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Machine Learning In Health
Data Analytics And
Pharmacovigilance
1
Introduction
ā€¢ Intelligence of machines and the branch of computer
science which aims to create it.
ā€¢ ā€œMachines will be capable, within 20 years, of doing any work a
man can do.ā€ ā€“Herbert Simon, 1965(AI innovator)
2
Three Steps
Three elements of machine
learning
Computers and
programs
Massive amount ofdata
Sophisticated algorithms The Turing test
High performanceparallel
processors
The Darmont
Conference
Pharmacovigilance
ā€¢ The word ā€œPharmacovigilanceā€ was derived from the Greek literature
ā€œpharmakonā€ (means drug) and the word ā€œvigilareā€ (means keep watch) in Latin.
In 1961, the World Health Organization (WHO) has established the
pharmacovigilance (PV) program in response to the thalidomide disaster, for
global drug monitoring.
ā€¢ Many rare adverse effects remain undetected due to a limited number of
sampled individuals in a clinical trial; hence, it is necessary to monitor the drugs
even after their release into the market.
ā€¢ In this context, ā€œpharmacovigilanceā€ helps to collect, analyze, and disseminate
adverse drug reaction reports collected during the post-marketing phase.
3
Machine learning and pharmacovigilance
ā€¢ Monitoring the scientific literature for adverse drug reactions
(ADRs) is critical to maintaining drug safety, and there is no
room for error.
ā€¢ As regulations tighten, pharmacovigilance teams are seeking
better strategies and methods for ensuring that all ADRs are
identified in the most effective and efficient way possible.
ā€¢ Machine learning has been doing great work on the automated
extraction of ADRs from biomedical literature and FDA drug
labels.
ā€¢ As a part of outreach to the global pharmacovigilance
community
4
Health data analytics and
pharmacovigilance
5
Challenges for machine learning
Reasoning, Problem Solving
Knowledge representation
Planning
Learning
Natural language processing
Perception
Motion manipulation
Social Intelligence
Creativity
General Intelligence
6
Approaches
Cybernetics
Symbolic
Statistical
Integrating the approaches
Applications
Healthcare and Medicines
Automotive
Finance and economic
Video Games
Heavy Industries
Robotics
Machine learning in Healthcare
Managing Medical Records and other data
Doing repetitive jobs
Treatment Design
Digital Consultation
Virtual Nurses
Medication Management
Drug Discovery
Precision Medicine
Healthcare Monitoring
Healthcare SystemAnalysis
7
CT Participant Identifier
Connected Machines
Dosage error Detection
Fraud detection
Adm. workflowAssistance
Virtual Nurshingā€¦
Robot-assisted Surgery
Cybersecurity Advance Image Diagnosis and Preliminary Diagnosis by
using data analytics and machine learning.
8
estimated potential
annual benefit for each
application by 2026(in
billon USD)
0 10 20 30 40 50
Estimated potential annual benefit for each application
by 2026(in billon USD)
Source: AccentureAnalysis
Total= $150Billions
Many big Pharmaceutical companies began investing
in machine learning in order to develop better
diagnostics or biomarkers, to identify drug targets
and to design new drugs and products.
Merck partnership with Numerate in March 2012
focusing on generating novel small molecule drug
leads for unnamed cardiovascular disease target.
In december, 2016 Pfizer and IBM announced
partnership to accelerate drug discovery in immuno-
oncology.
Current Scenario
9
Disease Identification
10
2015- Report by Pharmaceutical Research and
Manufacturers of America- more than 800 drugs and
vaccines are in trial phase to treat cancer.
Googleā€™s DeepMind Health, announced multiple
partnerships including some eye hospitals in which
they are developing technology to address macular
degeneration in agingeyes.
Oxfordā€™s PivitalĀ® Predicting Response to Depression
Treatment (PReDicT) project is aiming to produce
commercially-available emotional test battery for use
in clinical setting.
Personalized Treatment
11
Micro biosensors and devices, mobile apps with more
sophisticated health-measurement and remote
monitoring capabilities; these data can further be used
for R&D.
DermCheck; app available in Google play store in
which images are sent to dermatologists(human not
machines)
Drug Discovery/Manufacturing
12
From initial screening of drug compounds to predicted
success rate based on biological factors.
R&D discovery technology; next-generation
sequencing.
Previous experiments are used to train the model
Optimization softwares (example:FormRules)
Designing of the processes
Clinical Trial Research
13
Machine learning- to shape, direct clinical trials
Advanced predictive analysis in identifying candidates
for clinical trials
Remote monitoring and real time data access for
increased safety; biological and other signals for any
sign of harm or death to participants.
Finding best sample sizes for increased efficiency;
addressing and adapting to differences in sites for
patient recruitments; using electronic medical records
to reduce data errors.
Epidemic Outbreak Prediction
14
To predict malaria outbreaks, from data like
temperature, average monthly rainfall, total number of
positive cases,etc.
