This document summarizes a PhD thesis on online monitoring and control of the biogas process. It describes the development of a new online VFA monitoring system using gas-phase extraction to avoid sample filtration. This allows easy application to manure samples. The system was validated over 6 months and showed good agreement with offline VFA measurements. Response from this sensor was compared to other process parameters like biogas production, pH and hydrogen during overload situations. VFA was found to be the most reliable indicator of process imbalance. The thesis also investigated using a serial CSTR reactor configuration to improve biogas production from manure compared to a single CSTR reactor.