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Laboratory Diagnosis of
Tuberculosis(TB)
MODERATOR – DR. ASHOK
PANCHONIA
Speaker – Dr. Gaurav Shelgaonkar
Mycobacteria Tuberculosis
 Non sporing, Non-capsulated. Weakly Gram Positive.
 Strongly Acid Fast (due to mycolic acid in cell wall).
 Lipid Rich Cell Wall (confers resistance to disinfectants,
detergents, common antibiotics and traditional stains).
 Long Generation time.
 Capable to grow intracellularly in unactivated alveolar
macrophages.
 Primarily disease caused from host response to infection.
 Humans are the only natural reservoir.
 Person to person transmission, by infectious aerosols/droplets.
Lin P et al. J Immunol 2010
Clearance
Pulmonary TB
Low grade TB
“percolating
“Dormant infection
Septic TB
Miliary TB
Extrapulmonary TB
LTBI
active
TB
Spectrum of M. tuberculosis infection
Magnitude of the Problem
Source: WHO Geneva; WHO Report 2008: Global Tuberculosis Control; Surveillance, Planning and Financing
Global annual incidence = 9.1 million
India annual incidence = 1.9 million
India is 17th
among 22
High Burden
Countries (in terms of
TB incidence rate)
Evolution of TB Control in India
 1950s-60s Important TB research at TRC and NTI
 1962 National TB Control Program (NTCP)
 1992 Program Review
 only 30% of patients diagnosed;
 of these, only 30% treated successfully
 1993 RNTCP pilot began
 1998 RNTCP scale-up
 2001 450 million population covered
 2004 >80% of country covered
 2006 Entire country covered by RNTCP
From robbins 9th
Edition
Pathogenesis
 Pneumonia
 Granuloma formation with fibrosis
 Caseous necrosis
• Tissue becomes dry & amorphous (resembling cheese)
• Mixture of protein & fat (assimilated very slowly)
 Calcification
• Ca++
salts deposited
 Cavity formation
• Center liquefies & empties into bronchi
Typical Progression of Pulmonary
Tuberculosis
From robbins 9th
Edition
From robbins 9th
Edition
From robbins 9th
Edition
Primary Pulmonary Tuberculosis
From robbins 9th
Edition
Secondary Pulmonary TB Miliary Tuberculosis
Haematology
 Complete Blood Count is usually Normal.
 Usually moderate Normochromic or slightly
hypochromic anemia.
 Anemia may be there due to the chronic
debiliting natureof the disease.
 Megaloblastic Anemia (Macrocytes in blood) in
cases of abdominal TB with malabsorption.
 Thrombocytosis may be seen.
 ESR & CRP are Raised.
Tubercular Lymphadenitis
Needle aspiration(FNAC) is a good test for TB
lymphadenitis in HIV-infected persons
 Can be done the same day in the health facility.
 Has a low rate of adverse effects.
 Has a high yield for diagnosing TB.
TB – Lymph Node
H&E MGG Stain
TB Meningitis
 Subacute or chronic
 Headache, fever, neck stiffness, decreasing mental
status
 Lumbar puncture essential for diagnosis
 CSF –
o clear or slightly turbid, forms fibrin coagulum on
standing.
o Raised white cell count (100-1000 lymp/ul)
o Elevated protein (>45mg/dl),
o Reduced glucose ( <50mg/dl)
Traditional Methods for
Diagnosis of Tuberculosis
Presumptive Definitive
1. Clinical
2. Radiological Isolation & Identification
3. AFB Microscopy of M. Tuberculosis
4. Tuberculin Test
5. Pathological
Mantoux Tuberculin Skin Test (TST)
 0.1 ml of tuberculin purified protein derivative (-
PPD) into inner surface of forearm intradermally.
Read between 48-72 hrs.
 A positive tuberculin skin test result is supportive
evidence in the diagnosis of TB in areas of low
prevalence (or no vaccination); however, a negative
tuberculin skin test result may occur in
approximately one third of patients.
PPD Tuberculosis Skin Test Criteria
 A Negative Test Result could result from the following:
(1) Anergy secondary to immunosuppression or malnourishment;
(2) Recent infection;
(3) Circulating mononuclear cells suppressing the specifically
sensitized circulating T-lymphocytes in the peripheral blood; or
(4) Sequestration of purified protein derivative specific reactive T-
lymphocyte.
However, results of a tuberculin skin test is repeated 6 to 8 weeks
later would usually be positive.
 False positive in Atypical mycobacterial infection and previous
BCG vaccination.
Role of Radiography
 Chest X-Ray (CXR) can support a diagnosis of PTB
 Not used routinely for follow-up
 PTB can exist with normal CXR
Must be interpreted with other information
 History and exam
 Sputum smear results
 Also useful in diagnosing other types of TB,
especially in bones, joints, and spine
Chest X-Ray of Patient with Active
Pulmonary Tuberculosis
Sputum Examination
CASE FINDING TOOLS
 Sputum examination -:- sputum smear examination by
direct microscopy is the method of choice.
Collection of sputum –
 Day 1 Sample 1 - Patient provide an “on the spot” sample
 Day 2 Sample 2 - Patient bring early morning sample.
Slide reporting
 The number of bacilli
seen in a smear reflects
disease severity &
patient infectivity.
 The table shows the
standard method of
reporting using 100X
magnification (WHO).
