This is a slightly modified version of my earlier presentation form the research integrity workshop in Catania, Italy, October 2016. An image, copyrighted by University College Cork, was contested for copyright by their professor Max Dow, who pushed through a DMCA takedown action. You will sure appreciate what I replaced that image with ;-)
Research misconduct: science's self-administered poisonLeonid Schneider
Microb&Co Workshop 7ICME, October 2016,
Catania October 2016 Talk 1
How research misconduct happens and how it can be prevented. The roles of universities, journals and funders
The history of biological and medical research is unfortunately not without shameful episodes of misconduct. These slides, from a talk given at an event organised by the UK Centre for Biosciences, describe a number of classic, curious and/or contemporary examples of research misconduct. A selection of these would be distinguishing good and poor practice during teaching of undergraduate and/or postgraduate students.
In the race to publish more papers, some researchers indulge in unethical practices, one of which is salami slicing. Salami slicing means fragmenting one study and publishing it in multiple papers. This practice is considered improper and can affect your career, besides being damaging to science. This SlideShare explains in detail what salami slicing is and why it is considered unethical. It also includes opinions of journal editors on the issue.
This is a slightly modified version of my earlier presentation form the research integrity workshop in Catania, Italy, October 2016. An image, copyrighted by University College Cork, was contested for copyright by their professor Max Dow, who pushed through a DMCA takedown action. You will sure appreciate what I replaced that image with ;-)
Research misconduct: science's self-administered poisonLeonid Schneider
Microb&Co Workshop 7ICME, October 2016,
Catania October 2016 Talk 1
How research misconduct happens and how it can be prevented. The roles of universities, journals and funders
The history of biological and medical research is unfortunately not without shameful episodes of misconduct. These slides, from a talk given at an event organised by the UK Centre for Biosciences, describe a number of classic, curious and/or contemporary examples of research misconduct. A selection of these would be distinguishing good and poor practice during teaching of undergraduate and/or postgraduate students.
In the race to publish more papers, some researchers indulge in unethical practices, one of which is salami slicing. Salami slicing means fragmenting one study and publishing it in multiple papers. This practice is considered improper and can affect your career, besides being damaging to science. This SlideShare explains in detail what salami slicing is and why it is considered unethical. It also includes opinions of journal editors on the issue.
Through the course of your research, right until you get your your paper published, there will be several individuals who have contributed to your research project in different ways. However, not all of these individuals can be considered as authors of your paper. So who qualifies as an author on your manuscript?
This slide deck will clarify who is an author, who does not qualify as an author of your paper and also three unethical authorship-related practices that you must avoid.
Researcher KnowHow session presentation by Sarah Roughley Barake, Scholarly Communications Librarian at the University of Liverpool.
Covers:
*What to consider when choosing a journal
*Tools to help you choose
*Where NOT to publish
When publishing research, one needs to be aware of all such actions that are unethical and hence, must be avoided. This presentation gives an overview of the topic.
In research, ethics provides guidelines for the responsible conduct of research. Moreover, ethics allows researchers and scholars to further educate themselves and monitor their activities in the conduct of research so as to ensure a high ethical standard.
While we depend more and more on research to make our clinical decisions, research misconduct is a malady that seriously undermines the credibility of the evidence generated. It is universal, ubiquitous and more common than we know
Breaking down boundaries and blazing new trails, Marie Curie conducted pioneering research in radioactivity.
Register to explore the whole course here: https://school.bighistoryproject.com/bhplive?WT.mc_id=Slideshare12202017
Talk 2 at Research Integrity workshop at Max Planck Institute for Plant Breeding Research in Cologne, April 6th 2018
http://www.mpipz.mpg.de/events/13302/4358571
CEPLAS Cologne June 2017: Research misconduct; science‘s self administered ...Leonid Schneider
Workshop presentation at International CEPLAS Summer School 2017 – „Emerging Frontiers in Plant Sciences“ June 5th – 9th, 2017 Sportschule Hennef, Germany
Through the course of your research, right until you get your your paper published, there will be several individuals who have contributed to your research project in different ways. However, not all of these individuals can be considered as authors of your paper. So who qualifies as an author on your manuscript?