ProMED-mail is a internet based reporting program
for monitoring emerging diseases and providing
outbreak reports.
Radiology and Radiotherapy
15
Googleā€™s DeepMind Health is working with University
College London Hospital (UCLH) to develop machine
learning algorithms capable of detecting differences in
healthy and cancerous tissues.
Smart Electronic Health Records
16
Artificial intelligence to help diagnosis, clinical
decisions, and personalized treatment
suggestions.
Handwriting recognition and transforming cursive or
other sketched handwriting into digitized characters.
Regulating Use in Digital Health
Products
17
Incomplete insight from US FDA for products utilizing AI.
Medical devices provisions of Federal Food, Drug and
Cosmetic Act-1970s
FDA created Digital Health Program tasked with
developing and implementing a new regulatory model for
digital health technology.
Over the last five years different guidelines like Mobile
Medical Applications Guidelines.
In Clinical Research
18
Cutting costs
Improving trial quality
Improving trial time by almost half
Finding biomarkers and gene signatures that cause
diseases
Recruiting trial patients in minutes
Reading volumes of text and data in seconds
On verse of discovering involving new diagnostic tools
and treatments for Alzimerā€™s disease, cancer, and other
chronic and terminalillness.
Conclusion
ā€¢ Machine learning, data analytics are reshaping human relations,
promoting the global economy and triggering societal and political
reforms on a world scale.
ā€¢ Those machine learning methods may perform differently, if non-
medical or non-healthcare datasets are processed or tested. However,
learning the machine learning methodologies is more important in
general big data science and cloud computing applications in
healthcare and pharmacovigilance data management.
ā€¢ These technologies should be included in the academic curriculum for
healthcare course, which are going to play crucial role in healthcare
system in coming future.
ā€¢ Students should be encouraged about the advances in various
technologies at graduation level.
19
References
20
BAksu, AParadkar; Quality by design approach: Application of
Artificial Intellegence Techniques of Tablets Manufactured by Direct
Compression; PharmsciTech; 2012;13(4); 1138-1146
JADimasi, RW Hansen; The price of innovation: new estimates of drug
development costs. JHealth Econ;2003;22(2);151-185
S Behjati and PS Tarpey; What is next generation sequencing?; Arch
Dis Child Pract Ed;2013; 98(6);236-238
https://doi.org/10.1080/23808993.2017.1380516
http://artint.info
http://www.fda.gov
http://www.clinicalinformaticsnews.com

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Machine learning in health data analytics and pharmacovigilance

  • 1. Machine Learning In Health Data Analytics And Pharmacovigilance 1
  • 2. Introduction ā€¢ Intelligence of machines and the branch of computer science which aims to create it. ā€¢ ā€œMachines will be capable, within 20 years, of doing any work a man can do.ā€ ā€“Herbert Simon, 1965(AI innovator) 2 Three Steps Three elements of machine learning Computers and programs Massive amount ofdata Sophisticated algorithms The Turing test High performanceparallel processors The Darmont Conference
  • 3. Pharmacovigilance ā€¢ The word ā€œPharmacovigilanceā€ was derived from the Greek literature ā€œpharmakonā€ (means drug) and the word ā€œvigilareā€ (means keep watch) in Latin. In 1961, the World Health Organization (WHO) has established the pharmacovigilance (PV) program in response to the thalidomide disaster, for global drug monitoring. ā€¢ Many rare adverse effects remain undetected due to a limited number of sampled individuals in a clinical trial; hence, it is necessary to monitor the drugs even after their release into the market. ā€¢ In this context, ā€œpharmacovigilanceā€ helps to collect, analyze, and disseminate adverse drug reaction reports collected during the post-marketing phase. 3
  • 4. Machine learning and pharmacovigilance ā€¢ Monitoring the scientific literature for adverse drug reactions (ADRs) is critical to maintaining drug safety, and there is no room for error. ā€¢ As regulations tighten, pharmacovigilance teams are seeking better strategies and methods for ensuring that all ADRs are identified in the most effective and efficient way possible. ā€¢ Machine learning has been doing great work on the automated extraction of ADRs from biomedical literature and FDA drug labels. ā€¢ As a part of outreach to the global pharmacovigilance community 4
  • 5. Health data analytics and pharmacovigilance 5
  • 6. Challenges for machine learning Reasoning, Problem Solving Knowledge representation Planning Learning Natural language processing Perception Motion manipulation Social Intelligence Creativity General Intelligence 6 Approaches Cybernetics Symbolic Statistical Integrating the approaches Applications Healthcare and Medicines Automotive Finance and economic Video Games Heavy Industries Robotics
  • 7. Machine learning in Healthcare Managing Medical Records and other data Doing repetitive jobs Treatment Design Digital Consultation Virtual Nurses Medication Management Drug Discovery Precision Medicine Healthcare Monitoring Healthcare SystemAnalysis 7
  • 8. CT Participant Identifier Connected Machines Dosage error Detection Fraud detection Adm. workflowAssistance Virtual Nurshingā€¦ Robot-assisted Surgery Cybersecurity Advance Image Diagnosis and Preliminary Diagnosis by using data analytics and machine learning. 8 estimated potential annual benefit for each application by 2026(in billon USD) 0 10 20 30 40 50 Estimated potential annual benefit for each application by 2026(in billon USD) Source: AccentureAnalysis Total= $150Billions
  • 9. Many big Pharmaceutical companies began investing in machine learning in order to develop better diagnostics or biomarkers, to identify drug targets and to design new drugs and products. Merck partnership with Numerate in March 2012 focusing on generating novel small molecule drug leads for unnamed cardiovascular disease target. In december, 2016 Pfizer and IBM announced partnership to accelerate drug discovery in immuno- oncology. Current Scenario 9
  • 10. Disease Identification 10 2015- Report by Pharmaceutical Research and Manufacturers of America- more than 800 drugs and vaccines are in trial phase to treat cancer. Googleā€™s DeepMind Health, announced multiple partnerships including some eye hospitals in which they are developing technology to address macular degeneration in agingeyes. Oxfordā€™s PivitalĀ® Predicting Response to Depression Treatment (PReDicT) project is aiming to produce commercially-available emotional test battery for use in clinical setting.
