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Seminar on
How to deal with a journal rejection?
‫المصرية‬ ‫البحثية‬ ‫العلمية‬ ‫المجموعة‬ ‫ورئيس‬ ‫مؤسس‬
‫أ‬‫والمعلومات‬ ‫الحاسبات‬ ‫بكلية‬ ‫ستاذ‬–‫القاهرة‬ ‫جامعة‬
‫ا‬‫أل‬‫الدكتور‬ ‫ستاذ‬/‫حسنين‬ ‫عطيفى‬ ‫أبوالعال‬
‫الموافق‬ ‫السبت‬11‫مارس‬2017
‫ظهرا‬ ‫عشر‬ ‫الثانية‬ ‫الساعة‬
‫رسمى‬ ‫حسن‬ ‫محمد‬ ‫الدكتور‬ ‫االستاذ‬ ‫مدرج‬
‫والمعلومات‬ ‫الحاسبات‬ ‫كلية‬
–‫القاهرة‬ ‫جامعة‬
‫العلمى‬ ‫البحث‬ ‫مهارات‬ ‫عن‬ ‫محاضرات‬ ‫سلسلة‬2017
#2
The essential mission of SRGE toward the research
and education in Egypt is to foster learning and
promoting research integrity in the current and next
generation of researchers in Egypt. SRGE is
rededicating itself to this fundamental purpose.
**Slides are adapted from several presentations on the internet as well as
experiences
Permission
Rebuttal letter
Most papers can be much
improved by more work on
them. When we are rejected, we
are forced to do that.
Vincent Calcagno,
French Institute for Agricultural
Research
6
•‫تعالى‬ ‫هللا‬ ‫قال‬:
(ِ‫م‬ ‫وا‬ُ‫ن‬َ‫م‬‫آ‬ َ‫ين‬ِ‫ذ‬‫ه‬‫ال‬ ُ ‫ه‬‫اَّلل‬ ِ‫ع‬َ‫ف‬ْ‫ر‬َ‫ي‬ُ‫وت‬
ُ
‫أ‬ َ‫ين‬ِ‫ذ‬‫ه‬‫ال‬َ‫و‬ ْ‫م‬ُ‫نك‬‫وا‬
َ‫ت‬ ‫ا‬َ‫م‬ِ‫ب‬ ُ ‫ه‬‫اَّلل‬َ‫و‬ ٍ‫ت‬‫ا‬َ‫ج‬َ‫ر‬َ‫د‬ َ‫م‬ْ‫ل‬ِ‫ع‬ْ‫ال‬‫ير‬ِ‫ب‬َ‫خ‬ َ‫ون‬ُ‫ل‬َ‫م‬ْ‫ع‬)
‫للعلم‬‫مكانة‬‫مرموقة‬‫في‬‫اإلسالم‬‫بدلي‬‫ل‬‫أن‬
‫أول‬‫آية‬‫نزلت‬‫على‬‫رسول‬‫هللا‬‫صلى‬‫هللا‬
‫عليه‬‫وسلم‬‫كانت‬‫تحث‬‫على‬‫القراءة‬‫وهي‬
‫بوابة‬‫العلم‬‫الفسيح‬.‫كما‬‫أقسم‬‫سبح‬‫انه‬
‫وتعالى‬‫بالقلم‬,‫وهو‬‫الشك‬‫أداة‬‫من‬‫أدوات‬
‫تحصيل‬‫العلم‬,‫وال‬‫يقسم‬‫هللا‬‫تعالى‬
‫بشيء‬‫إال‬‫لعظمته‬‫وعلو‬‫شأنه‬
 Rejection!!!!!!
 Rejection letter received
 Keep your emotions cool and open
mind
 Keep your team posted
 Rejection scenario
 The most common options for next
steps after rejection
 Can a paper get rejected after a major
revision?
 Even If the Reviewer Is Wrong, It
Does Not Mean You Are Right
 Why is it bad to submit the same
research paper to multiple journals?
 How to answer reviewers for a
journal paper revision?
 Six things to do before writing your
manuscript
How many rejections did you face
before your first paper got accepted?
If at FirstYou Don't
Succeed, Cool Off,
Revise, and Submit
Again
 All of us go through this experience. We love
our research, we work very hard at it. We want
to share it with the scientific community and
the lay people. But, sometimes our paper is not
accepted. Two of 3 reviewers came back with
some comments that may not be called for.
 When does a rejection work out for your good?
 When does a rejection of a scientific paper become
beneficial to the author? Have you experienced a rejection
that worked out for your good?
No submission "No Rejection",
No publication...No work...No
Contribution...
 Let's face it – most scientists believe in
their data and assumptions and thus
expect that their paper will be accepted
with only minor revisions at worst case.
Thus, when the letter from the editors hits
your email with the negative response,
count to 10 and breathe deep.
 The decision might be frustrating and
enraging, but remember that in most
cases the decision is not a personal but a
professional one (and in many cases the
reviewers' comments improve the next
versions of the manuscript).

 When first receiving a rejection letter,
whether the paper was rejected at the
editor's or at the reviewer's door, it is
better to read the letter again when
you're passed the anger stage.
 Looking at the critics from a professional
perspective will enable you to open up to
the comments and see their role in
improving your manuscript. Read the
critical comments and for each comment
answer the following questions:
 Is this comment correct and relevant?
 Have the referee got to the bottom of
the experiment/claim?
 How much weight this comment has on
the overall rejection decision?
 Assuming this comment is correct and in
place, can I supply data/claim to defer it?
 Once you outlined the major
rejections it is time to evaluate
how much improvements the
manuscript requires.
 You might want to get the advice
of a colleague, which will look at
the manuscript objectively (it is
best to consult with a colleague
before submitting the
manuscript).
 Assuming this work is done by your
students (and other collaborating students),
best you update them on the current status
of the work by forwarding them the
rejection letter.
 Sharing this will both give them a sense of
appreciation and involvement, and in
addition it will give them a glimpse of what
is expected of them (assuming the
comments are reasonable and correct). If
your work involves a collaboration, it
might be worthwhile meeting everyone
over coffee and discussing the rejection
letter, the implications, suggestion for
improved experiments and deciding who's
doing what.
 You might even consider
asking a new collaborator to
come along and generate data
that will strengthen the
manuscript and your claims,
and your co-authors should
be updated on this step as
well.
Appeal the rejection
Resubmit to the
same journal
Make changes and
submit to a
different journal
Make no changes
and submit to
another journal
File the
manuscript away
and never resubmit
it
Will discuss each option in details with recommendation!
 The journal should have a publicly
described policy for appealing
editorial decisions. Appealing a
rejection is within your rights as an
author, but base your appeal on logic
and not emotion.
 If a legitimate misunderstanding or
error led the reviewers to
recommend rejection,
 Outline your points to the editor without
belittling ‫تحقير‬ the reviewers or being
argumentative.
 Appeals based on the scope of the
journal or the perceived impact of
your work are unlikely to succeed.
 The journal may reject your initial
offering but invite you to resubmit later
after addressing the reviewers’ concerns.
If you are strongly interested in
publishing in that journal, this option
may be your top choice.
 “Remember that some journals will
inform you that they are not interested in
accepting any future versions of the
manuscript”; you should respect this
decision and try a different journal.
 The third option is by far the
most common.
 Carefully consider the comments
you received from the reviewers,
work to improve your
manuscript, and submit the
manuscript to another journal.
 Be sure to adjust details like the
 cover letter,
 reference format,
 other journal-specified details
before resubmission.
 While this option is very easy, it’s not a good
idea. By refusing to acknowledge any of the
changes that the first set of reviewers
suggested, you are basically negating all the
effort expended in that first round of review.
 Chances are that some of the suggestions
would improve your manuscript, even if some
were mistaken.
 New reviewers are likely to pick up on several
of the same issues; you now have a chance to
address them ahead of time. And on a more
practical note, your manuscript may actually
be reviewed by some of the same people at a
new journal. If you haven’t made any efforts to
change the paper, be assured that their
recommendation will not change!

 It can be easy to decide that your paper
simply isn’t worth the trouble of
resubmission. Still, while it is easy to let a
paper go, it’s not best for the research
community. Your data might be very
valuable to someone else, either to provide
the missing piece to a puzzle or to head off
fruitless avenues of research. As hard as it
is to believe in these days of complete
media saturation, scholarly publishing may
yet suffer from publishing too little, not too
much. If you don’t want to argue for your
article’s “fit” to a particular journal,
 Finally, you can post your work to a site
like figshare or Dryad, where it will be citable and
freely accessible.
Figshare is an online digital repository where
researchers can preserve and share their
research outputs, including figures, datasets,
images, and videos. It is free to upload
content and free to access, in adherence to
the principle of open data
Yes
Can a paper get
rejected after a
major revision?
a major revision of a paper will almost and
always go back to the original reviewers
to see if the revisions respond to their
comments.