This slide deck will clarify who is an author, who does not qualify as an author of your paper and also three unethical authorship-related practices that you must avoid.
Researcher KnowHow session presentation by Sarah Roughley Barake, Scholarly Communications Librarian at the University of Liverpool.
Covers:
*What to consider when choosing a journal
*Tools to help you choose
*Where NOT to publish
When publishing research, one needs to be aware of all such actions that are unethical and hence, must be avoided. This presentation gives an overview of the topic.
In research, ethics provides guidelines for the responsible conduct of research. Moreover, ethics allows researchers and scholars to further educate themselves and monitor their activities in the conduct of research so as to ensure a high ethical standard.
While we depend more and more on research to make our clinical decisions, research misconduct is a malady that seriously undermines the credibility of the evidence generated. It is universal, ubiquitous and more common than we know
Breaking down boundaries and blazing new trails, Marie Curie conducted pioneering research in radioactivity.
Register to explore the whole course here: https://school.bighistoryproject.com/bhplive?WT.mc_id=Slideshare12202017
Talk 2 at Research Integrity workshop at Max Planck Institute for Plant Breeding Research in Cologne, April 6th 2018
http://www.mpipz.mpg.de/events/13302/4358571
CEPLAS Cologne June 2017: Research misconduct; science‘s self administered ...Leonid Schneider
Workshop presentation at International CEPLAS Summer School 2017 – „Emerging Frontiers in Plant Sciences“ June 5th – 9th, 2017 Sportschule Hennef, Germany
Open Research Practices in the Age of a Papermill PandemicDorothy Bishop
Talk given to Open Research Group, Maynooth University, October 2022.
Describes the phenomenon of large-scale fraudulent science publishing (papermills), and discusses how open science practices can help tackle this.
Dismissive Reviews, Citation Cartels, and the Replication Crisis.pptxRichard P Phelps
This interdisciplinary theme of the Conference addresses two of the very serious and controversial challenges of modern-day research, namely dismissive reviews (unsupported declarations of scholars declaring no previous research exists on certain topics, despite evidence of the contrary) and „citation cartels” (groups of scholars who agree to cite each others’ work and none of the other available literature). These practices have a considerable impact in the quality and ethical
aspects of research, and are also reflected in the replicability crisis.
This lecture talks about the importance of evidence in scientific, business, and innovation research. It lists down important examples to carry this process in perspective of the problem statement.
Lecture on research integrity at Natural Sciences faculty, University of South Bohemia at Ceske Budejovice, Czechia, 11 December 2023
https://www.prf.jcu.cz/cz/fakulta/aktualne/prednaska-lecture-defenestration-of-science-fraud
Advice to junior researchers: High or low road to success?James Coyne
A presentation from the International Psycho-Oncology Society Conference in Rotterdam invited by the IPOS Early Career Professionals Special Interest Group.
Trachea transplanters without borders, Liverpool, June 2018Leonid Schneider
Seminar at Research integrity event on research integrity, organised by Patricia Murray at University of LIverpool.
Story of deadly regenerative medicine and trachea transplants of Paolo Macchiarini and Martin Birchall
Liverpool, 1.06.2018
Research misconduct in plant science: infectious and toxic (Cologne 6.4.2018)Leonid Schneider
Talk 1 at Research Integrity workshop at Max Planck Institute for Plant Breeding Research in Cologne, April 6th 2018
http://www.mpipz.mpg.de/events/13302/4358571
On research ethics, regenerative medicine hype and Paolo Macchiarini’s dead p...Leonid Schneider
Seminar on research integrity and ethics of human experiments, presented at the University of Milan (26.09.2017) and University of Insubria, Varese (27.09.2017).