Number of bacilliNumber of bacilli ResultResult
reportedreported
NO AFB per 100 oilNO AFB per 100 oil
immersion fieldimmersion field
00
1-9 AFB per 100 oil1-9 AFB per 100 oil
immersion fieldimmersion field
ScantyScanty
10-99 AFB per 100 oil10-99 AFB per 100 oil
immersion fieldimmersion field
+ (1+)+ (1+)
1-10 AFB per oil1-10 AFB per oil
immersion fieldimmersion field
+ + (2+)+ + (2+)
>10 AFB per oil>10 AFB per oil
immersion fieldimmersion field
+ + + (3+)+ + + (3+)
Smear and Culture
Direct examination by Zeihl-Neelsen
staining requires bacillary densities of
5000-10,000/mL
Culture requires a minimum of 10 to 100
viable bacilli.
Lipid-Rich Cell Wall of Mycobacterium
Mycolic acids
CMN Group:
Unusual cell
wall lipids
(mycolic
acids,etc.)
Mycobacterium Tuberculosis Stained
with Fluorescent Dye
From Carl Zeiss microimaging GmbH (FluoLED)
Yellow bacilli with green background.
Mycobacterial Culture
Reasons to request mycobacterial culture:
• Patient previously on anti-TB treatment (Relapse,
Defaulter)
• Still smear-positive after intensive phase of treatment
or after finishing treatment
• Symptomatic and at high-risk of MDR-TB
• To test fluids potentially infected with M.
tuberculosis
• Investigation of patients who develop active PTB
during or after IPT.
• TB in health workers
Culture Based Methods
1. Liquid Culture (e.g., automated mycobacteria
growth indicator tube) – Faster and more sensitive
than solid media)
2. Microscopic Observation Drug Susceptibility
Testing (DST) – Yields fasterb culture and DST
results than do liquid or solid media and is
inexpensive(Requires Skilled Technician to interpret)
3. Thin Layer Agar Methodology (same as above)
4. Calorimetric DST methods using redox tetrazolium
slats, or a nitrate reductase assay – Lower cost, less
time (Potential Biohazard)
Eight Week Growth of Mycobacterium
tuberculosis on Lowenstein-Jensen Agar
 DST performed on all cultures
Tests for isoniazid, rifampicin, ethambutol, and
streptomycin
 If found to be multi-drug resistant, then send for
additional testing for susceptibility to second-line
medicines
TB Drug Susceptibility Testing
(DST)
BACTEC 460 TB System
(radiometric)
 Developed in 1969 by Deland and Wagner.
 Principle –
 BACTEC 12B vial, utilize 14C labeled substrate (Palmitic acid).
 On inoculation, mycobacteria, grow and release 14CO2.
 The BACTEC instrument measures quantitatively the
radioactivity on a scale ranging from 0-999, as GI (Growth
Indicator).
 The daiy increase in GI is proportional to growth in the medium.
 DST (Drug Susceptibility Test) – When ATT is introduced in
the medium, reduced production of 14CO2 & decrease in GI.
New Approach in Diagnosis of TB
Replication of M. Tuberculosis
1. Antigen Detection Tests –
 LAM ELISA Urinary Antigen Test(ELISA BASED TEST, detect
LAM, Antigen 85 – LipoArabinoMannon) still developing
 Sputum Antigen Test
2. Microscopic Visualization of bacteria –
LED Microscopy
Bleach Microscopy
3. Culture based Detection Tests –
Microscopic observation drug susceptibility assays (MODS)
Thin Layer Agar
Phage based tests
Calorimetric media
Replication of M. Tuberculosis
4. Nucleic Acid Amplification Tests (NAATs)-
LAMP
GeneXpert MTB
Transrenal DNA detection
Genotype MTBDRPlus
(High Specificity and Positive Predictive Value)
5. Volatile Organic Compounds (VOC) detection-
E-nose
Biosensors
(Emitted from the infected cells & released in exhaled breath through nanomaterial
biosensors or Gas Chromatography)
Immune Response to M. Tuberculosis
I. Cellular Immune Response -
INF-Y release assays(IGRA)
Quanti-FELON TB gold
T-SPOT TB
Rd ESAT-6 skin test
II. Humoral Immnune Response –
Antibody Detection Tests
Serological tests
New Approach in Diagnosis of TB
Polymerase Chain Reaction
 Polymerase chain reaction (PCR) is based on
amplification of mycobacterial DNA fragments.
 It can detect as few as 10 mycobacteria.
 Advantages of PCR include rapid diagnosis,
improved specificity and sensitivity, and no
requirement of intact immunity.
Molecular Beacon Assay(at MDL)
 Target: DNA
 Realtime PCR
PCR to amplify target sequences
At the same time, Molecular beacon probes are used to
detect INH and RIF resistance mutations.
2 MBs for INH (targeting katG & inhA)
3 MBs for RIF (targeting core of rpoB)
Real-Time PCR
 2 components
 PCR to amplify target sequences.
 A system to monitor PCR product.
Fluorophore-labeled probes
An optical device to detect
fluorescence
Software to record data
 No post-PCR manipulations
 Fast
when PCR is done, results are ready
for interpretation.
 No amplicon contaminations
iCycler
IQ5
What is a Molecular Beacon?
←Loop (15-30 nt)
←Stem (5-7 nt)
Fluorophore→ ←Quencher
Hair-pin structure
Molecular
Beacon (off)
Hybrid (Molecular Beacon - On)
Detection of Mutations with a Molecular Beacon
(Loop portion containing wildtype SQ)
Mutant Sequence
Wildtype Sequence
Amplicon
Heat Light
+
Courtesy of Dr. Probert
Loop
QuencherFluorophore
Fluorophore
An Example of a Good MB
No mutations,
Susceptible
Mutant,
Resistant
R
F
U
Threshold
 Causes of false-positive results include DNA
contamination or presence of nonviable
organisms
 The disadvantages of PCR include high cost,
risk of contamination, and the technology
involved in the procedure does not permit routine
diagnostic use at present.