One thing you can do in the future to
speed the re-review process is include a
cover letter with your revised manuscript
that explains how you responded to the
main comments of reviewers. ("We added
a paragraph in Section 4.1 to better
distinguish the proscriptive and
prescriptive approaches." "We corrected
the problem pointed out in Equation (8).")
That way the reviewers can quickly zero in
on the parts of the paper that changed,
and conduct their re-reviews more
quickly.
REASON (1)
 You violate the code of
ethics that says you can't
submit the exactly same
paper to more than one
conference or journal
REASON (2)
 You are wasting the
reviewer's time
Can I submit the same paper to several journals? I want to publish in one journal only, but if I submit it to two
or three simultaneously, then if I get a rejection from one, I won't waste time waiting for the decision before
submitting to the second.
‫الوقت‬ ‫نفس‬ ‫فى‬ ‫البحث‬ ‫الترسل‬
‫مؤتمر‬ ‫او‬ ‫مجلة‬ ‫من‬ ‫الكثر‬
 Every rejection can be appealed by a rebuttal
letter to the editor. Consider that such letter is
often rejected. Even so, if you feel that some of
the comments you received are not relevant, or
that the experiments that were required shift
your focus off the manuscript topic, you might
want to consider a rebuttal letter.
 Notice that if the same line of comments is
common to all or most of the reviewers, then
you might want to reconsider whether your
own assessment is correct..
 You may also choose to share you rejection
letter on this Paper Rejection Repository so
that others may learn from your experience.
You can browse this repository to get an idea
on policies of various journals for rejection of
manuscripts, and read the comments of
reviewers on the work of other researchers
 When submitting a manuscript to a
journal you will need to supply several
names of reviewers.
 Eventually it is hard to know whether the
comments you received in the rejection
letter are from your own selected
reviewers or from the editor's pick.
 You can, however, analyze the comments
nature and determine which niche it fits
in.
 For example, let's say you supplied the names of a
cell biologist, a geneticist and a biochemist to the
journal and on scrutinizing the rejection comments
you see that many comments refer to your "poorly
performed and misanalysis of confocal results…".
 From such a comment you will know
that a cell biologist specializing in
confocal microscopy was one of the
judges and that next time you submit
your manuscript you might consider
choosing a cell biologist with a
slightly different background
(assuming the comment is petty and
is not justified).
CAN A REJECTED PAPER BE REVISED AND
SUBMITTEDTOTHE SAMEJOURNAL AS A NEW
SUBMISSION?
 Yes, after rejection you are free to do with your
manuscript whatever you want. Unfortunately,
 Some authors submit their paper to another
journal without making any changes, which is not
smart: the new editor may send your paper to the
same reviewers, who will not be amused if they
find that you haven't made any of the changes
they deemed necessary.
 The way to go is to look at why your paper was
rejected, and to address those issues before
resubmission.
CAN I SUBMITTHAT REJECTED PAPERTO
ANOTHERJOURNAL INTHE FIELD?
 NO It is preferable to submit the paper elsewhere. In case
someone insist in submitting the paper to the same journal
 And in case the paper has been completely rewritten and has a
substantial amount of new data and interpretations, you can
definitely check with the journal if they would consider it as a
new submission.
 it has to contact the editor with the arguments for
doing so (by email)
 the editors will sometimes make it clear that it is
appropriate to submit the same work again, but that it
will be considered as a new submission. This usually
means that they consider that serious work needs to be
done (rather than just changing the wording of the
paper).
REJECTED!!
 Sometimes reviewers miss
something and then ask about it in
the comments. Sometimes the
reviewer is not an expert on
everything you presented in the
paper and misjudges the importance
of something that they ask to be
removed. Sometimes a reviewer
misinterprets a result. Sometimes a
reviewer does not completely
understand your message and
therefore questions it. In other
words, reviewers can be wrong.
 But even if a reviewer appears
wrong, that does not mean you are
right. You, the author, could be the
source of the reviewer's misdirected
comment. If the reviewer is confused
or misjudges something in the paper,
they might have unintentionally
identified something you did not
explain with the proper clarity, forgot
to include, or failed to emphasize
sufficiently. So, look first at what you
can do to improve the paper and
satisfy the reviewer, not explain to
the reviewer how he or she is wrong.
 In some situations the reviewers will
make diametrically opposed
recommendations. For example, one
reviewer may suggest the addition of
more information to a figure,
whereas the second reviewer may
suggest that the figure could be
removed from the paper.
 In these situations you must decide
which suggestion will improve the
paper; however, do not ignore either
suggestion by using the argument
that the reviewers could not agree.
 Provide a logical explanation to both
reviewers for why you feel that one of
the suggestions would be more effective
in improving the paper.
 A journal is expensive to produce, and the
editor is responsible for balancing content
and costs. So don't be surprised if the editor
asks you to condense your paper by
removing text, or even removing a table or
graph.
 Take this request seriously, and make an
honest effort to help the editor.
 Look for overlap in the content of the
Introduction and the beginning of the
Discussion.
 Figure legends often restate experimental
details that have already been presented in
the Methods. Columns in tables can
sometimes be combined or eliminated and
replaced with footnotes. In today's
electronic-publishing environment,
informative but nonessential figures, tables,
and experimental details can be supplied as
online supplemental files. Substitute short
words for longer ones. Consider using the
active voice rather than the passive voice to
save words
How to answer
reviewers for a journal
paper revision?
You should first say thank you to the reviewers for the
useful comments that they have made to improve the
paper.
Then, in the same file, you should explain how you
have answered each reviewer comment that requires
to do something.
To do that, I suggest to organize your document as
follows. Create a section for each reviewer.Then, in
each section copy the comments made by the reviewer
and cite it as a quote (“…”). Then explain below the
quote how you have addressed the comment.
Complain to
the program
chairs or
editor:
Post the
reviews
online
Write an
angry letter
Discard the
reviews
Give up:
Do not
Some conferences (and all
journals) have a built-in
rebuttal process where
authors get to respond to
reviews. Resist the
temptation to write an angry
or snarky response to reviews
you perceive as unfair or
incorrect.
posting the reviews online
and responding to them
publicly may give you a
less of satisfaction in that
you at least get the final
word
The worst that can happen
is that you resubmit the
paper without changes and
one of the original reviewers
gets it again. They will not
be pleased to see you
ignored their hard work.
1) Think about why you want to publish
your work
 Have I done something new and
interesting?
 Is there anything challenging in my
work?
 Is my work related directly to a
current hot topic?
 Have I provided solutions to some
difficult problems?
 If all answers are "yes," then you can
start preparations for your manuscript.
 If any of the responses are "no," you can
probably submit your paper to a local
journal or one with lower Impact Factor.
 When responding to these questions, you
should keep in mind that reviewers are
using questionnaires in which they must
respond to questions such as:
 Does the paper contain sufficient new
material?
 Is the topic within the scope of the journal?
 Is it presented concisely and well organized?
 Are the methods and experiments presented
in the way that they can be replicated again?
 Are the results presented adequately?
 Is the discussion relevant, concise and well
documented?
 Are the conclusions supported by the data
presented?
 Is the language acceptable?
 Are figures and tables adequate and well
designed?, are there information duplicated?
Are they too many?
 Are all references cited in the text included in
the references list?
https://www.elsevier.com/connect/six-things-to-do-before-writing-your-manuscript
2) Decide what type of the manuscript to write.
 Full articles, or original articles, are the most
important papers. Often they are substantial
completed pieces of research that are of
significance as original research.
 Letters/rapid communications/short
communications are usually published for the
quick and early communication of significant and
original advances.They are much shorter than full
articles (usually strictly limited in size, depending
on each journal).
 Review papers or perspectives summarize
recent developments on a specific hot topic,
highlighting important points that have
previously been reported and introduce no new
information. Normally they are submitted on
invitation by the editor of the journal.
3) Choose the target journal.
 A common question is how to select the right
journal for your work. Do not gamble by
scattering your manuscript to many journals at
the same time. Only submit once and wait for the
response of the editor and the reviewers.
4) Pay attention to journal
requirements in the Guide for
Authors
5) Pay attention to the structure of the
paper.
 A section that enables indexing and
searching the topics, making the paper
informative, attractive and effective. It
consists of theTitle, the Authors (and
affiliations), theAbstract and the
Keywords.
 A section that includes the main text,
which is usually divided into: Introduction,
Methods, Results, Discussion and
Conclusions.