Video here:
https://www.youtube.com/watch?v=MrKk-IDp0hM&feature=youtu.be
Liverpool, May 23rd 2017. The Paolo Macchiarini scandal: from bad stem cell science to bad regenerative medicine to dead patients
Audio recording and video of this talk (with slides) here:
https://www.youtube.com/watch?v=cwtuWP33AJw
ESR spectroscopy in liquid food and beverages.pptxPRIYANKA PATEL
With increasing population, people need to rely on packaged food stuffs. Packaging of food materials requires the preservation of food. There are various methods for the treatment of food to preserve them and irradiation treatment of food is one of them. It is the most common and the most harmless method for the food preservation as it does not alter the necessary micronutrients of food materials. Although irradiated food doesn’t cause any harm to the human health but still the quality assessment of food is required to provide consumers with necessary information about the food. ESR spectroscopy is the most sophisticated way to investigate the quality of the food and the free radicals induced during the processing of the food. ESR spin trapping technique is useful for the detection of highly unstable radicals in the food. The antioxidant capability of liquid food and beverages in mainly performed by spin trapping technique.
hematic appreciation test is a psychological assessment tool used to measure an individual's appreciation and understanding of specific themes or topics. This test helps to evaluate an individual's ability to connect different ideas and concepts within a given theme, as well as their overall comprehension and interpretation skills. The results of the test can provide valuable insights into an individual's cognitive abilities, creativity, and critical thinking skills
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
Toxic effects of heavy metals : Lead and Arsenicsanjana502982
Heavy metals are naturally occuring metallic chemical elements that have relatively high density, and are toxic at even low concentrations. All toxic metals are termed as heavy metals irrespective of their atomic mass and density, eg. arsenic, lead, mercury, cadmium, thallium, chromium, etc.
The use of Nauplii and metanauplii artemia in aquaculture (brine shrimp).pptxMAGOTI ERNEST
Although Artemia has been known to man for centuries, its use as a food for the culture of larval organisms apparently began only in the 1930s, when several investigators found that it made an excellent food for newly hatched fish larvae (Litvinenko et al., 2023). As aquaculture developed in the 1960s and ‘70s, the use of Artemia also became more widespread, due both to its convenience and to its nutritional value for larval organisms (Arenas-Pardo et al., 2024). The fact that Artemia dormant cysts can be stored for long periods in cans, and then used as an off-the-shelf food requiring only 24 h of incubation makes them the most convenient, least labor-intensive, live food available for aquaculture (Sorgeloos & Roubach, 2021). The nutritional value of Artemia, especially for marine organisms, is not constant, but varies both geographically and temporally. During the last decade, however, both the causes of Artemia nutritional variability and methods to improve poorquality Artemia have been identified (Loufi et al., 2024).
Brine shrimp (Artemia spp.) are used in marine aquaculture worldwide. Annually, more than 2,000 metric tons of dry cysts are used for cultivation of fish, crustacean, and shellfish larva. Brine shrimp are important to aquaculture because newly hatched brine shrimp nauplii (larvae) provide a food source for many fish fry (Mozanzadeh et al., 2021). Culture and harvesting of brine shrimp eggs represents another aspect of the aquaculture industry. Nauplii and metanauplii of Artemia, commonly known as brine shrimp, play a crucial role in aquaculture due to their nutritional value and suitability as live feed for many aquatic species, particularly in larval stages (Sorgeloos & Roubach, 2021).
Nucleophilic Addition of carbonyl compounds.pptxSSR02
Nucleophilic addition is the most important reaction of carbonyls. Not just aldehydes and ketones, but also carboxylic acid derivatives in general.
Carbonyls undergo addition reactions with a large range of nucleophiles.
Comparing the relative basicity of the nucleophile and the product is extremely helpful in determining how reversible the addition reaction is. Reactions with Grignards and hydrides are irreversible. Reactions with weak bases like halides and carboxylates generally don’t happen.