55Limitations
 Limited genes & sites are targeted.
• Some mutations are not detected.
 Emerging resistance in mixed populations may not be
detected.
 Some mutations do not confer resistance.
• Rare occurring, but lead to wrong interpretation.
• Silent mutation in rpoB: codon 514.
• Not a silent mutation but only cause little change in MIC.
 Available for INH and RIF only.
 New MBs for other drugs not developed yet.
 Phenotypic drug susceptibility testing is still needed.
GeneXpert Automated System at
MYH, Indore Resp. Medicine
(TCD) Department and TB
Hospital
CBNAAT Report
Line Probe Assays
 Target: DNA
 Traditional PCR (not realtime)
 Amplify target sequences.
 Reverse hybridization
 Amplicons hybridize to probes immobilized on membrane
(strip).
 Colorimetric detection of captured amplicons on strip.
 Observation of bands. One probe for one band.
60Line Probes
 Hybridization and colorimetric detection
Amplicons bind to probes Color reaction to form bands
61
Conjugate ctrl
rpoB wild-type,
5 segments
4 rpoB mutations
rpoB universal ctrl
MTBDR by HAIN Lifescience LiPA RIF.TB by
INNOGENETICS
katG universal ctrl
katG wild-type
2 katG mutations
Universal ctrl
MTBC
516
526
531
315
marker line
MTBC
More probes are added in MTBDRsl to detected 2nd
-line drug R-mutations.
63
Line Probes Features
 Many controls; more objective
 MTBDRsl (HAIN) added embB, gyrA, rrs (screen for
XDR).
 Exact mutations are available for most prevalent
mutations only.
 Some mutations are detected by lacking bands in wild-
type sequences.
 Emerging resistance in mixed populations may not be
detected.
 Phenotypic drug susceptibility testing is still needed.
Loop Mediated Isothermal
Amplification(LAMP)of DNA
 Small Heating Device
 Runs at High Temperature(avoids nonspecific amplifications)
 Multiple primers sets (increased specificity and speed)
 Direct from Sputum.
 Closed System (No risk of contamination)
 Minimal instrumentation
 Fast (Less than 2hrs total)
 Visual Detection(no instrumentation- Mg2P2O7 ppt - white)
 Test Under Development still…….
Cytokine Assays
T- cell Interferon-Gamma Release Assay (IGRA)
INF- y produced by T-lymphocytes, is capable of
activating macrophages, increasing their bactericidal
capacity against M tuberculosis and is involved in
granuloma formation.
Elevated concentrations of INF-y in TB is related to
increased production at the disease site by effectors T
cells.
The sensitivity of an elevated level varies from 78 to
100% and specificity from 95 to 100%
 IGRA is useful in targeted strategy for latent TB
infection(LTBI) detection in low TB incidence settings
 More specific than Tuberculin Skin Test
 Can’t distinguish active from treated TB or LTBI.
 False positive results in-
Hematologic malignancies
Empyema.
 Note :- Immunosuppressed patients (HIV or after renal
transplant) had INF- Y levels similar to immunocompetent
individuals retaining its efficacy as a diagnostic test
Methods for detection of IFN-y
Two new blood tests
1. T-SPOT.TB [Oxford Immunec] – directly count the no of
IFN-y secreting T cells.
2. QuantiFERON-TB Gold [Cellestis Limited] –
measures the concentration of IFNy secretion.
Both tests based on detection of IFN-y in blood have been found to be more accurate than the
tuberculin skin test in the diagnosis of latent TB infection. Future research should focus on
the potential efficacy of quantification of specifically activated lymphocytes in body fluid
and blood using IFN-Y release assay in the diagnosis of TB.
Immunodiagnosis
 Serological tests are simple to perform & can be developed
into a rapid method for wide screening.
Immuno- chromatographic card test –
 Sensitivity 80 % & specificity 88 %.
 Principle - the test employs antihuman Ig-G, A, M antibody
rabbit dye conjugate highly purified antigen A60 from
Mycobacterium bovis stain BCG (cell culture), fixed in the
test line, & anti-rabbit antibodies in the control line. As the
sample flows through the absorbent pad, human
immunoglobulins are bound by the antihuman Ig- dye
conjugates to form an immunocomplex. This binds to the
A60 proteins in the test line & produce a red violet test
line, if the anti- Tb antibodies were present in the sample.
In control line excess conjugate react with the anti rabbit
antibodies forming second red violet line to demonstrate the
correct function of the reagent.
Cytokines:
 Significantly higher levels of IL-6 have been
demonstrated in TB (A Potent
Biomarker/Biosignature).
 Furthermore, the serum/pleural fluid IL-6 ratio was
significantly higher in TB.
 IL-1b and Tumor necrosis factor(TNFa), produced
predominantly by mononuclear phagocytes, have been
shown to be present in TB.
 Levels of soluble IL-2 receptors, IL-18,
immunosuppressive acidic protein, and IL-12p40 are all
significantly elevated in TB
Adenosine DeAminase (ADA) in
Pleural Fluid
 ADA levels in Pleural fluid are measured by
colorimetric method.
 Increased ADA levels (>36IU/L) observed in
Tubercular Pleural Effusion.
 Quick test.
 Adjunct test to help rule in or rule out tuberculosis in
pleural fluid.
Lysozyme
 Lysozyme, a bacteriolytic enzyme, have been
found to be higher in patients with TB.
