Genetic male sterility (GMS) is a plant's inability to produce functional pollen grains, which is controlled by nuclear genes. There are several types of GMS including temperature sensitive (TGMS), photoperiod sensitive (PGMS), and transgenic GMS. TGMS and PGMS lines exhibit male sterility above or below certain temperature or photoperiod thresholds. Transgenic GMS uses foreign genes like Barnase/Barstar to induce sterility. GMS has been utilized for hybrid seed production in crops like rice, pigeonpea, tomato, and chilli by developing male sterile (A) and maintainer (B) lines. The XYZ system was also proposed for hybrid wheat production using alien chromosomes
Stability parameters for comparing varieties (eberhart and russell 1966)Dhanuja Kumar
Phenotype is a result of genotype, environment and GE interaction. GENOTYPE- environment interactions are of major
importance to the plant breeder in developing
improved varieties. The performance of a single variety is not the same in all the environments. To identify a genotype whose performance is stable across environments various models were proposed. One such model was proposed by EBERHART and RUSSELL in 1966. Even after decades, this model is still preferred over others and used till date for stability analysis.
Power Point is deals with the different aspects of Quantitative genetics in plant breeding it converse Basic Principles of Biometrical Genetics, estimation of Variability, Correlation, Principal Component Analysis, Path analysis, Different Matting design and Stability so on
Within the last twenty years, molecular biology has revolutionized conventional breeding techniques in all areas. Biochemical and Molecular techniques have shortened the duration of breeding programs from years to months, weeks, or eliminated the need for them all together. The use of molecular markers in conventional breeding techniques has also improved the accuracy of crosses and allowed breeders to produce strains with combined traits that were impossible before the advent of DNA technology
Stability parameters for comparing varieties (eberhart and russell 1966)Dhanuja Kumar
Phenotype is a result of genotype, environment and GE interaction. GENOTYPE- environment interactions are of major
importance to the plant breeder in developing
improved varieties. The performance of a single variety is not the same in all the environments. To identify a genotype whose performance is stable across environments various models were proposed. One such model was proposed by EBERHART and RUSSELL in 1966. Even after decades, this model is still preferred over others and used till date for stability analysis.
Power Point is deals with the different aspects of Quantitative genetics in plant breeding it converse Basic Principles of Biometrical Genetics, estimation of Variability, Correlation, Principal Component Analysis, Path analysis, Different Matting design and Stability so on
Within the last twenty years, molecular biology has revolutionized conventional breeding techniques in all areas. Biochemical and Molecular techniques have shortened the duration of breeding programs from years to months, weeks, or eliminated the need for them all together. The use of molecular markers in conventional breeding techniques has also improved the accuracy of crosses and allowed breeders to produce strains with combined traits that were impossible before the advent of DNA technology
Heterotic group “is a group of related or unrelated genotypes from the same or different populations, which display similar combining ability and heterotic response when crossed with genotypes from other genetically distinct germplasm groups.”
Multiple inbred founder lines are inter-mated for several generations prior to creating inbred lines, resulting in a diverse population whose genomes are fine scale mosaics of contributions from all founders.
The term balanced tertiary trisomic has three words of which (1) “trisomic” indicates the presence of extra chromosome, (2) “tertiary” indicates that the extra chromosome is a trans-located chromosome, and (3) “balanced” refers to the breeding behaviour of the trisomic.
Ramage defined the BTT as a tertiary trisomic constructed in such a way that the dominant allele of a marker gene, closely linked with the translocation breakpoint of the extra chromosome is carried on the extra chromosome, and the recessive allele is carried on the two normal chromosomes that constitute the diploid complement. The dominant marker gene may be located on the centromere segment or the trans-located segment of the extra chromosome.
Stability analysis and G*E interactions in plantsRachana Bagudam
Gene–environment interaction is when two different genotypes respond to environmental variation in different ways. Stability refers to the performance with respective to environmental factors overtime within given location. Selection for stability is not possible until a biometrical model with suitable parameters is available to provide criteria necessary to rank varieties / breeds for stability. Different models of stability are discussed.
1. STABILITY OF MALE STERILE LINES - ENVIRONMENTAL INFLUENCE ON STERILITY - EGMS - TYPES AND INFLUENCE ON THEIR EXPRESSION, GENETIC STUDIES.
2. PHOTO SENSITIVE GENETIC MALE STERILITY AND ITS USES IN HETEROSIS BREEDING
3. TEMPERATURE SENSITIVE GENETIC MALE STERILITY AND ITS USES IN HETEROSIS BREEDING
It comprises on mating designs used in plant breeding programs. 6 basic mating designs are briefly explained in it with their requirements as well limiting factors...