 A section that includes the
Acknowledgements, References, and
Supplementary Materials or annexe
6. Understand publication ethics to
avoid violations.
https://www.elsevier.com/connect/six-things-to-do-before-writing-your-manuscript
http://journalfinder.elsevier.com/
1) You can disagree, as long as you explain
 Explaining why you disagree will
help the reviewer and editor
understand your point of view and
ultimately help them make an
informed decision about your paper
 Don't fall into the trap of writing to
the editor to say that the reviewer is
crazy, or incompetent. Make it a
factual response. You should have a
complete, solid and polite rebuttal to
the editor. Write in such a manner that
your response can be forwarded to the
reviewer – editors love copy pasting."
2) Spell it out
 The simplest way to ensure your
responses are informative is to "copy
paste each reviewer comment, and type
your response below it. If you do so,
you should be very specific. So if the
reviewer says 'the discussion section is
not clear', it's not enough to say 'we
changed the discussion section'. What
you should say is 'we changed the
discussion section on page 24, lines 7-
23'. That makes it clear to the editor
what you have changed, and when it
goes back to the reviewer, the reviewer
sees it immediately and you create a
win-win situation".3) Don't forget to make the changes
One of the biggest mistakes made by authors is to respond to all the comments, but forget to
actually update the paper.
 A cover letter for a revised
manuscript should be sent to
the editor along with the
author’s responses to the
reviewer comments.This letter
is often called the response
letter or the rebuttal letter.
 Most manuscripts have to be
revised at least once before they
are accepted by a journal.
 It is important to compose a good
response letter to accompany the revised
manuscript. A response letter or rebuttal
letter can be written in two ways:
 You write a cover letter and attach a separate
document in which you have addressed the
reviewer comments.
 Alternatively, your rebuttal letter can be divided
into two sections: an introductory part addressed to
the journal editor and a second part containing
detailed responses to the reviewer comments.
Addressing reviewer comments can be a difficult task,
especially, if there are many comments and the comments
are long. Next slides e are a few things to keep in mind
when addressing reviewer comments:
 Address each and every point raised by
the editor and reviewers: Copy every
single comment in your rebuttal letter and
write your reply immediately after each
point in a clear and concise manner. Make
sure that not a single point raised by the
reviewers/editor goes unanswered. Even if
you do not agree with a point or have not
made the change suggested, please mention
that and provide a reason for your decision.
 Provide point-by-point
responses: Number the reviewers’ points
and respond to them sequentially. Highlight
the corresponding changes in the manuscript
or refer to the line numbers in the original
and revised manuscripts. Consider setting
the reviewer comments in bold to
distinguish them from your responses.
 Categorize the reviewers’ comments: If
there are too many comments, it would help
if you separate the comments into categories.
For example, all the comments related to
methodology could be grouped together, all
related to language could be under one
category, etc. If you decide to do that, make
sure you add a sentence such as “I have
separated my responses to the reviewers’
comments according to several categories in
order to achieve an integrated ap
 If comments are in the form of
paragraphs, split them into points: If the
reviewers’ comments are in the form of
large paragraphs, divide them into separate
points so that you can address them
individually. If you are not sure of what a
particular comment means, begin your
response by explaining what you have
understood from the comment.proach in
my responses.”
 In case you feel the reviewer has misunderstood
something, clarify politely: Reviewers are experts
who have extensive knowledge of their field; therefore,
if you feel that a reviewer has misunderstood certain
parts, it is likely to be due to lack of clarity in your
presentation. In such cases, point out the
misunderstanding politely and provide the necessary
clarification. For instance, you could write: “I am sorry
that this part was not clear in the original manuscript. I
should have explained that….I have revised the
contents of this part.”
 If you cannot address a point, give a reason: If you
cannot address any of the reviewers’ concerns, explain
why you cannot do it, for instance, if the reviewer has
asked you to provide additional data or conduct
additional experiments, which you feel are not
necessary. Avoid giving personal reasons like lack of
funds or lack of time as reasons. Do not show a
negative attitude. Be respectful in your reply. First,
thank the reviewer for his/her in-depth analysis and
useful comments. Then, explain where you feel you
cannot completely agree with the reviewer’s
suggestion. Your answer should be clear and logical
and should be backed by evidence.
 When adding new data or figures, mention their
location in the manuscript: If you have included new
data, tables, figures, etc., indicate where you have
added the information: mention page numbers, figure
panels, etc. If required, attach supplementary material
so that the reviewer/editor has everything that he/she
needs and does not have to go searching for the
material.
 Maintain a polite and respectful tone
throughout: Remember that the reviewers have spent a
lot of time and effort in evaluating your manuscript.
Even if some of the comments appear to be negative, do
not take them personally. The reviewers are critiquing
your work, not you, and their inputs are value additions
to your work. Be polite and respectful in your tone even
if you feel that some of the comments are unfavorable
or unreasonable. Sometimes some reviewers may have
conflicting views. But remember that each of them will
read your rebuttal letter, so it is best to be equally polite
to all the reviewers. The tone of the cover letter is very
important.
 Conclude the letter appropriately: Be careful
of how you end the rebuttal letter. A concluding
sentence such as the following may sound
overly conceited: "Since all the corrections
have been made, we hope the manuscript will
now be accepted without any further changes.”
A straightforward but polite ending would be
“We look forward to hearing from you
regarding our submission. We would be glad to
respond to any further questions and comments
that you may have." Such an ending is formal,
polite, and reflects a willingness to make
further changes if required.
http://www.editage.com/insights/how-to-write-a-great-rebuttal-letter?regid=1487525495
 Content of the article is not within the scope of the journal
 Non-conformity with journal style, format, or guidelines
 Duplication or large overlap with existing work or apparent plagiarism
 Results are not novel or significant enough; they lead to only an
incremental advance in field
 Article is too specialized/in-depth or superficial
 Limited interest to journal target audience
 Poor quality of research
 Results or interpretation are too preliminary or speculative
 Lack of clarity/conciseness in presentation
There could be without review: many reasons for rejection
 Cite your past work when it is relevant to a new
manuscript. However, do not reference every paper
you have written just to increase your citation count.
 Carefully choose your
keywords. Choose keywords that researchers in
your field will be searching for so that your paper
will appear in a database search.
 Use your keywords and phrases in your title and
repeatedly in your abstract. Repeating keywords
and phrases will increase the likelihood your paper
will be at the top of a search engine list, making it
more likely to be read.
 Use a consistent form of your name on all of your
papers. Using the same name on all of your papers
will make it easier for others to find all of your
published work. If your name is very common,
consider getting a research identifier, such as
an ORCID. You can provide your ORCID in your
email signature and link that ID to your publication
list so that anyone you email has access to your
publications.
 Make sure that your information is correct. Check that your
name and affiliation are correct on the final proofs of your
manuscript and check that the paper’s information is accurate
in database searches.
 Make your manuscript easily accessible. If your paper is not
published in an open-access journal, post your pre- or post-
publication prints to a repository.
 Share your data. There is some evidence that sharing your
data can increase your citations. Consider posting to data
sharing websites, such as Figshare or SlideShare, or
contributing to Wikipedia and providing links to your published
manuscripts.
 Present your work at conferences. Although conference
presentations are not cited by other others, this will make your
research more visible to the academic and research
communities. Check out these tips for making the most of your
next research conference.
 Use social media. Provide links to your papers on social media
(e.g., Facebook, Twitter, Academia.edu, ResearchGate, Mendel
ey) and your university profile page.
 Actively promote your work. Talk to other researchers about
your paper, even ones not in your field, and email copies of
your paper to researchers who may be interested. Create a blog
or a website dedicated to your research and share it.
http://journalfinder.elsevier.com
Helps inexperienced authors to select the
correct journals for their papers
Helps authors working in multidisciplinary
fields identify possible journals
Highlights journals that offer open-access
options
1. You must address all comments
• You can’t pick-and-choose which comments to
address
• Even minor comments need to be addressed
2. Address does not always mean change
• You and your co-authors should decide what to
change, and what to defend
• Often, changing is the easiest route
(demonstrates openness to suggestions)
3. Change does not always mean revamp
• Easy changes include:
 Rewording
 Adding extra references
 Adding an extra paragraph, table, or figure
 Adding an appendix
• More difficult changes include:
 Modifying your central hypothesis
 Modifying your main algorithm
 Redoing an experiment
4. Always change technical errors
• It’s the reviewer’s job to find these
• Even minor errors can cast doubt
5. Always change errors in references
• Skilled reviewers know the history better than
newer authors
• You don’t want to get off on the wrong foot with
experts in the field by not citing the correct
papers in the correct order
6. Always change parts which yielded
“I didn’t understand”-type comments
• If the reviewer didn’t understand it, the readers
might not either
• The effort required to defend this point will be
more than the effort required to change the
paper
• “I didn’t understand” is a polite way of saying
“you didn’t explain clearly enough”
7. Always change parts which are have been
mentioned by multiple reviewers
• If two or more reviewers make similar
comments, the readers will likely have the same
comments
• Repeated comments stand out to the editor
• The effort required to defend this point will be
more than the effort required to change the
paper
 Divide the comments into two categories:
1. Easy changes
2. Difficult changes
 Do the difficult changes first
 This might take some time (especially if you need to
repeat an experiment)
 Easy changes might be eliminated
 Consult with your co-authors on changes
Reviewer did not like the
memoryless Gaussian
assumption
Reviewer did not like the
memoryless Gaussian
assumption
Quick fix: Use a
distribution-dependent
parameter
 Letter to the editor
 Summary of changes/defenses
 Write this last
 Letters to each of the reviewers
 Responses to each comment
 Write these first
 Letter to typesetter (optional)
February 5, 2003
Dear Dr. Said:
Enclosed please find documents which contain our
responses to the reviewers of manuscript TIP-00290-
2003 "Dynamic Contrast-Based Quantization for Lossy
Wavelet Image Compression," D. M. Chandler and S.