 However, a fluid to serum lysozyme ratio > 1.2 has
been found to be a better tool for the diagnosis of
TB.
Conclusion
 Newer Technologies offer a significant time savings. However
these tests have limitations –
1. Costly.
2. Complex & Cumbersome.
3. Only smear positive (50% of culture positives)
4. Recommended only in special cases.
5. Add-on tests.
 Culture is still the Gold Standard.
As recommended by CDC/WHO
* Whenever possible, use liquid culture & DST.
* Rapid testing and reporting essential for TB control.
Progress in TB Diagnosis
Past Present
Koch discovered tubercle bacillus 133
yrs back
No major discovery
Except TB Genome, IS6110, BACTEC
460 (liquid media)
TB diagnosed by symptoms - prehistoric Still the same practice in many High
Bruden Countries (HBCs)
Tuberculin test - > 100yrs Still Commonly used
Egg based media –almost 100yrs Still most commonly used
AFB Smear for diagnosis – 133 yrs back Still the major diagnostic tool in many
countries
Radiological Diagnosis Still Important (X-ray, CT Scan)
TB CowBoys
Thank You!

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Laboratory diagnosis of Tuberculosis gs

  • 1. Laboratory Diagnosis of Tuberculosis(TB) MODERATOR – DR. ASHOK PANCHONIA Speaker – Dr. Gaurav Shelgaonkar
  • 2.
  • 3. Mycobacteria Tuberculosis  Non sporing, Non-capsulated. Weakly Gram Positive.  Strongly Acid Fast (due to mycolic acid in cell wall).  Lipid Rich Cell Wall (confers resistance to disinfectants, detergents, common antibiotics and traditional stains).  Long Generation time.  Capable to grow intracellularly in unactivated alveolar macrophages.  Primarily disease caused from host response to infection.  Humans are the only natural reservoir.  Person to person transmission, by infectious aerosols/droplets.
  • 4. Lin P et al. J Immunol 2010 Clearance Pulmonary TB Low grade TB “percolating “Dormant infection Septic TB Miliary TB Extrapulmonary TB LTBI active TB Spectrum of M. tuberculosis infection
  • 5. Magnitude of the Problem Source: WHO Geneva; WHO Report 2008: Global Tuberculosis Control; Surveillance, Planning and Financing Global annual incidence = 9.1 million India annual incidence = 1.9 million India is 17th among 22 High Burden Countries (in terms of TB incidence rate)
  • 6. Evolution of TB Control in India  1950s-60s Important TB research at TRC and NTI  1962 National TB Control Program (NTCP)  1992 Program Review  only 30% of patients diagnosed;  of these, only 30% treated successfully  1993 RNTCP pilot began  1998 RNTCP scale-up  2001 450 million population covered  2004 >80% of country covered  2006 Entire country covered by RNTCP
  • 8.  Pneumonia  Granuloma formation with fibrosis  Caseous necrosis • Tissue becomes dry & amorphous (resembling cheese) • Mixture of protein & fat (assimilated very slowly)  Calcification • Ca++ salts deposited  Cavity formation • Center liquefies & empties into bronchi Typical Progression of Pulmonary Tuberculosis
  • 11. From robbins 9th Edition Primary Pulmonary Tuberculosis
  • 12.
  • 13.
  • 14. From robbins 9th Edition Secondary Pulmonary TB Miliary Tuberculosis
  • 15.
  • 16. Haematology  Complete Blood Count is usually Normal.  Usually moderate Normochromic or slightly hypochromic anemia.  Anemia may be there due to the chronic debiliting natureof the disease.  Megaloblastic Anemia (Macrocytes in blood) in cases of abdominal TB with malabsorption.  Thrombocytosis may be seen.  ESR & CRP are Raised.
  • 17. Tubercular Lymphadenitis Needle aspiration(FNAC) is a good test for TB lymphadenitis in HIV-infected persons  Can be done the same day in the health facility.  Has a low rate of adverse effects.  Has a high yield for diagnosing TB.
  • 18. TB – Lymph Node H&E MGG Stain
  • 19. TB Meningitis  Subacute or chronic  Headache, fever, neck stiffness, decreasing mental status  Lumbar puncture essential for diagnosis  CSF – o clear or slightly turbid, forms fibrin coagulum on standing. o Raised white cell count (100-1000 lymp/ul) o Elevated protein (>45mg/dl), o Reduced glucose ( <50mg/dl)
  • 20. Traditional Methods for Diagnosis of Tuberculosis Presumptive Definitive 1. Clinical 2. Radiological Isolation & Identification 3. AFB Microscopy of M. Tuberculosis 4. Tuberculin Test 5. Pathological
  • 21. Mantoux Tuberculin Skin Test (TST)  0.1 ml of tuberculin purified protein derivative (- PPD) into inner surface of forearm intradermally. Read between 48-72 hrs.  A positive tuberculin skin test result is supportive evidence in the diagnosis of TB in areas of low prevalence (or no vaccination); however, a negative tuberculin skin test result may occur in approximately one third of patients.
  • 22.
  • 23. PPD Tuberculosis Skin Test Criteria
  • 24.  A Negative Test Result could result from the following: (1) Anergy secondary to immunosuppression or malnourishment; (2) Recent infection; (3) Circulating mononuclear cells suppressing the specifically sensitized circulating T-lymphocytes in the peripheral blood; or (4) Sequestration of purified protein derivative specific reactive T- lymphocyte. However, results of a tuberculin skin test is repeated 6 to 8 weeks later would usually be positive.  False positive in Atypical mycobacterial infection and previous BCG vaccination.
