This study investigated the effects of problem-based learning (PBL) on elementary students' higher-order thinking skills in science education. The study used a pretest-posttest control group design with two 6th-grade classes, with one taught using PBL (experimental group) and the other using traditional methods (control group). Results showed the experimental group scored higher on tests of comprehension, problem-solving, and science process skills after PBL instruction compared to traditional instruction. Therefore, PBL appears to more effectively improve cognitive outcomes and higher-order thinking skills in elementary science education.