This document summarizes a thesis that examines techniques for discriminating between dyed cotton fibers. Current FBI protocols for fiber analysis rely on dye extraction and microspectrophotometry, but these often fail to adequately distinguish fibers. The thesis applies alternative techniques like liquid chromatography-mass spectrometry and fluorescence spectroscopy to fibers that could not be differentiated through standard analysis. Preliminary results found these enhanced tests could uniquely identify all fibers, improving discrimination from 60% using normal protocols to 100%. The application of these new analytical methods increases the evidentiary value of cotton fibers in criminal investigations.