  • 25. Role of Radiography  Chest X-Ray (CXR) can support a diagnosis of PTB  Not used routinely for follow-up  PTB can exist with normal CXR Must be interpreted with other information  History and exam  Sputum smear results  Also useful in diagnosing other types of TB, especially in bones, joints, and spine
  • 26. Chest X-Ray of Patient with Active Pulmonary Tuberculosis
  • 27.
  • 28. Sputum Examination CASE FINDING TOOLS  Sputum examination -:- sputum smear examination by direct microscopy is the method of choice. Collection of sputum –  Day 1 Sample 1 - Patient provide an “on the spot” sample  Day 2 Sample 2 - Patient bring early morning sample.
  • 29.
  • 30. Slide reporting  The number of bacilli seen in a smear reflects disease severity & patient infectivity.  The table shows the standard method of reporting using 100X magnification (WHO). Number of bacilliNumber of bacilli ResultResult reportedreported NO AFB per 100 oilNO AFB per 100 oil immersion fieldimmersion field 00 1-9 AFB per 100 oil1-9 AFB per 100 oil immersion fieldimmersion field ScantyScanty 10-99 AFB per 100 oil10-99 AFB per 100 oil immersion fieldimmersion field + (1+)+ (1+) 1-10 AFB per oil1-10 AFB per oil immersion fieldimmersion field + + (2+)+ + (2+) >10 AFB per oil>10 AFB per oil immersion fieldimmersion field + + + (3+)+ + + (3+)
  • 31. Smear and Culture Direct examination by Zeihl-Neelsen staining requires bacillary densities of 5000-10,000/mL Culture requires a minimum of 10 to 100 viable bacilli.
  • 32. Lipid-Rich Cell Wall of Mycobacterium Mycolic acids CMN Group: Unusual cell wall lipids (mycolic acids,etc.)
  • 33.
  • 34.
  • 35. Mycobacterium Tuberculosis Stained with Fluorescent Dye From Carl Zeiss microimaging GmbH (FluoLED) Yellow bacilli with green background.
  • 36. Mycobacterial Culture Reasons to request mycobacterial culture: • Patient previously on anti-TB treatment (Relapse, Defaulter) • Still smear-positive after intensive phase of treatment or after finishing treatment • Symptomatic and at high-risk of MDR-TB • To test fluids potentially infected with M. tuberculosis • Investigation of patients who develop active PTB during or after IPT. • TB in health workers
  • 37. Culture Based Methods 1. Liquid Culture (e.g., automated mycobacteria growth indicator tube) – Faster and more sensitive than solid media) 2. Microscopic Observation Drug Susceptibility Testing (DST) – Yields fasterb culture and DST results than do liquid or solid media and is inexpensive(Requires Skilled Technician to interpret) 3. Thin Layer Agar Methodology (same as above) 4. Calorimetric DST methods using redox tetrazolium slats, or a nitrate reductase assay – Lower cost, less time (Potential Biohazard)
  • 38.
  • 39. Eight Week Growth of Mycobacterium tuberculosis on Lowenstein-Jensen Agar
  • 40.
  • 41.  DST performed on all cultures Tests for isoniazid, rifampicin, ethambutol, and streptomycin  If found to be multi-drug resistant, then send for additional testing for susceptibility to second-line medicines TB Drug Susceptibility Testing (DST)
  • 42. BACTEC 460 TB System (radiometric)  Developed in 1969 by Deland and Wagner.  Principle –  BACTEC 12B vial, utilize 14C labeled substrate (Palmitic acid).  On inoculation, mycobacteria, grow and release 14CO2.  The BACTEC instrument measures quantitatively the radioactivity on a scale ranging from 0-999, as GI (Growth Indicator).  The daiy increase in GI is proportional to growth in the medium.  DST (Drug Susceptibility Test) – When ATT is introduced in the medium, reduced production of 14CO2 & decrease in GI.
  • 43.
  • 44. New Approach in Diagnosis of TB Replication of M. Tuberculosis 1. Antigen Detection Tests –  LAM ELISA Urinary Antigen Test(ELISA BASED TEST, detect LAM, Antigen 85 – LipoArabinoMannon) still developing  Sputum Antigen Test 2. Microscopic Visualization of bacteria – LED Microscopy Bleach Microscopy 3. Culture based Detection Tests – Microscopic observation drug susceptibility assays (MODS) Thin Layer Agar Phage based tests Calorimetric media
  • 45. Replication of M. Tuberculosis 4. Nucleic Acid Amplification Tests (NAATs)- LAMP GeneXpert MTB Transrenal DNA detection Genotype MTBDRPlus (High Specificity and Positive Predictive Value) 5. Volatile Organic Compounds (VOC) detection- E-nose Biosensors (Emitted from the infected cells & released in exhaled breath through nanomaterial biosensors or Gas Chromatography)
  • 46. Immune Response to M. Tuberculosis I. Cellular Immune Response - INF-Y release assays(IGRA) Quanti-FELON TB gold T-SPOT TB Rd ESAT-6 skin test II. Humoral Immnune Response – Antibody Detection Tests Serological tests New Approach in Diagnosis of TB
  • 47. Polymerase Chain Reaction  Polymerase chain reaction (PCR) is based on amplification of mycobacterial DNA fragments.  It can detect as few as 10 mycobacteria.  Advantages of PCR include rapid diagnosis, improved specificity and sensitivity, and no requirement of intact immunity.