Electronic effects (inductive effects, electron donation) have a large impact on reactivity.
Large groups adjacent to the carbonyl will slow the rate of reaction.
Neutral nucleophiles can also add to carbonyls, although their additions are generally slower and more reversible. Acid catalysis is sometimes employed to increase the rate of addition.
Deep Behavioral Phenotyping in Systems Neuroscience for Functional Atlasing a...Ana Luísa Pinho
Functional Magnetic Resonance Imaging (fMRI) provides means to characterize brain activations in response to behavior. However, cognitive neuroscience has been limited to group-level effects referring to the performance of specific tasks. To obtain the functional profile of elementary cognitive mechanisms, the combination of brain responses to many tasks is required. Yet, to date, both structural atlases and parcellation-based activations do not fully account for cognitive function and still present several limitations. Further, they do not adapt overall to individual characteristics. In this talk, I will give an account of deep-behavioral phenotyping strategies, namely data-driven methods in large task-fMRI datasets, to optimize functional brain-data collection and improve inference of effects-of-interest related to mental processes. Key to this approach is the employment of fast multi-functional paradigms rich on features that can be well parametrized and, consequently, facilitate the creation of psycho-physiological constructs to be modelled with imaging data. Particular emphasis will be given to music stimuli when studying high-order cognitive mechanisms, due to their ecological nature and quality to enable complex behavior compounded by discrete entities. I will also discuss how deep-behavioral phenotyping and individualized models applied to neuroimaging data can better account for the subject-specific organization of domain-general cognitive systems in the human brain. Finally, the accumulation of functional brain signatures brings the possibility to clarify relationships among tasks and create a univocal link between brain systems and mental functions through: (1) the development of ontologies proposing an organization of cognitive processes; and (2) brain-network taxonomies describing functional specialization. To this end, tools to improve commensurability in cognitive science are necessary, such as public repositories, ontology-based platforms and automated meta-analysis tools. I will thus discuss some brain-atlasing resources currently under development, and their applicability in cognitive as well as clinical neuroscience.
Phenomics assisted breeding in crop improvementIshaGoswami9
As the population is increasing and will reach about 9 billion upto 2050. Also due to climate change, it is difficult to meet the food requirement of such a large population. Facing the challenges presented by resource shortages, climate
change, and increasing global population, crop yield and quality need to be improved in a sustainable way over the coming decades. Genetic improvement by breeding is the best way to increase crop productivity. With the rapid progression of functional
genomics, an increasing number of crop genomes have been sequenced and dozens of genes influencing key agronomic traits have been identified. However, current genome sequence information has not been adequately exploited for understanding
the complex characteristics of multiple gene, owing to a lack of crop phenotypic data. Efficient, automatic, and accurate technologies and platforms that can capture phenotypic data that can
be linked to genomics information for crop improvement at all growth stages have become as important as genotyping. Thus,
high-throughput phenotyping has become the major bottleneck restricting crop breeding. Plant phenomics has been defined as the high-throughput, accurate acquisition and analysis of multi-dimensional phenotypes
during crop growing stages at the organism level, including the cell, tissue, organ, individual plant, plot, and field levels. With the rapid development of novel sensors, imaging technology,
and analysis methods, numerous infrastructure platforms have been developed for phenotyping.
BREEDING METHODS FOR DISEASE RESISTANCE.pptxRASHMI M G
Plant breeding for disease resistance is a strategy to reduce crop losses caused by disease. Plants have an innate immune system that allows them to recognize pathogens and provide resistance. However, breeding for long-lasting resistance often involves combining multiple resistance genes
How anonymous post-publication peer review uncovers bad science
1. How anonymous
post-publication peer review
uncovers bad science
Leonid Schneider,
science journalist
with Laborjournal
leonid.schneider@gmail.com
Twitter: @schneiderleonid
2. Junior scientists are often told by their advisors:
- If you can deliver this result,
you will publish a nice paper and have a job
- If you don’t deliver this result,
you will not publish any paper and have no job
Is bad science
individual or systemic failure?