Heterotic group “is a group of related or unrelated genotypes from the same or different populations, which display similar combining ability and heterotic response when crossed with genotypes from other genetically distinct germplasm groups.”
Multiple inbred founder lines are inter-mated for several generations prior to creating inbred lines, resulting in a diverse population whose genomes are fine scale mosaics of contributions from all founders.
The term balanced tertiary trisomic has three words of which (1) “trisomic” indicates the presence of extra chromosome, (2) “tertiary” indicates that the extra chromosome is a trans-located chromosome, and (3) “balanced” refers to the breeding behaviour of the trisomic.
Ramage defined the BTT as a tertiary trisomic constructed in such a way that the dominant allele of a marker gene, closely linked with the translocation breakpoint of the extra chromosome is carried on the extra chromosome, and the recessive allele is carried on the two normal chromosomes that constitute the diploid complement. The dominant marker gene may be located on the centromere segment or the trans-located segment of the extra chromosome.
Stability analysis and G*E interactions in plantsRachana Bagudam
Gene–environment interaction is when two different genotypes respond to environmental variation in different ways. Stability refers to the performance with respective to environmental factors overtime within given location. Selection for stability is not possible until a biometrical model with suitable parameters is available to provide criteria necessary to rank varieties / breeds for stability. Different models of stability are discussed.
1. STABILITY OF MALE STERILE LINES - ENVIRONMENTAL INFLUENCE ON STERILITY - EGMS - TYPES AND INFLUENCE ON THEIR EXPRESSION, GENETIC STUDIES.
2. PHOTO SENSITIVE GENETIC MALE STERILITY AND ITS USES IN HETEROSIS BREEDING
3. TEMPERATURE SENSITIVE GENETIC MALE STERILITY AND ITS USES IN HETEROSIS BREEDING
It comprises on mating designs used in plant breeding programs. 6 basic mating designs are briefly explained in it with their requirements as well limiting factors...
Deep Behavioral Phenotyping in Systems Neuroscience for Functional Atlasing a...Ana Luísa Pinho
Functional Magnetic Resonance Imaging (fMRI) provides means to characterize brain activations in response to behavior. However, cognitive neuroscience has been limited to group-level effects referring to the performance of specific tasks. To obtain the functional profile of elementary cognitive mechanisms, the combination of brain responses to many tasks is required. Yet, to date, both structural atlases and parcellation-based activations do not fully account for cognitive function and still present several limitations. Further, they do not adapt overall to individual characteristics. In this talk, I will give an account of deep-behavioral phenotyping strategies, namely data-driven methods in large task-fMRI datasets, to optimize functional brain-data collection and improve inference of effects-of-interest related to mental processes. Key to this approach is the employment of fast multi-functional paradigms rich on features that can be well parametrized and, consequently, facilitate the creation of psycho-physiological constructs to be modelled with imaging data. Particular emphasis will be given to music stimuli when studying high-order cognitive mechanisms, due to their ecological nature and quality to enable complex behavior compounded by discrete entities. I will also discuss how deep-behavioral phenotyping and individualized models applied to neuroimaging data can better account for the subject-specific organization of domain-general cognitive systems in the human brain. Finally, the accumulation of functional brain signatures brings the possibility to clarify relationships among tasks and create a univocal link between brain systems and mental functions through: (1) the development of ontologies proposing an organization of cognitive processes; and (2) brain-network taxonomies describing functional specialization. To this end, tools to improve commensurability in cognitive science are necessary, such as public repositories, ontology-based platforms and automated meta-analysis tools. I will thus discuss some brain-atlasing resources currently under development, and their applicability in cognitive as well as clinical neuroscience.
Nutraceutical market, scope and growth: Herbal drug technologyLokesh Patil
As consumer awareness of health and wellness rises, the nutraceutical market—which includes goods like functional meals, drinks, and dietary supplements that provide health advantages beyond basic nutrition—is growing significantly. As healthcare expenses rise, the population ages, and people want natural and preventative health solutions more and more, this industry is increasing quickly. Further driving market expansion are product formulation innovations and the use of cutting-edge technology for customized nutrition. With its worldwide reach, the nutraceutical industry is expected to keep growing and provide significant chances for research and investment in a number of categories, including vitamins, minerals, probiotics, and herbal supplements.