  • 48. Molecular Beacon Assay(at MDL)  Target: DNA  Realtime PCR PCR to amplify target sequences At the same time, Molecular beacon probes are used to detect INH and RIF resistance mutations. 2 MBs for INH (targeting katG & inhA) 3 MBs for RIF (targeting core of rpoB)
  • 49. Real-Time PCR  2 components  PCR to amplify target sequences.  A system to monitor PCR product. Fluorophore-labeled probes An optical device to detect fluorescence Software to record data  No post-PCR manipulations  Fast when PCR is done, results are ready for interpretation.  No amplicon contaminations iCycler IQ5
  • 50. What is a Molecular Beacon? ←Loop (15-30 nt) ←Stem (5-7 nt) Fluorophore→ ←Quencher Hair-pin structure
  • 51. Molecular Beacon (off) Hybrid (Molecular Beacon - On) Detection of Mutations with a Molecular Beacon (Loop portion containing wildtype SQ) Mutant Sequence Wildtype Sequence Amplicon Heat Light + Courtesy of Dr. Probert Loop QuencherFluorophore Fluorophore
  • 52. An Example of a Good MB No mutations, Susceptible Mutant, Resistant R F U Threshold
  • 53.  Causes of false-positive results include DNA contamination or presence of nonviable organisms  The disadvantages of PCR include high cost, risk of contamination, and the technology involved in the procedure does not permit routine diagnostic use at present.
  • 54. 55Limitations  Limited genes & sites are targeted. • Some mutations are not detected.  Emerging resistance in mixed populations may not be detected.  Some mutations do not confer resistance. • Rare occurring, but lead to wrong interpretation. • Silent mutation in rpoB: codon 514. • Not a silent mutation but only cause little change in MIC.  Available for INH and RIF only.  New MBs for other drugs not developed yet.  Phenotypic drug susceptibility testing is still needed.
  • 55.
  • 56. GeneXpert Automated System at MYH, Indore Resp. Medicine (TCD) Department and TB Hospital
  • 58. Line Probe Assays  Target: DNA  Traditional PCR (not realtime)  Amplify target sequences.  Reverse hybridization  Amplicons hybridize to probes immobilized on membrane (strip).  Colorimetric detection of captured amplicons on strip.  Observation of bands. One probe for one band.
  • 59. 60Line Probes  Hybridization and colorimetric detection Amplicons bind to probes Color reaction to form bands
  • 60. 61 Conjugate ctrl rpoB wild-type, 5 segments 4 rpoB mutations rpoB universal ctrl MTBDR by HAIN Lifescience LiPA RIF.TB by INNOGENETICS katG universal ctrl katG wild-type 2 katG mutations Universal ctrl MTBC 516 526 531 315 marker line MTBC More probes are added in MTBDRsl to detected 2nd -line drug R-mutations.
  • 61.
  • 62. 63 Line Probes Features  Many controls; more objective  MTBDRsl (HAIN) added embB, gyrA, rrs (screen for XDR).  Exact mutations are available for most prevalent mutations only.  Some mutations are detected by lacking bands in wild- type sequences.  Emerging resistance in mixed populations may not be detected.  Phenotypic drug susceptibility testing is still needed.
  • 63. Loop Mediated Isothermal Amplification(LAMP)of DNA  Small Heating Device  Runs at High Temperature(avoids nonspecific amplifications)  Multiple primers sets (increased specificity and speed)  Direct from Sputum.  Closed System (No risk of contamination)  Minimal instrumentation  Fast (Less than 2hrs total)  Visual Detection(no instrumentation- Mg2P2O7 ppt - white)  Test Under Development still…….
  • 64.
  • 65. Cytokine Assays T- cell Interferon-Gamma Release Assay (IGRA) INF- y produced by T-lymphocytes, is capable of activating macrophages, increasing their bactericidal capacity against M tuberculosis and is involved in granuloma formation. Elevated concentrations of INF-y in TB is related to increased production at the disease site by effectors T cells. The sensitivity of an elevated level varies from 78 to 100% and specificity from 95 to 100%
  • 66.  IGRA is useful in targeted strategy for latent TB infection(LTBI) detection in low TB incidence settings  More specific than Tuberculin Skin Test  Can’t distinguish active from treated TB or LTBI.  False positive results in- Hematologic malignancies Empyema.  Note :- Immunosuppressed patients (HIV or after renal transplant) had INF- Y levels similar to immunocompetent individuals retaining its efficacy as a diagnostic test
  • 67. Methods for detection of IFN-y Two new blood tests 1. T-SPOT.TB [Oxford Immunec] – directly count the no of IFN-y secreting T cells. 2. QuantiFERON-TB Gold [Cellestis Limited] – measures the concentration of IFNy secretion. Both tests based on detection of IFN-y in blood have been found to be more accurate than the tuberculin skin test in the diagnosis of latent TB infection. Future research should focus on the potential efficacy of quantification of specifically activated lymphocytes in body fluid and blood using IFN-Y release assay in the diagnosis of TB.
  • 68.
  • 69. Immunodiagnosis  Serological tests are simple to perform & can be developed into a rapid method for wide screening. Immuno- chromatographic card test –  Sensitivity 80 % & specificity 88 %.  Principle - the test employs antihuman Ig-G, A, M antibody rabbit dye conjugate highly purified antigen A60 from Mycobacterium bovis stain BCG (cell culture), fixed in the test line, & anti-rabbit antibodies in the control line. As the sample flows through the absorbent pad, human immunoglobulins are bound by the antihuman Ig- dye conjugates to form an immunocomplex. This binds to the A60 proteins in the test line & produce a red violet test line, if the anti- Tb antibodies were present in the sample. In control line excess conjugate react with the anti rabbit antibodies forming second red violet line to demonstrate the correct function of the reagent.