S. Hemami.
We have modified the manuscript to directly address
all of the comments of the reviewers. The
modifications are detailed in the individual
letters to the reviewers.
(continued)
To summarize our changes:
• We have performed and added the results of a
psychophysical experiment... (Reviewers 1, 2,
and 4)
• We have reworded our claims about the images
produced... (Reviewers 2 and 4)
• We have generalized our rate-distortion function
to account for... (Reviewers 3 and 4)
• We have added an appendix which shows the
derivation of the approximation... (Reviewer 4)
(continued)
We sincerely appreciate the helpful comments and
suggestions.
Thank you for facilitating this submission.
Sincerely,
Damon M. Chandler
School of Electrical and Computer Engineering
Oklahoma State University
Stillwater, OK 74074
 Open by thanking the reviewer for his/her time during
the review
 Then, add a summary of changes
 Next, make a dialogue-type list of comments and
responses
 For chan ges: Indicate location (page and paragraph numbers)
 For defenses: Be polite and write professionally (don’t write
anything you wouldn’t say in person)
 Thank the reviewer abundantly (but don’t overdo it)
 Close by thanking the reviewer again
Responses to Reviewer 2 of TIP-00290-2003 “Dynamic
Contrast-Based Quantization for Lossy Wavelet Image
Compression,” D. M. Chandler and S. S. Hemami
Thank you for taking the time to review this paper.
We have addressed all of your comments, as
described in the dialogue below. In summary, we
have performed a psychophysical experiment to
assess the bit-savings afforded by using the
proposed algorithm over baseline JPEG-2000. This
experiment and its results are described in Section
VI.D and Table III.
(continued)
Reviewer: <Insert reviewer’s comment>
Authors: <Insert your response>
Reviewer: Each subband is assumed to be a
"memoryless Gaussian source". This assumption is
not very realistic. It would be interesting to
know the impact of this assumption on the
performance of the proposed method.
Authors: Thank you for pointing this out. We have
removed the memoryless Gaussian assumption, and we
have accordingly modified the rate-distortion
function via a parameter which depends on the
probability density function of the subband (Page
24, 3rd paragraph).
Reviewer: Based on Fig. 6, the improvements of the
proposed approach do not appear to be very
impressive. Even though there are definitely some
improvements, it is not clear how significant they
are.
Authors: We are hoping that the printed journal
version of this figure will be able to better-
reproduce the visual gains. In addition, we have
now made the images available online. We have also
presented the results of a psychophysical
experiment to quantify the bit-savings afforded by
using the proposed algorithm over baseline JPEG-
2000.
Reviewer: On page 3, lines 1 to 3, this statement
is incorrect as it indicates that existing
quantization strategies rely only on a
predetermined set of quantizer step sizes. This is
not correct as there are existing perceptual-based
algorithms that dynamically and adaptively compute
the quantizer step sizes such as the work in
Reference [10] (which also appeared as a journal
version in the IEEE ITIP, 2000). So, this
statement should be removed or rewritten.
Authors: Thank you for catching this. We have
removed the statement. We have also updated Ref.
10 to refer to the journal version of the research.
Reviewer: On page 2, the reviewer especially does
not agree with item 1 where the authors stated that
most experiments involving the HVS have quantified
contrast sensitivity based only on simple targets.
The authors imply in item 1 that more complex
natural-image targets are needed which is not
correct.
Also, Item 3 should be modified as several
perceptual-based algorithm exist which account for
masking in addition to the regular CSF and this
include references [8] and [10].
Authors: We appreciate and agree with many of your
points. We do believe however, that our
methodology is more of a top-down approach that has
offered useful insights into the overall response
of the HVS to the types of distortions induced via
wavelet-based image compression presented against
natural-image backgrounds.
We did not intend Items 1, 2 and 3 to characterize
all HVS-based compression algorithms, and we
apologize if it came across as such. As per your
suggestions, we have added specific references to
Items 1, 2, and 3. To Item 1, we have added
references...
We sincerely appreciate your insightful and
constructive comments and suggestions. We believe
that these have greatly strengthened the paper.
Thank you again for taking the time to review this
paper.
Sincerely,
Damon M. Chandler
School of Electrical and Computer Engineering
Oklahoma State University
Stillwater, OK 74074
 When a journal displays the “decision in process” status, it means that
the editorial board is in the process of making the final decision about
your paper. At this stage when the journal decision is in process, the
editor will go through the revised manuscript and your replies to the
reviewer comments before coming to a decision. The editor might
decide to consult the peer reviewers once more. Sometimes, there may
be quite a few papers lined up before yours. This is why this stage might
take long. There’s no specific time frame for this; the time may vary
depending on the journal and the field. I think it would be reasonable to
write to the editor to inquire about the status of your paper if you
haven’t received a response even a month after the last status change.
When I cite some other work, I'm not
sure how I should write the
reference. Should I use the name of
the first author or that of the
correspondence author before "et
al."?
 At the time of submission of a manuscript, journals require
you to choose one of the authors as the corresponding author.
The corresponding author is the one who receives all
notifications from the journal including manuscript status,
reviewers’ comments, and the final decision. Although
journals usually perceive the role of a corresponding author as
purely administrative, this role is associated with seniority in
some cultures. The corresponding author is often the group
leader or a senior researcher whose contact address is not
likely to change in the near future. In cases where the main
contributor of the study is also the group leader, he or she can
be both first and corresponding author for the study.
 Essentially, the second
word of the term et al takes
on a ‘period’ (et al.)
irrespective of whether it
falls in the middle of a
sentence.
 1. The title of your research paper
should be brief and attractive.
 A good title tells the reader what the
research is about briefly and clearly. Omit
unnecessary details in the title: for
example, it is not necessary to mention the
sample size of your experimental or control
groups or the manufacturing details of the
equipment you used in the title of your
research paper, unless this information is
relevant to the content. Often authors use
active or direct verbs (e.g. “x causes y”
instead of “y is caused by x”). Moreover, a
good title for a research paper is typically
around 10 to 12 words long. If your journal
has a word count restriction for your title,
ensure that you follow it. A lengthy title is
likely to take your readers’ attention away
from an important point.
 2. Avoid using abbreviations or
jargon that might put off the
reader.
 Unless an abbreviation is universally well-
known, e.g., AIDS or UNICEF, avoid
including it in the title. Lesser-known or
highly specific abbreviations that may not
be immediately familiar to readers might
discourage them from taking an interest in
your research paper
Avoid: MMP expression profiles
cannot distinguish between normal
and early osteoarthritic synovial fluid
Better: Matrix metalloproteinase
protein expression profiles cannot
distinguish between normal and
early osteoarthritic synovial fluid
Q2)
What is salami
slicing?
Q3)
Why is duplicate
publication a
problem?
Q4)What is a simultaneous submission? Why is
simultaneous submission a problem?
‫المصرية‬ ‫البحثية‬ ‫العلمية‬ ‫للمجمعة‬ ‫الثقافية‬ ‫اللجنة‬ ‫تحيات‬ ‫مع‬
- It refers to the practice of partitioning a
large study that could have been reported in
a single research article into smaller
published articles.
- In other words, it means breaking up a
single research paper into their “least
publishable units,” with each paper
reporting different findings from the same
study.
- A set of papers are referred to as salami
publications when more than one paper
covers the same population, methods, and
research question.
‫محاضرات‬ ‫سلسلة‬ ‫من‬
‫العلمى‬ ‫البحث‬ ‫مهارات‬
 If the results of a single complex study are best
presented as a ‘cohesive’ single whole, they
should not be partitioned into individual papers.
Furthermore, if there is any doubt as to whether a
paper submitted for publication represents
fragmented data, authors should enclose other
papers (published or unpublished) that might be
part of the paper under consideration.