3. $$$
Authors and institutions have little incentive to
produce reliable quality science
Paper-to-funding convertion
Funding used for research…
4. Journals and funding agencies prefer
simplistic, but sensationalist “break-through” science
• Cancer cure!
• Stem cells /”Reprogramming”
• One-Gene-Phenotype models
• Translational/Commercial
potential
Biological systems
are very complicated,
but in biological papers
simplicity rules!
5. Scientists occasionally help data to fit their
theoretical model for a publication
• Selective data acquisition and evaluation
(very common)
• “Adjustments” or manipulation of data
(less common)
• Data falsification / fraud
(very rare)
6. Peer review weeds out bad science. Really?
• Data is submitted on trust as
being honest/reliable
• Peer Reviewers are scientist
colleagues, not data specialists
• Peer Reviewers only analyse
science, not data integrity
• Peer review is not always done
diligently enough
How did this pass
peer review????
8. - Journal Editors
- Decide on Quality,
Novelty, Impact
- Appoint peer
reviewers
- Make final decisions
- Peer Reviewers
- 1-4 people
- Unknown to authors
or readers
- Potential COI,
personal animosities,
lack of competence…
$$$
Too many financial and personal interests involved
Years and years of research…
10. A peer-reviewed paper is a badge of honour
Things surely changed for him
since he published in Nature…
• Publications are public
evidence of success
• They are to be admired
and not questioned
• Often not the content
counts, but where it is
published
11. Scientists waste time, money and their careers trying to
reproduce unreliable or manipulated results
• Poor reproducibility in combination with high competition
undermines productivity, but also work moral, trust and
motivation
• It leads to even more data manipulation and fraud in science
12. What do you do if you spot data irregularities or
irreproducibility in a published paper?
1. Write to authors
2. Write to journal
3. Write to authors’
institution
13. What happens if a published paper is reported
to be wrong or even contain manipulated data?
1. Correction (rare)
2. Retraction (even rarer)
3. Nothing (most common)
14. Your paper is wrong,
professor!
See you at the
exam…
Individual criticisms are unwelcome and dangerous
• Financial interests behind publications
prevent institutional investigations
• Institutions often refuse to react to
anonymous hints
• Whistle-blowers are often punished or
dismissed as incompetent or malicious
15. Solution: make valid criticisms public,
but anonymously!
• Publicly available valid criticisms
are much more difficult to be
ignored
• Whistle-blowers are protected by
the anonymity under which they
are free to post concerns
19. Or, you can post evidence of data irregularities on PubPeer,
also anonymously
20. I have some issues
with your paper, Sir!
Pros and cons of anonymous commenting
(aka witch-hunts)
• Protects whistle-blowers
• Only objective evidence and
arguments matter, not who has
raised them or why or where
• Unsubstantiated claims,
personal insults
• Sock-puppeting (also by authors!)
Against:
For:
22. Blog post at Laborjournal about this interesting and
useful experience:
http://www.laborjournal.de/blog/?p=8281
Autors also reply to
PubPeer criticisms, often
constructively
23. STAP: one of the biggest fraud scandals uncovered,
thanks to post-publication peer review on PubPeer
24. Photo credit: Maigrot/REA
The case Olivier Voinnet
• PhD with Sir David
Baulcombe at
The Sainsbury
Laboratory, Norwich
• Research leader at
CNRS institute in
Strasbourg (age 33)
• Professor at ETH
Zürich (since 2010)
25. Photo credit: Maigrot/REA
The case Olivier Voinnet
• EMBO Gold Medal
(2009)
• EMBO Member
• EMBO Young
Investigator grant
• ERC start-up grant
• Max-Rössler-Prize
(ETH Zürich, 2013)
26. It started with people finding irregularities in
David Baulcombe’s papers