  • 70. Cytokines:  Significantly higher levels of IL-6 have been demonstrated in TB (A Potent Biomarker/Biosignature).  Furthermore, the serum/pleural fluid IL-6 ratio was significantly higher in TB.  IL-1b and Tumor necrosis factor(TNFa), produced predominantly by mononuclear phagocytes, have been shown to be present in TB.  Levels of soluble IL-2 receptors, IL-18, immunosuppressive acidic protein, and IL-12p40 are all significantly elevated in TB
  • 71. Adenosine DeAminase (ADA) in Pleural Fluid  ADA levels in Pleural fluid are measured by colorimetric method.  Increased ADA levels (>36IU/L) observed in Tubercular Pleural Effusion.  Quick test.  Adjunct test to help rule in or rule out tuberculosis in pleural fluid.
  • 72.
  • 73. Lysozyme  Lysozyme, a bacteriolytic enzyme, have been found to be higher in patients with TB.  However, a fluid to serum lysozyme ratio > 1.2 has been found to be a better tool for the diagnosis of TB.
  • 74. Conclusion  Newer Technologies offer a significant time savings. However these tests have limitations – 1. Costly. 2. Complex & Cumbersome. 3. Only smear positive (50% of culture positives) 4. Recommended only in special cases. 5. Add-on tests.  Culture is still the Gold Standard. As recommended by CDC/WHO * Whenever possible, use liquid culture & DST. * Rapid testing and reporting essential for TB control.
  • 75. Progress in TB Diagnosis Past Present Koch discovered tubercle bacillus 133 yrs back No major discovery Except TB Genome, IS6110, BACTEC 460 (liquid media) TB diagnosed by symptoms - prehistoric Still the same practice in many High Bruden Countries (HBCs) Tuberculin test - > 100yrs Still Commonly used Egg based media –almost 100yrs Still most commonly used AFB Smear for diagnosis – 133 yrs back Still the major diagnostic tool in many countries Radiological Diagnosis Still Important (X-ray, CT Scan)

Editor's Notes

  1. Earlier known as Consumption (severe wt loss)/ phthisis pulmonaris and the white plaque( extreme pallor in infected) . Pott’s disease (Egyptian mummies spinal tb) by archaeologist.
  2. Mycobacterium tubercule bacilli demonstrated by Robert Koch(coke) in 1882. (Koch’s bacilli)—Nobel prize 1905. Every third person is infected.
  3. Generation time is simply the time it takes for one cell to become two. M. Tb is slow growing, a nonchromogen, doesn’t grow at 25c or in PNB medium.
  4. Follows iceberg phemomenon.. As only tip of iceberg is visible.. Part below the iceberg indicates a lot of dormant infection in individuals, requiring urgent need of screening clinical findings and investigations for finding the dormant infections
  5. In 2008 WHO report-9.4 million new cases equivalents to 139 cases per 100,000 population of TB globally. 1.98 million were estimated to have occurred in India (0.87 million---infectious cases, fifth of the global burden of TB. About 40% of Indian population is infected with TB bacillus.
  6. TRC- Tuberculosis research Centre, Chennai NTI – National Tuberculosis Institute, Bengalaru Still a third of world’s population has been exposed so called THE CAPTAIN OF ALL MEN OF DEATH(19TH century)
  7. Red Arrow – GW parenchymal focus under the pleura(lower part – upper lobe) Blue Arrow – Hilar lymph nodes with caseation
  8. Characteristic Tubercle (Central granular caseation surrounded by epitheloid and MN giant cells) at - Lower Magnification Higher Magnification
  9. C. Tubercular Granuloma in Immunocompromised patient with no central caseation D. Sheets of foamy macrophages packed with mycobacteria.
  10. Upper parts of both lungs are riddled with GW areas of caseation and multiple areas of softening and cavitation. Cut surface show numerous GW to GY tubercles.
  11. Isoniazid may cause sideroblastic anemia showing hypochromic microcytes to normochromic macrocytes, often with few stippled red cells. Thrombocytosis due to increase no of small megakaryocytes in the marrow. ESR depends more on amount of fibrinogen than the amount of globulins present in the plasma.
  12. TB is the most common cause of adenopathy among HIV-infected patients in sub-Saharan Africa. When biopsy is necessary, excisional biopsy is preferred because incisional biopsies in the setting of TB carry a high risk for poor wound healing and/or chronic fistula formation
  13. Epithelioid histiocytes (Epithelioid cells) are activated macrophages resembling epithelial cells: elongated, with finely granular, pale eosinophilic (pink) cytoplasm and central, ovoid nucleus (oval or elongate), which is less dense than that of a lymphocyte. They have indistinct shape contour, often appear to merge into one another and can form aggregates known as giant cells.
  14. The test for cryptococcal meningitis is Indian Ink stain Pleural or pericardial fluids are not very sensitive samples for the detection of M. tuberculosis.
  15. Tuberculosis bacilli is a great IMITATOR &amp; may simulate many other diseases like sarcoidosis, pneumoconiosis, neoplasms, lung abscess and fungal infection.
  16. Only the induration which is hard, dense raised formation is measured. Erythema area is not measured.
  17. Disseminated TB have negative mantoux b/c of release of large amount of tuberculoproteins from endogenous lesions maskinh Hypersensitivity rxn. Anergy d/t sarcoidosis, viral, hodgkins ds, fulminant tb
  18. Radiography has more than 90% sensitivity but only 65-70% specificity for detecting PTB. A chest x-ray is an important tool in supporting the diagnosis of PTB in symptomatic individuals whose sputum smears are negative for AFB but it is not possible to diagnose PB using chest x-rays only. Therefore, always request sputum smear examination for all TB suspects.
