through Skin(Percutaneous route)- Accidents leading to wounds are responsible for many kinds of infection . Cuts from broken culture tube or bottle can cause infection .Unbroken skin on hand contain many microscopic abrasions permitting entry of microorganisms from surface contaminated due to spillage or settling of large aerosol droplet . •Through Eye- Microorganisms may enter through the conjunctive in 2 ways rubbing with contaminated fingers & in splashes of culture fluids .
  • 7. • Equipment- Even with best of techniques poor Equipment will lead to hazard. So to prevent hazards the instruments should be serviced regularly & calibrated at all times . • Carelessness – The best equipment will not protect a careless/ untrained personnel from hazard. So one must be careful while in laboratory and training & supervision must be provided to the new/ inexperienced personnel . •Bacteriological Loops- Loops larger than 3mm or are imperfectly closed shed their loads easily creating infectious aerosols or droplets . So such loops should be discarded immediately . •Slide preparation for Microscopy- The cheap slides with sharp edges are easily broken and may injure fingers with consequent risk of infection . •Pipe ting- Mouth pipe ting has already been banned to avoid hazards . Mechanical pipe ting devices and autopipetes are now used which are safe . Violent pipe ting & discharge must be avoided since both produces bubble which bursts producing aerosols . •Culture Containers- These should be robust .Thin glass tubes, petriplates, bottles are easily broken resulting in the dispersal of infectious material & possibly causing personal injury .
  • 8. MINIMIZING INFECTION HAZARDS (Contd.) • Opening Culture Containers- Curators of culture collection usually issue instructions on how to open ampoules safely & it must be followed to prevent infectious hazard . • Pouring infectious Material- A funnel should be placed over a Discard jar and its outlet is just below the surface of the disinfectant . The supernatant fluid now be poured through the funnel . Any drop of liquid remaining in the tube should be wiped off with tissue paper & discarded in Disinfectant . • Catalase tests - +ve catalase produce bubbles of oxygen which disperse aerosols when they burst .so Slide catalase tests should be abandoned in favour of tube catalase tests which contain the aerosols. Personal Protection- Protective Clothing (gown), Masks, Head cap, Gloves, Shades must be worn while in clean zone to protect normal clothing, Skin, eyes, Nose , Hands etc. from getting infected . If not worn Normal clothes will get contaminated & the infection will spread among employees.
  • 9. It is important that PPE be: Selected based upon the hazard to the worker; Properly fitted Conscientiously and properly worn; Regularly maintained Properly removed , cleaned, disinfected and stored.
  • 10. MINIMIZING INFECTION HAZARDS (Contd.) Bio-Safety Cabinet- BSC class –II must be installed for the personnel to use . It provides a physical barrier too to the analyst performing the work . Medical Supervision – A staff should me medically supervised regularly since the personnel deals with pathogens . Hand Disinfection- it should be done properly by any lab personnel dealing with pathogens directly or indirectly particularly after completion of work and before having meal .
  • 11. Responsibility : Management – Should appoint one or more persons to ensure that there are no infringements which might lead to litigation or criminal proceedings. Such individuals would be members of the safety staff. Safety Staff - one of the most important duties of the safety officer is the drawing up of local rules and codes of practice for the safe handling of micro-organisms and the protection of other workers. It is obvious that a microbiological safety officer should acquaint himself with all microbiological activities and techniques . For example, in a laboratory where dangerous pathogens are handled, he needs to know the whereabouts of all cultures and what every Analyst is doing with them. Laboratory Personnel- Must co-operate with Safety Staff & management to prevent Hazard .
  • 12. CONCLUSIONS The hazards of working with micro-organisms are real but should not be regarded as alarming. if the risks are appreciated and appropriate techniques are used, casualties are few. The incidence of laboratory-acquired infections may be minimized and they may be almost entirely prevented by good laboratory design, correct equipment properly used, good housekeeping and training in careful technique. The sum of all these may be described as good laboratory practice.