However, it is not always incorrect to divide a research
project into multiple publications.
 This can be done if the dataset is too large or if
the study has a secondary finding that was not
discussed in the first paper. Whenever researchers
decide to divide a single study into smaller
segments, they should understand that it should
be done only in the best interests of research, that
is, if it genuinely benefits the audience by being
published as smaller segments. However, in such
cases, the authors should always disclose this and
provide copies of related studies at the time of
submission.
• Be a good academic citizen
• Know what you’re doing
• Keep track of what you’ve done
• Back everything up
• Don’t Lie (fabrications)
• Don’t Cheat (falsifications)
• Don’t Steal (plagiarism)
• Publish your discoveries

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How to deal with a journal rejection

  • 1. Seminar on How to deal with a journal rejection? ‫المصرية‬ ‫البحثية‬ ‫العلمية‬ ‫المجموعة‬ ‫ورئيس‬ ‫مؤسس‬ ‫أ‬‫والمعلومات‬ ‫الحاسبات‬ ‫بكلية‬ ‫ستاذ‬–‫القاهرة‬ ‫جامعة‬ ‫ا‬‫أل‬‫الدكتور‬ ‫ستاذ‬/‫حسنين‬ ‫عطيفى‬ ‫أبوالعال‬ ‫الموافق‬ ‫السبت‬11‫مارس‬2017 ‫ظهرا‬ ‫عشر‬ ‫الثانية‬ ‫الساعة‬ ‫رسمى‬ ‫حسن‬ ‫محمد‬ ‫الدكتور‬ ‫االستاذ‬ ‫مدرج‬ ‫والمعلومات‬ ‫الحاسبات‬ ‫كلية‬ –‫القاهرة‬ ‫جامعة‬ ‫العلمى‬ ‫البحث‬ ‫مهارات‬ ‫عن‬ ‫محاضرات‬ ‫سلسلة‬2017 #2
  • 2. The essential mission of SRGE toward the research and education in Egypt is to foster learning and promoting research integrity in the current and next generation of researchers in Egypt. SRGE is rededicating itself to this fundamental purpose. **Slides are adapted from several presentations on the internet as well as experiences
  • 4.
  • 5. Rebuttal letter Most papers can be much improved by more work on them. When we are rejected, we are forced to do that. Vincent Calcagno, French Institute for Agricultural Research
  • 6. 6 •‫تعالى‬ ‫هللا‬ ‫قال‬: (ِ‫م‬ ‫وا‬ُ‫ن‬َ‫م‬‫آ‬ َ‫ين‬ِ‫ذ‬‫ه‬‫ال‬ ُ ‫ه‬‫اَّلل‬ ِ‫ع‬َ‫ف‬ْ‫ر‬َ‫ي‬ُ‫وت‬ ُ ‫أ‬ َ‫ين‬ِ‫ذ‬‫ه‬‫ال‬َ‫و‬ ْ‫م‬ُ‫نك‬‫وا‬ َ‫ت‬ ‫ا‬َ‫م‬ِ‫ب‬ ُ ‫ه‬‫اَّلل‬َ‫و‬ ٍ‫ت‬‫ا‬َ‫ج‬َ‫ر‬َ‫د‬ َ‫م‬ْ‫ل‬ِ‫ع‬ْ‫ال‬‫ير‬ِ‫ب‬َ‫خ‬ َ‫ون‬ُ‫ل‬َ‫م‬ْ‫ع‬) ‫للعلم‬‫مكانة‬‫مرموقة‬‫في‬‫اإلسالم‬‫بدلي‬‫ل‬‫أن‬ ‫أول‬‫آية‬‫نزلت‬‫على‬‫رسول‬‫هللا‬‫صلى‬‫هللا‬ ‫عليه‬‫وسلم‬‫كانت‬‫تحث‬‫على‬‫القراءة‬‫وهي‬ ‫بوابة‬‫العلم‬‫الفسيح‬.‫كما‬‫أقسم‬‫سبح‬‫انه‬ ‫وتعالى‬‫بالقلم‬,‫وهو‬‫الشك‬‫أداة‬‫من‬‫أدوات‬ ‫تحصيل‬‫العلم‬,‫وال‬‫يقسم‬‫هللا‬‫تعالى‬ ‫بشيء‬‫إال‬‫لعظمته‬‫وعلو‬‫شأنه‬
  • 7.  Rejection!!!!!!  Rejection letter received  Keep your emotions cool and open mind  Keep your team posted  Rejection scenario  The most common options for next steps after rejection  Can a paper get rejected after a major revision?  Even If the Reviewer Is Wrong, It Does Not Mean You Are Right  Why is it bad to submit the same research paper to multiple journals?  How to answer reviewers for a journal paper revision?  Six things to do before writing your manuscript
  • 8. How many rejections did you face before your first paper got accepted?
  • 9. If at FirstYou Don't Succeed, Cool Off, Revise, and Submit Again
  • 10.  All of us go through this experience. We love our research, we work very hard at it. We want to share it with the scientific community and the lay people. But, sometimes our paper is not accepted. Two of 3 reviewers came back with some comments that may not be called for.  When does a rejection work out for your good?  When does a rejection of a scientific paper become beneficial to the author? Have you experienced a rejection that worked out for your good? No submission "No Rejection", No publication...No work...No Contribution...
  • 11.
  • 12.  Let's face it – most scientists believe in their data and assumptions and thus expect that their paper will be accepted with only minor revisions at worst case. Thus, when the letter from the editors hits your email with the negative response, count to 10 and breathe deep.  The decision might be frustrating and enraging, but remember that in most cases the decision is not a personal but a professional one (and in many cases the reviewers' comments improve the next versions of the manuscript). 
  • 13.  When first receiving a rejection letter, whether the paper was rejected at the editor's or at the reviewer's door, it is better to read the letter again when you're passed the anger stage.  Looking at the critics from a professional perspective will enable you to open up to the comments and see their role in improving your manuscript. Read the critical comments and for each comment answer the following questions:  Is this comment correct and relevant?  Have the referee got to the bottom of the experiment/claim?  How much weight this comment has on the overall rejection decision?  Assuming this comment is correct and in place, can I supply data/claim to defer it?  Once you outlined the major rejections it is time to evaluate how much improvements the manuscript requires.  You might want to get the advice of a colleague, which will look at the manuscript objectively (it is best to consult with a colleague before submitting the manuscript).
  • 14.  Assuming this work is done by your students (and other collaborating students), best you update them on the current status of the work by forwarding them the rejection letter.  Sharing this will both give them a sense of appreciation and involvement, and in addition it will give them a glimpse of what is expected of them (assuming the comments are reasonable and correct). If your work involves a collaboration, it might be worthwhile meeting everyone over coffee and discussing the rejection letter, the implications, suggestion for improved experiments and deciding who's doing what.  You might even consider asking a new collaborator to come along and generate data that will strengthen the manuscript and your claims, and your co-authors should be updated on this step as well.
  • 15.
  • 16. Appeal the rejection Resubmit to the same journal Make changes and submit to a different journal Make no changes and submit to another journal File the manuscript away and never resubmit it Will discuss each option in details with recommendation!
  • 17.  The journal should have a publicly described policy for appealing editorial decisions. Appealing a rejection is within your rights as an author, but base your appeal on logic and not emotion.  If a legitimate misunderstanding or error led the reviewers to recommend rejection,  Outline your points to the editor without belittling ‫تحقير‬ the reviewers or being argumentative.  Appeals based on the scope of the journal or the perceived impact of your work are unlikely to succeed.
  • 18.  The journal may reject your initial offering but invite you to resubmit later after addressing the reviewers’ concerns. If you are strongly interested in publishing in that journal, this option may be your top choice.  “Remember that some journals will inform you that they are not interested in accepting any future versions of the manuscript”; you should respect this decision and try a different journal.
  • 19.  The third option is by far the most common.  Carefully consider the comments you received from the reviewers, work to improve your manuscript, and submit the manuscript to another journal.  Be sure to adjust details like the  cover letter,  reference format,  other journal-specified details before resubmission.
  • 20.  While this option is very easy, it’s not a good idea. By refusing to acknowledge any of the changes that the first set of reviewers suggested, you are basically negating all the effort expended in that first round of review.  Chances are that some of the suggestions would improve your manuscript, even if some were mistaken.  New reviewers are likely to pick up on several of the same issues; you now have a chance to address them ahead of time. And on a more practical note, your manuscript may actually be reviewed by some of the same people at a new journal. If you haven’t made any efforts to change the paper, be assured that their recommendation will not change! 