  19. Roentgen discovered Xray in 1895 (Nobel prize in 1901) Radiographic appearances suggestive of active TB: Shadows in one or both upper zones. Cavities in one or both upper zones. Miliary pattern. Persistent shadows after pneumonia treatment. Pleural effusion. Intrathoracic adenopathy. Pericardial effusion A combination of any of the above, especially in HIV-infected patients Earlier by fluoroscopy without film. Later with Xray films(around 1935s)
  20. CT by Godrey in 1972(Nobel prize in 1979) Later HRCT developed
  21. Because increment yields from sputum specimens are small, WHO recommends examining 2 smears(workload less, less time diagnosis, drop out less) A Minimum 5.0 ml of Sputum Improves the Sensitivity of Acid-fast Smear for Mycobacterium tuberculosis
  22. ZN Technique 5min heated stain till cooling. Wash with clean water.5min for acid alcohol..1-2min for methylene blue.. Processing of sputum – use of NaOH 40g/L then centrifugation(18-23% more sensitive).
  23. Scanty may be due to contamination from tap water/deionized water. Never write negative.. Report as NO AFB SEEN
  24. Cant reliably distinguish MTB from NTM
  25. Red,straight slightly curved rods occurring singly or in small groups.. may appear beaded..
  26. Fluorescence microscopy is 10% more sensitive than conventional microscopy. Used to determine viability of M.Tb (auramine O stained) in follow up sputum specimens to treatment failure. LED(light-emitting diode) light source used. Cheaper, last longer.Attractive alternative to mercury vapour lamps. Hazards of dye toxicity.
  27. LJ egg medium – protein enriched media with optimum temp of 35-37c. LJ is an egg based media with addition of salts, 5% glyecerol and Malachite green.
  28. With the Lowenstein-Jensen (L-J) method, a positive result (growth of mycobacteria) is usually apparent after three weeks. If there is no growth by 8 weeks, the result is negative. Approximately 4 weeks from receipt of specimen to culture results An additional 3-4 weeks for susceptibility results Therefore minimum of 7-8 weeks for DST results (Botswana National Tuberculosis Programme Manual, page 33-34)
  29. Raised, dry cream (aka buff,rough and tough) coloured colonies. Visible colonies are usually produced –weeks after incubation but culture should be incubated for upto 6weeks before being discarded. Nitrate reduction and niacin production are definitive for M.tb
  30. DST is a routine performed on all positive cultures MDR = specimen shown to be resistant to isoniazid AND rifampicin +/- any other drugs
  31. Specimens are cultured in Mycobacteria Growth Indicator tube (MGIT) with liquid media (Middle brook7H9 broth base) containing C14 labelled palmitic acid, OADC enrichment and PANTA antibiotic mixture.
  32. Specially designed to accommodate Mycobacteria Growth Indicator Tube and incubate them at 37c.Scans tubes every 60min for increased fluorescence. CONTINUOUS MONITORING BLOOD CULTURING INSTRUMENTS. MGIT 960 is a nonradimeteric system.
  33. Antigen detection tests are almost absolute now
  34. CBNAATs used in MYH. LAMP – Loop Mediated Isothermal Amplification of DNA (Phenotypic)Fast Plaque TB principle – mycobacteriophage based assay. Detects only live bacteria.
  35. Immunochromatographic tests (Serological test) are absolute now.
  36. Molecular beacon test goes beyond what MTD &amp; Amplicor can offer. It provides Identification of MTB and drug susceptibility of INH and RIF. There is tremendous impact on TB patient management and control. I will discuss this in detail on the 2nd part of my talk.
  37. Bought a backup iCycler, newer version, named iQ5.
  38. MB is an oligonucleotide probe with a hair-pin or loop-and-stem structure. When the MB is at “rest”, the fluorophore is at the close proximity of the quencher, therefore, it is not emitting fluorescence. When the MB is in “action”, that is, when the target is 100% complementary to MB loop SQ, the MB will undergo a conformational change, from hairpin to linear structure, and hybridizes to its target. The conformational change forces the fluorophore away from the quencher and therefore, fluorescence will be emitted. This structure creates a competition for annealing between the arms and between the MB and the target SQ. The MB loses its competition when mismatches exist between its loop and the target. This unique property renders MB a great discriminary power to detect a single-nucleotide mismatch.
  39. Identify the bacilli while simultaneously identify drug resistamt strains by detecting the most common Single Nucleotide Polymorphisms(SNPs) associated with resistance.
  40. Marketed as TB Gold.. Low specificity of IGRA and consequent unnecessary t/t. WHO discouraged this test in developing countries.
  41. IGRA discontinued after 2012 as it cant differentiate Active from latent tb.
  42. Absolute now
  43. LAM in cell wall of M.Tb induce IL-6. IL-6 is the most potent stimulator for hepatic synthesis of CRP which also has thrombopoietic activity.
  44. ADA is an enzyme involved in purine metabolism. Asso with greater lymphocyte proliferation. &amp;gt;100IU/L is exclusively seen in tubercular pleural effusion. ADA needed for breakdown of adenosine from food and for the turnover of nucleic acids in tissues.
  45. Tulip Diagnostic ADA kit in MYH
  46.  IHC with an antibody to MPT64, a secreted antigen specific to the M. tuberculosiscomplex, is a specific and sensitive technique for diagnosis of EPTB.
  47. We are still in need of a costeffective, handy and accurate test for the diagnosis of latent tb cases. GeneXpert gave a hope.. Awaiting for even better technologies..