  • 11. Personalized Treatment 11 Micro biosensors and devices, mobile apps with more sophisticated health-measurement and remote monitoring capabilities; these data can further be used for R&D. DermCheck; app available in Google play store in which images are sent to dermatologists(human not machines)
  • 12. Drug Discovery/Manufacturing 12 From initial screening of drug compounds to predicted success rate based on biological factors. R&D discovery technology; next-generation sequencing. Previous experiments are used to train the model Optimization softwares (example:FormRules) Designing of the processes
  • 13. Clinical Trial Research 13 Machine learning- to shape, direct clinical trials Advanced predictive analysis in identifying candidates for clinical trials Remote monitoring and real time data access for increased safety; biological and other signals for any sign of harm or death to participants. Finding best sample sizes for increased efficiency; addressing and adapting to differences in sites for patient recruitments; using electronic medical records to reduce data errors.
  • 14. Epidemic Outbreak Prediction 14 To predict malaria outbreaks, from data like temperature, average monthly rainfall, total number of positive cases,etc. ProMED-mail is a internet based reporting program for monitoring emerging diseases and providing outbreak reports.
  • 15. Radiology and Radiotherapy 15 Googleā€™s DeepMind Health is working with University College London Hospital (UCLH) to develop machine learning algorithms capable of detecting differences in healthy and cancerous tissues.
  • 16. Smart Electronic Health Records 16 Artificial intelligence to help diagnosis, clinical decisions, and personalized treatment suggestions. Handwriting recognition and transforming cursive or other sketched handwriting into digitized characters.
  • 17. Regulating Use in Digital Health Products 17 Incomplete insight from US FDA for products utilizing AI. Medical devices provisions of Federal Food, Drug and Cosmetic Act-1970s FDA created Digital Health Program tasked with developing and implementing a new regulatory model for digital health technology. Over the last five years different guidelines like Mobile Medical Applications Guidelines.
  • 18. In Clinical Research 18 Cutting costs Improving trial quality Improving trial time by almost half Finding biomarkers and gene signatures that cause diseases Recruiting trial patients in minutes Reading volumes of text and data in seconds On verse of discovering involving new diagnostic tools and treatments for Alzimerā€™s disease, cancer, and other chronic and terminalillness.
  • 19. Conclusion ā€¢ Machine learning, data analytics are reshaping human relations, promoting the global economy and triggering societal and political reforms on a world scale. ā€¢ Those machine learning methods may perform differently, if non- medical or non-healthcare datasets are processed or tested. However, learning the machine learning methodologies is more important in general big data science and cloud computing applications in healthcare and pharmacovigilance data management. ā€¢ These technologies should be included in the academic curriculum for healthcare course, which are going to play crucial role in healthcare system in coming future. ā€¢ Students should be encouraged about the advances in various technologies at graduation level. 19
  • 20. References 20 BAksu, AParadkar; Quality by design approach: Application of Artificial Intellegence Techniques of Tablets Manufactured by Direct Compression; PharmsciTech; 2012;13(4); 1138-1146 JADimasi, RW Hansen; The price of innovation: new estimates of drug development costs. JHealth Econ;2003;22(2);151-185 S Behjati and PS Tarpey; What is next generation sequencing?; Arch Dis Child Pract Ed;2013; 98(6);236-238 https://doi.org/10.1080/23808993.2017.1380516 http://artint.info http://www.fda.gov http://www.clinicalinformaticsnews.com