  • 21.  It can be easy to decide that your paper simply isn’t worth the trouble of resubmission. Still, while it is easy to let a paper go, it’s not best for the research community. Your data might be very valuable to someone else, either to provide the missing piece to a puzzle or to head off fruitless avenues of research. As hard as it is to believe in these days of complete media saturation, scholarly publishing may yet suffer from publishing too little, not too much. If you don’t want to argue for your article’s “fit” to a particular journal,  Finally, you can post your work to a site like figshare or Dryad, where it will be citable and freely accessible. Figshare is an online digital repository where researchers can preserve and share their research outputs, including figures, datasets, images, and videos. It is free to upload content and free to access, in adherence to the principle of open data
  • 22. Yes Can a paper get rejected after a major revision? a major revision of a paper will almost and always go back to the original reviewers to see if the revisions respond to their comments. One thing you can do in the future to speed the re-review process is include a cover letter with your revised manuscript that explains how you responded to the main comments of reviewers. ("We added a paragraph in Section 4.1 to better distinguish the proscriptive and prescriptive approaches." "We corrected the problem pointed out in Equation (8).") That way the reviewers can quickly zero in on the parts of the paper that changed, and conduct their re-reviews more quickly.
  • 23. REASON (1)  You violate the code of ethics that says you can't submit the exactly same paper to more than one conference or journal REASON (2)  You are wasting the reviewer's time Can I submit the same paper to several journals? I want to publish in one journal only, but if I submit it to two or three simultaneously, then if I get a rejection from one, I won't waste time waiting for the decision before submitting to the second. ‫الوقت‬ ‫نفس‬ ‫فى‬ ‫البحث‬ ‫الترسل‬ ‫مؤتمر‬ ‫او‬ ‫مجلة‬ ‫من‬ ‫الكثر‬
  • 24.  Every rejection can be appealed by a rebuttal letter to the editor. Consider that such letter is often rejected. Even so, if you feel that some of the comments you received are not relevant, or that the experiments that were required shift your focus off the manuscript topic, you might want to consider a rebuttal letter.  Notice that if the same line of comments is common to all or most of the reviewers, then you might want to reconsider whether your own assessment is correct..  You may also choose to share you rejection letter on this Paper Rejection Repository so that others may learn from your experience. You can browse this repository to get an idea on policies of various journals for rejection of manuscripts, and read the comments of reviewers on the work of other researchers
  • 25.  When submitting a manuscript to a journal you will need to supply several names of reviewers.  Eventually it is hard to know whether the comments you received in the rejection letter are from your own selected reviewers or from the editor's pick.  You can, however, analyze the comments nature and determine which niche it fits in.  For example, let's say you supplied the names of a cell biologist, a geneticist and a biochemist to the journal and on scrutinizing the rejection comments you see that many comments refer to your "poorly performed and misanalysis of confocal results…".  From such a comment you will know that a cell biologist specializing in confocal microscopy was one of the judges and that next time you submit your manuscript you might consider choosing a cell biologist with a slightly different background (assuming the comment is petty and is not justified).
  • 26. CAN A REJECTED PAPER BE REVISED AND SUBMITTEDTOTHE SAMEJOURNAL AS A NEW SUBMISSION?  Yes, after rejection you are free to do with your manuscript whatever you want. Unfortunately,  Some authors submit their paper to another journal without making any changes, which is not smart: the new editor may send your paper to the same reviewers, who will not be amused if they find that you haven't made any of the changes they deemed necessary.  The way to go is to look at why your paper was rejected, and to address those issues before resubmission. CAN I SUBMITTHAT REJECTED PAPERTO ANOTHERJOURNAL INTHE FIELD?  NO It is preferable to submit the paper elsewhere. In case someone insist in submitting the paper to the same journal  And in case the paper has been completely rewritten and has a substantial amount of new data and interpretations, you can definitely check with the journal if they would consider it as a new submission.  it has to contact the editor with the arguments for doing so (by email)  the editors will sometimes make it clear that it is appropriate to submit the same work again, but that it will be considered as a new submission. This usually means that they consider that serious work needs to be done (rather than just changing the wording of the paper). REJECTED!!
  • 27.  Sometimes reviewers miss something and then ask about it in the comments. Sometimes the reviewer is not an expert on everything you presented in the paper and misjudges the importance of something that they ask to be removed. Sometimes a reviewer misinterprets a result. Sometimes a reviewer does not completely understand your message and therefore questions it. In other words, reviewers can be wrong.  But even if a reviewer appears wrong, that does not mean you are right. You, the author, could be the source of the reviewer's misdirected comment. If the reviewer is confused or misjudges something in the paper, they might have unintentionally identified something you did not explain with the proper clarity, forgot to include, or failed to emphasize sufficiently. So, look first at what you can do to improve the paper and satisfy the reviewer, not explain to the reviewer how he or she is wrong.
  • 28.  In some situations the reviewers will make diametrically opposed recommendations. For example, one reviewer may suggest the addition of more information to a figure, whereas the second reviewer may suggest that the figure could be removed from the paper.  In these situations you must decide which suggestion will improve the paper; however, do not ignore either suggestion by using the argument that the reviewers could not agree.  Provide a logical explanation to both reviewers for why you feel that one of the suggestions would be more effective in improving the paper.
  • 29.  A journal is expensive to produce, and the editor is responsible for balancing content and costs. So don't be surprised if the editor asks you to condense your paper by removing text, or even removing a table or graph.  Take this request seriously, and make an honest effort to help the editor.  Look for overlap in the content of the Introduction and the beginning of the Discussion.  Figure legends often restate experimental details that have already been presented in the Methods. Columns in tables can sometimes be combined or eliminated and replaced with footnotes. In today's electronic-publishing environment, informative but nonessential figures, tables, and experimental details can be supplied as online supplemental files. Substitute short words for longer ones. Consider using the active voice rather than the passive voice to save words
  • 30. How to answer reviewers for a journal paper revision? You should first say thank you to the reviewers for the useful comments that they have made to improve the paper. Then, in the same file, you should explain how you have answered each reviewer comment that requires to do something. To do that, I suggest to organize your document as follows. Create a section for each reviewer.Then, in each section copy the comments made by the reviewer and cite it as a quote (“…”). Then explain below the quote how you have addressed the comment.
  • 31. Complain to the program chairs or editor: Post the reviews online Write an angry letter Discard the reviews Give up: Do not Some conferences (and all journals) have a built-in rebuttal process where authors get to respond to reviews. Resist the temptation to write an angry or snarky response to reviews you perceive as unfair or incorrect. posting the reviews online and responding to them publicly may give you a less of satisfaction in that you at least get the final word The worst that can happen is that you resubmit the paper without changes and one of the original reviewers gets it again. They will not be pleased to see you ignored their hard work.
  • 32. 1) Think about why you want to publish your work  Have I done something new and interesting?  Is there anything challenging in my work?  Is my work related directly to a current hot topic?  Have I provided solutions to some difficult problems?  If all answers are "yes," then you can start preparations for your manuscript.  If any of the responses are "no," you can probably submit your paper to a local journal or one with lower Impact Factor.  When responding to these questions, you should keep in mind that reviewers are using questionnaires in which they must respond to questions such as:  Does the paper contain sufficient new material?  Is the topic within the scope of the journal?  Is it presented concisely and well organized?  Are the methods and experiments presented in the way that they can be replicated again?  Are the results presented adequately?  Is the discussion relevant, concise and well documented?  Are the conclusions supported by the data presented?  Is the language acceptable?  Are figures and tables adequate and well designed?, are there information duplicated? Are they too many?  Are all references cited in the text included in the references list? https://www.elsevier.com/connect/six-things-to-do-before-writing-your-manuscript
  • 33. 2) Decide what type of the manuscript to write.  Full articles, or original articles, are the most important papers. Often they are substantial completed pieces of research that are of significance as original research.  Letters/rapid communications/short communications are usually published for the quick and early communication of significant and original advances.They are much shorter than full articles (usually strictly limited in size, depending on each journal).  Review papers or perspectives summarize recent developments on a specific hot topic, highlighting important points that have previously been reported and introduce no new information. Normally they are submitted on invitation by the editor of the journal. 3) Choose the target journal.  A common question is how to select the right journal for your work. Do not gamble by scattering your manuscript to many journals at the same time. Only submit once and wait for the response of the editor and the reviewers. 4) Pay attention to journal requirements in the Guide for Authors 5) Pay attention to the structure of the paper.  A section that enables indexing and searching the topics, making the paper informative, attractive and effective. It consists of theTitle, the Authors (and affiliations), theAbstract and the Keywords.  A section that includes the main text, which is usually divided into: Introduction, Methods, Results, Discussion and Conclusions.  A section that includes the Acknowledgements, References, and Supplementary Materials or annexe 6. Understand publication ethics to avoid violations. https://www.elsevier.com/connect/six-things-to-do-before-writing-your-manuscript http://journalfinder.elsevier.com/
  • 34. 1) You can disagree, as long as you explain  Explaining why you disagree will help the reviewer and editor understand your point of view and ultimately help them make an informed decision about your paper  Don't fall into the trap of writing to the editor to say that the reviewer is crazy, or incompetent. Make it a factual response. You should have a complete, solid and polite rebuttal to the editor. Write in such a manner that your response can be forwarded to the reviewer – editors love copy pasting." 2) Spell it out  The simplest way to ensure your responses are informative is to "copy paste each reviewer comment, and type your response below it. If you do so, you should be very specific. So if the reviewer says 'the discussion section is not clear', it's not enough to say 'we changed the discussion section'. What you should say is 'we changed the discussion section on page 24, lines 7- 23'. That makes it clear to the editor what you have changed, and when it goes back to the reviewer, the reviewer sees it immediately and you create a win-win situation".3) Don't forget to make the changes One of the biggest mistakes made by authors is to respond to all the comments, but forget to actually update the paper.