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
In this webinar we give an overview of advanced applications of the IVM system in preclinical research. IVIM technology is a provider of all-in-one intravital microscopy systems and solutions optimized for in vivo imaging of live animal models at sub-micron resolution. The system’s unique features and user-friendly software enables researchers to probe fast dynamic biological processes such as immune cell tracking, cell-cell interaction as well as vascularization and tumor metastasis with exceptional detail. This webinar will also give an overview of IVM being utilized in drug development, offering a view into the intricate interaction between drugs/nanoparticles and tissues in vivo and allows for the evaluation of therapeutic intervention in a variety of tissues and organs. This interdisciplinary collaboration continues to drive the advancements of novel therapeutic strategies.
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
This presentation explores a brief idea about the structural and functional attributes of nucleotides, the structure and function of genetic materials along with the impact of UV rays and pH upon them.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
Multi-source connectivity as the driver of solar wind variability in the heli...Sérgio Sacani
The ambient solar wind that flls the heliosphere originates from multiple
sources in the solar corona and is highly structured. It is often described
as high-speed, relatively homogeneous, plasma streams from coronal
holes and slow-speed, highly variable, streams whose source regions are
under debate. A key goal of ESA/NASA’s Solar Orbiter mission is to identify
solar wind sources and understand what drives the complexity seen in the
heliosphere. By combining magnetic feld modelling and spectroscopic
techniques with high-resolution observations and measurements, we show
that the solar wind variability detected in situ by Solar Orbiter in March
2022 is driven by spatio-temporal changes in the magnetic connectivity to
multiple sources in the solar atmosphere. The magnetic feld footpoints
connected to the spacecraft moved from the boundaries of a coronal hole
to one active region (12961) and then across to another region (12957). This
is refected in the in situ measurements, which show the transition from fast
to highly Alfvénic then to slow solar wind that is disrupted by the arrival of
a coronal mass ejection. Our results describe solar wind variability at 0.5 au
but are applicable to near-Earth observatories.
1. GENETIC MALE STERILITY IN
CROP PLANTS AND THEIR
COMMERCIAL EXPLOITATION
ADITHYA P BALAKRISHNAN
04-AGRMA-01724-2018
M. Sc (Agri)
Dept. of Genetics and Plant Breeding
C. P. C. A, S. D. A. U
2. INTRODUCTION
Male Sterility :
Inability of a plant to produce functional male gametes or pollen
grains.
Kaul’s (1998) classification based on phenotypic expression:
1. Structural Male Sterility
2. Sporogenous Male Sterility
3. Functional Male Sterility
4. Types of Male Sterility
On the basis of genetic control mechanisms:
TGMS
1. Genetic Male Sterility (GMS) PGMS
TrGMS
2. Cytoplasmic Male Sterility (CMS)
3. Cytoplasmic - Genetic Male Sterility
4. Chemically Induced Male Sterility
5. Genetic Male Sterility (Nuclear male sterility)
Controlled by nuclear factors and independent of cytoplasmic
influences.
Usually, governed by a single recessive gene (ms).
Exception: Safflower
Several different ‘ms’ genes act monogenically.
Eg: Maize – 70, Tomato – 64, Barley – 57 etc.
Have two types of lines: A line (ms), B line (Maintainer line).
6. Sources of GMS / ‘ms’ Gene
Spontaneous Mutation
(Upland Cotton, Barley, Rice, Sweet pea etc.)
Induced Mutation
Interspecific Crosses
Crops Mutagens
Petunia, Tagetes erecta X ray
Tomato, Watermelon Gamma ray
Pepper, pea, Jowar Colchicine
Groundnut Ethidium Bromide
Barley Acetone
7. Site of action of ‘ms’ alleles:
It is time, site, stage and sex-specific.
‘ms’ may affect the stages like staminal initiation, stamen or anther sac
development, micro sporangial differentiation, PMC formation, pre-
meiotic events, meiotic events, pollen maturation, liberation, etc.
Molecular mechanism of ‘ms’ alleles:
Not clearly understood.
10. TYPES OF GMS:
1. Temperature sensitive GMS
TGMS is heritable and regulated by temperature.
Complete male sterility is achieved by a temperature above critical temperature.
Normal fertility shown below the critical temperature.
Eg:- 23.3⁰ C for rice line Pei-Ai645
UPRI 95-140, UPRI 95-165 of rice (spontaneous mutation)
Stages sensitive to temperature: From formation of PMC’s to meiosis in rice.
Used in China to develop hybrid rice.
11. Eliminates need of B line for multiplication.
No need of fertility restoration.
TGMS is preferable to PGMS.