  • 35.  A cover letter for a revised manuscript should be sent to the editor along with the author’s responses to the reviewer comments.This letter is often called the response letter or the rebuttal letter.  Most manuscripts have to be revised at least once before they are accepted by a journal.  It is important to compose a good response letter to accompany the revised manuscript. A response letter or rebuttal letter can be written in two ways:  You write a cover letter and attach a separate document in which you have addressed the reviewer comments.  Alternatively, your rebuttal letter can be divided into two sections: an introductory part addressed to the journal editor and a second part containing detailed responses to the reviewer comments. Addressing reviewer comments can be a difficult task, especially, if there are many comments and the comments are long. Next slides e are a few things to keep in mind when addressing reviewer comments:
  • 36.  Address each and every point raised by the editor and reviewers: Copy every single comment in your rebuttal letter and write your reply immediately after each point in a clear and concise manner. Make sure that not a single point raised by the reviewers/editor goes unanswered. Even if you do not agree with a point or have not made the change suggested, please mention that and provide a reason for your decision.  Provide point-by-point responses: Number the reviewers’ points and respond to them sequentially. Highlight the corresponding changes in the manuscript or refer to the line numbers in the original and revised manuscripts. Consider setting the reviewer comments in bold to distinguish them from your responses.  Categorize the reviewers’ comments: If there are too many comments, it would help if you separate the comments into categories. For example, all the comments related to methodology could be grouped together, all related to language could be under one category, etc. If you decide to do that, make sure you add a sentence such as “I have separated my responses to the reviewers’ comments according to several categories in order to achieve an integrated ap  If comments are in the form of paragraphs, split them into points: If the reviewers’ comments are in the form of large paragraphs, divide them into separate points so that you can address them individually. If you are not sure of what a particular comment means, begin your response by explaining what you have understood from the comment.proach in my responses.”
  • 37.  In case you feel the reviewer has misunderstood something, clarify politely: Reviewers are experts who have extensive knowledge of their field; therefore, if you feel that a reviewer has misunderstood certain parts, it is likely to be due to lack of clarity in your presentation. In such cases, point out the misunderstanding politely and provide the necessary clarification. For instance, you could write: “I am sorry that this part was not clear in the original manuscript. I should have explained that….I have revised the contents of this part.”  If you cannot address a point, give a reason: If you cannot address any of the reviewers’ concerns, explain why you cannot do it, for instance, if the reviewer has asked you to provide additional data or conduct additional experiments, which you feel are not necessary. Avoid giving personal reasons like lack of funds or lack of time as reasons. Do not show a negative attitude. Be respectful in your reply. First, thank the reviewer for his/her in-depth analysis and useful comments. Then, explain where you feel you cannot completely agree with the reviewer’s suggestion. Your answer should be clear and logical and should be backed by evidence.  When adding new data or figures, mention their location in the manuscript: If you have included new data, tables, figures, etc., indicate where you have added the information: mention page numbers, figure panels, etc. If required, attach supplementary material so that the reviewer/editor has everything that he/she needs and does not have to go searching for the material.  Maintain a polite and respectful tone throughout: Remember that the reviewers have spent a lot of time and effort in evaluating your manuscript. Even if some of the comments appear to be negative, do not take them personally. The reviewers are critiquing your work, not you, and their inputs are value additions to your work. Be polite and respectful in your tone even if you feel that some of the comments are unfavorable or unreasonable. Sometimes some reviewers may have conflicting views. But remember that each of them will read your rebuttal letter, so it is best to be equally polite to all the reviewers. The tone of the cover letter is very important.
  • 38.  Conclude the letter appropriately: Be careful of how you end the rebuttal letter. A concluding sentence such as the following may sound overly conceited: "Since all the corrections have been made, we hope the manuscript will now be accepted without any further changes.” A straightforward but polite ending would be “We look forward to hearing from you regarding our submission. We would be glad to respond to any further questions and comments that you may have." Such an ending is formal, polite, and reflects a willingness to make further changes if required. http://www.editage.com/insights/how-to-write-a-great-rebuttal-letter?regid=1487525495
  • 39.  Content of the article is not within the scope of the journal  Non-conformity with journal style, format, or guidelines  Duplication or large overlap with existing work or apparent plagiarism  Results are not novel or significant enough; they lead to only an incremental advance in field  Article is too specialized/in-depth or superficial  Limited interest to journal target audience  Poor quality of research  Results or interpretation are too preliminary or speculative  Lack of clarity/conciseness in presentation There could be without review: many reasons for rejection
  • 40.  Cite your past work when it is relevant to a new manuscript. However, do not reference every paper you have written just to increase your citation count.  Carefully choose your keywords. Choose keywords that researchers in your field will be searching for so that your paper will appear in a database search.  Use your keywords and phrases in your title and repeatedly in your abstract. Repeating keywords and phrases will increase the likelihood your paper will be at the top of a search engine list, making it more likely to be read.  Use a consistent form of your name on all of your papers. Using the same name on all of your papers will make it easier for others to find all of your published work. If your name is very common, consider getting a research identifier, such as an ORCID. You can provide your ORCID in your email signature and link that ID to your publication list so that anyone you email has access to your publications.  Make sure that your information is correct. Check that your name and affiliation are correct on the final proofs of your manuscript and check that the paper’s information is accurate in database searches.  Make your manuscript easily accessible. If your paper is not published in an open-access journal, post your pre- or post- publication prints to a repository.  Share your data. There is some evidence that sharing your data can increase your citations. Consider posting to data sharing websites, such as Figshare or SlideShare, or contributing to Wikipedia and providing links to your published manuscripts.  Present your work at conferences. Although conference presentations are not cited by other others, this will make your research more visible to the academic and research communities. Check out these tips for making the most of your next research conference.  Use social media. Provide links to your papers on social media (e.g., Facebook, Twitter, Academia.edu, ResearchGate, Mendel ey) and your university profile page.  Actively promote your work. Talk to other researchers about your paper, even ones not in your field, and email copies of your paper to researchers who may be interested. Create a blog or a website dedicated to your research and share it.
  • 41.
  • 42.
  • 43.
  • 44. http://journalfinder.elsevier.com Helps inexperienced authors to select the correct journals for their papers Helps authors working in multidisciplinary fields identify possible journals Highlights journals that offer open-access options
  • 45. 1. You must address all comments • You can’t pick-and-choose which comments to address • Even minor comments need to be addressed 2. Address does not always mean change • You and your co-authors should decide what to change, and what to defend • Often, changing is the easiest route (demonstrates openness to suggestions)
  • 46. 3. Change does not always mean revamp • Easy changes include:  Rewording  Adding extra references  Adding an extra paragraph, table, or figure  Adding an appendix • More difficult changes include:  Modifying your central hypothesis  Modifying your main algorithm  Redoing an experiment
  • 47. 4. Always change technical errors • It’s the reviewer’s job to find these • Even minor errors can cast doubt 5. Always change errors in references • Skilled reviewers know the history better than newer authors • You don’t want to get off on the wrong foot with experts in the field by not citing the correct papers in the correct order
  • 48. 6. Always change parts which yielded “I didn’t understand”-type comments • If the reviewer didn’t understand it, the readers might not either • The effort required to defend this point will be more than the effort required to change the paper • “I didn’t understand” is a polite way of saying “you didn’t explain clearly enough”
  • 49. 7. Always change parts which are have been mentioned by multiple reviewers • If two or more reviewers make similar comments, the readers will likely have the same comments • Repeated comments stand out to the editor • The effort required to defend this point will be more than the effort required to change the paper
  • 50.  Divide the comments into two categories: 1. Easy changes 2. Difficult changes  Do the difficult changes first  This might take some time (especially if you need to repeat an experiment)  Easy changes might be eliminated  Consult with your co-authors on changes
  • 51. Reviewer did not like the memoryless Gaussian assumption
  • 52. Reviewer did not like the memoryless Gaussian assumption Quick fix: Use a distribution-dependent parameter
  • 53.  Letter to the editor  Summary of changes/defenses  Write this last  Letters to each of the reviewers  Responses to each comment  Write these first  Letter to typesetter (optional)
  • 54. February 5, 2003 Dear Dr. Said: Enclosed please find documents which contain our responses to the reviewers of manuscript TIP-00290- 2003 "Dynamic Contrast-Based Quantization for Lossy Wavelet Image Compression," D. M. Chandler and S. S. Hemami. We have modified the manuscript to directly address all of the comments of the reviewers. The modifications are detailed in the individual letters to the reviewers. (continued)
  • 55. To summarize our changes: • We have performed and added the results of a psychophysical experiment... (Reviewers 1, 2, and 4) • We have reworded our claims about the images produced... (Reviewers 2 and 4) • We have generalized our rate-distortion function to account for... (Reviewers 3 and 4) • We have added an appendix which shows the derivation of the approximation... (Reviewer 4) (continued)
  • 56. We sincerely appreciate the helpful comments and suggestions. Thank you for facilitating this submission. Sincerely, Damon M. Chandler School of Electrical and Computer Engineering Oklahoma State University Stillwater, OK 74074
  • 57.  Open by thanking the reviewer for his/her time during the review  Then, add a summary of changes  Next, make a dialogue-type list of comments and responses  For chan ges: Indicate location (page and paragraph numbers)  For defenses: Be polite and write professionally (don’t write anything you wouldn’t say in person)  Thank the reviewer abundantly (but don’t overdo it)  Close by thanking the reviewer again
  • 58. Responses to Reviewer 2 of TIP-00290-2003 “Dynamic Contrast-Based Quantization for Lossy Wavelet Image Compression,” D. M. Chandler and S. S. Hemami Thank you for taking the time to review this paper. We have addressed all of your comments, as described in the dialogue below. In summary, we have performed a psychophysical experiment to assess the bit-savings afforded by using the proposed algorithm over baseline JPEG-2000. This experiment and its results are described in Section VI.D and Table III. (continued)
  • 59. Reviewer: <Insert reviewer’s comment> Authors: <Insert your response>
  • 60. Reviewer: Each subband is assumed to be a "memoryless Gaussian source". This assumption is not very realistic. It would be interesting to know the impact of this assumption on the performance of the proposed method. Authors: Thank you for pointing this out. We have removed the memoryless Gaussian assumption, and we have accordingly modified the rate-distortion function via a parameter which depends on the probability density function of the subband (Page 24, 3rd paragraph).
  • 61. Reviewer: Based on Fig. 6, the improvements of the proposed approach do not appear to be very impressive. Even though there are definitely some improvements, it is not clear how significant they are. Authors: We are hoping that the printed journal version of this figure will be able to better- reproduce the visual gains. In addition, we have now made the images available online. We have also presented the results of a psychophysical experiment to quantify the bit-savings afforded by using the proposed algorithm over baseline JPEG- 2000.
  • 62. Reviewer: On page 3, lines 1 to 3, this statement is incorrect as it indicates that existing quantization strategies rely only on a predetermined set of quantizer step sizes. This is not correct as there are existing perceptual-based algorithms that dynamically and adaptively compute the quantizer step sizes such as the work in Reference [10] (which also appeared as a journal version in the IEEE ITIP, 2000). So, this statement should be removed or rewritten. Authors: Thank you for catching this. We have removed the statement. We have also updated Ref. 10 to refer to the journal version of the research.
  • 63. Reviewer: On page 2, the reviewer especially does not agree with item 1 where the authors stated that most experiments involving the HVS have quantified contrast sensitivity based only on simple targets. The authors imply in item 1 that more complex natural-image targets are needed which is not correct. Also, Item 3 should be modified as several perceptual-based algorithm exist which account for masking in addition to the regular CSF and this include references [8] and [10].
  • 64. Authors: We appreciate and agree with many of your points. We do believe however, that our methodology is more of a top-down approach that has offered useful insights into the overall response of the HVS to the types of distortions induced via wavelet-based image compression presented against natural-image backgrounds. We did not intend Items 1, 2 and 3 to characterize all HVS-based compression algorithms, and we apologize if it came across as such. As per your suggestions, we have added specific references to Items 1, 2, and 3. To Item 1, we have added references...
  • 65. We sincerely appreciate your insightful and constructive comments and suggestions. We believe that these have greatly strengthened the paper. Thank you again for taking the time to review this paper. Sincerely, Damon M. Chandler School of Electrical and Computer Engineering Oklahoma State University Stillwater, OK 74074
  • 66.  When a journal displays the “decision in process” status, it means that the editorial board is in the process of making the final decision about your paper. At this stage when the journal decision is in process, the editor will go through the revised manuscript and your replies to the reviewer comments before coming to a decision. The editor might decide to consult the peer reviewers once more. Sometimes, there may be quite a few papers lined up before yours. This is why this stage might take long. There’s no specific time frame for this; the time may vary depending on the journal and the field. I think it would be reasonable to write to the editor to inquire about the status of your paper if you haven’t received a response even a month after the last status change.
  • 67. When I cite some other work, I'm not sure how I should write the reference. Should I use the name of the first author or that of the correspondence author before "et al."?
  • 68.  At the time of submission of a manuscript, journals require you to choose one of the authors as the corresponding author. The corresponding author is the one who receives all notifications from the journal including manuscript status, reviewers’ comments, and the final decision. Although journals usually perceive the role of a corresponding author as purely administrative, this role is associated with seniority in some cultures. The corresponding author is often the group leader or a senior researcher whose contact address is not likely to change in the near future. In cases where the main contributor of the study is also the group leader, he or she can be both first and corresponding author for the study.
  • 69.  Essentially, the second word of the term et al takes on a ‘period’ (et al.) irrespective of whether it falls in the middle of a sentence.
  • 70.  1. The title of your research paper should be brief and attractive.  A good title tells the reader what the research is about briefly and clearly. Omit unnecessary details in the title: for example, it is not necessary to mention the sample size of your experimental or control groups or the manufacturing details of the equipment you used in the title of your research paper, unless this information is relevant to the content. Often authors use active or direct verbs (e.g. “x causes y” instead of “y is caused by x”). Moreover, a good title for a research paper is typically around 10 to 12 words long. If your journal has a word count restriction for your title, ensure that you follow it. A lengthy title is likely to take your readers’ attention away from an important point.  2. Avoid using abbreviations or jargon that might put off the reader.  Unless an abbreviation is universally well- known, e.g., AIDS or UNICEF, avoid including it in the title. Lesser-known or highly specific abbreviations that may not be immediately familiar to readers might discourage them from taking an interest in your research paper Avoid: MMP expression profiles cannot distinguish between normal and early osteoarthritic synovial fluid Better: Matrix metalloproteinase protein expression profiles cannot distinguish between normal and early osteoarthritic synovial fluid
  • 71. Q2) What is salami slicing? Q3) Why is duplicate publication a problem? Q4)What is a simultaneous submission? Why is simultaneous submission a problem? ‫المصرية‬ ‫البحثية‬ ‫العلمية‬ ‫للمجمعة‬ ‫الثقافية‬ ‫اللجنة‬ ‫تحيات‬ ‫مع‬
  • 72. - It refers to the practice of partitioning a large study that could have been reported in a single research article into smaller published articles. - In other words, it means breaking up a single research paper into their “least publishable units,” with each paper reporting different findings from the same study. - A set of papers are referred to as salami publications when more than one paper covers the same population, methods, and research question. ‫محاضرات‬ ‫سلسلة‬ ‫من‬ ‫العلمى‬ ‫البحث‬ ‫مهارات‬
  • 73.
  • 74.  If the results of a single complex study are best presented as a ‘cohesive’ single whole, they should not be partitioned into individual papers. Furthermore, if there is any doubt as to whether a paper submitted for publication represents fragmented data, authors should enclose other papers (published or unpublished) that might be part of the paper under consideration. However, it is not always incorrect to divide a research project into multiple publications.  This can be done if the dataset is too large or if the study has a secondary finding that was not discussed in the first paper. Whenever researchers decide to divide a single study into smaller segments, they should understand that it should be done only in the best interests of research, that is, if it genuinely benefits the audience by being published as smaller segments. However, in such cases, the authors should always disclose this and provide copies of related studies at the time of submission.
  • 75.
  • 76. • Be a good academic citizen • Know what you’re doing • Keep track of what you’ve done • Back everything up • Don’t Lie (fabrications) • Don’t Cheat (falsifications) • Don’t Steal (plagiarism) • Publish your discoveries