Line Origin Temperature range for
male fertility
Annong-1s Spontaneous mutation 27⁰C
Hennong S Hybridization < 29⁰C
5460S Irradiation < 29⁰C
SM-38 Spontaneous mutation < 22⁰C
SM-5 Spontaneous mutation < 22⁰C
JP-2 Spontaneous mutation < 26⁰C
JP-38S Spontaneous mutation > 30.5⁰C (Reverse ms)
TGMS lines from rice(indica)
12. 2. Photoperiod sensitive GMS
‘ms’ gene expression affected by photoperiod provided temperature is within
critical range (eg:- 23-29⁰C in rice).
Stages sensitive to PGMS: From differentiation of secondary rachis branches to
formation of PMC’s).
Line Origin Conditions for ms
Nongken 58S Spontaneous mutation Day-length <13.75 hrs
X 88 Hybridization Day-length <13 hrs
MG 201 EMS mutagenesis Day-length 12 hrs
PGMS lines of japonica rice
14. 3. Transgenic GMS
Induction of male sterility by incorporation of foreign genes into plants by r-
DNA technology.
Eg:- 1.) Barnase/Barstar system in Tobacco and Brassica napus (now
available in maize, cauliflower, tomato, wheat, chicory).
Barnase gene: from B. amyloliquifaciens & encodes an Rnase to degrade
tapetum cells, driven by TA29 promoter.
Barstar gene: from B. amyloliquifaciens & encodes a protein to inhibit Barnase
Rnase.
Barnase-bar: Male sterile, Phosphothricine resistant
Barstar/Barnase-bar: Male fertile
16. 2.) GM Mustard by Delhi University scientists
Developed by centre for genetic manipulation of crop plants Delhi University
Bar gene: From Streptomyces hygroscopicicus
30% yield advantage over check ‘Varuna’ (reported in bio-safety research level
field trials between 2014-15)
Varuna X Early Heera-2
DMH-11
(Dhara Mustard Hybrid)
(Barnase line) (Barstar line)
17. 3.) Antisense construct technology of Bcp1 gene in B. campestris
Bcp1 gene: Encodes protein essential for normal pollen development
It is not expressed in presence of antisense construct
driven by pollen specific LAT promoter.
Linked with hormone-inducer enhancer sequence.
Benefits: ms line is self-maintainable
Restorer line isn’t required
Used in hybrid seed production of B.oleraceae
18. Utilization of GMS in Plant Breeding
Pigeon pea Hybrid ICPH 8 (ICPH 82008)
• First commercial hybrid in a pulse crop
• Developed in ICRISAT, Hyderabad particularly for central zone of
India.
ms Prabhat (DT) X ICPL 161
ICPH-8
19. Characteristics of ICPH-8:
High yield potential (41% over
control cultivar UPAS 120)
Vigorous growth
Matures in 115-135 days
Wide adaptation
Drought tolerance
Other public sector hybrids by GMS:
ICPH-4, CoH 1, CoH 2, AKPH 4104, AKPH
2022
20. XYZ System of Hybrid Seed Production in Wheat (Driscoll, 1972)
•The male sterility ‘ms’ gene is recessive and present on wheat chromosome.
• The corresponding male fertility gene ‘MS’ present on homologous chromosome derived
from related species (Rye) and it is linked with marker gene for “Hairy peduncle”.
• The lines X, Y and Z: Homozygous for male sterility factor
Contains 2, 1 and 0 doses of alien chromosomes respectively
• XYZ system’s practical application is still awaited.
21. XYZ system
• Z plant: Male sterile,
bears hybrid seed
• X and Y: For
production of female
parent of hybrid
22. Tomato: GMS has been used for a limited extend for hybrid
production
Chilli: Line ‘Ms12’ has GMS allele ms-509 (induced
mutagenesis) which is being used for hybrid seed production in
India, Korea and Hungary.
Castor: Used for hybrid production in USA
23. Merits and Demerits of GMS
MERITS
Used for hybrid seed production
in seed & vegetative propagated
crops.
Less labour and area
requirement
DEMERITS
Less stable
50 percent plants are fertile
which have to remove every year
thereby increase in cost.
24. References
B. D. Singh, (9th edition). (2013). Plant breeding principles and methods, 86-
93.
Aligane, A. (2015). Male sterility systems in major field crops & their potential
role in crop improvement. Plant biology & biotechnology, (1). 6-25.
Pigeon pea hybrid ICPH 8 (ICPH 82008)- ICRISAT Plant material description
no.4 (1993)